Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013894

Physical Location & Seq

Genomic Coordinates Reverse (-)

56103931 .. 56109871

Gene Structure 5941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20809

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGAGGGAGGAAATGAGGGACCAATTGGTGTACCGTGAGGGGGAAGAGGAGGCGGAGAAGGAGAAGGACCCGCAACGCTGTCGTATTGGGTTTCCTCATAAGAGTGTTGTCGTCGTGGGTTATGCTCTTACGTCTAAGAAGACCAAGAGCTTCTTGCAGCCCAAGCTTGAAGGTTTAGCTAGGAACAAGGGGATATTATTTGTTGCTATTGATCATAACAGGCCTCTTTCGGATCAAGGCCCTTTTGACATTGTGTTGCATAAGCTCTCGGGAAGAGAGTGGCGCCAGATTCTTGAGGACTATAGGAAAACACATCCAGAAGTTACTGTTCTTGATCCTCCTGATGCGATACAACCTTTACATAATCGTCAGTCCATGCTCCAGGCTGTTGCTGATATGGACTTGTCTGATTCCTATGGCAAAGTTGGTGTTCCAAGACAATTGGTTATCAAGAGAGATGCATCATCCATCCCTGATGCTGTTACAGATAGTGGTCTGAAACTACCTCTTGTTGCTAAGCCACTGGTGAATGATGGAAGTGTAAAATCCCATCAACTATCACTTGCCTATGATCGATACTCCCTCCAAAAGCTTGAACCCCCTCTTGTTCTTCAGGAGTTTGTAAACCATGGAGGTGTTCTTTTTAAAGTATATATCGTAGGTGAAGCTATAAAAGTGGTCAGACGTTTCTCTTTACCTGATGTCAGTAAAAGAGAGCTTTCTGAAACCGCGGGTGTGTATCGTTTTCCGAGGGTTTCATGTGCTGCAGCTTCAGCAGATGATGCAGATCTGGACCCTAGCATAGCTGAACTTCCTCCACGGCCATTACTCGAGAGACTTGCTAAGGAACTTCGTCGTCGACTGGGTCTGCGGTTATTCAATTTGGACATGATCCGAGAACATGGAACTAGAGATCGGTTTTATGTCATTGACATTAACTACTTCCCTGGGTATGGGAAAATGCCCGAGTATGAACACATATTTACGGACTTCCTATTGAGCCTGGTAGAGGCAAAGTACAAAAAGAGATCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009987 GO:0010154 GO:0010214 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044464 GO:0047325 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051765 GO:0051766 GO:0052725 GO:0052726 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

345

Amino Acids

39.27

Weight (kDa)

8.81

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins134_P3_kin_N	PF17927	38 - 117	4.7e-38	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
Ins134_P3_kin	PF05770	137 - 333	4.6e-94	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08170 AT4G08170
fragaria_vesca	FvH4_5g33450 FvH4_5g33450
malus_domestica	MD08G1211500.v1.1
prunus_persica	Prupe.1G543400_v2.0.a1 Prupe.1G543400_v2.0.a1
pyrus_communis	pycom08g18220
rosa_chinensis	RchiOBHm_Chr7g0232171
rosa_laevigata	RLG00000001380 RLG00000001383
rosa_roxburghii	Rroxscaffold_3G00228700
rosa_rugosa	Rorug07G0270100
rosa_samantha	Rh7BG398700 Rh7CG445000
rosa_wichuraiana	Rw7G035120 Rw7G035220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	282
AccI	GTMKAC	1 cut(s)	859
AccII	CGCG	1 cut(s)	731
AciI	CCGC	5 cut(s)	53, 71, 729, 731, 871
AclWI	GGATC	3 cut(s)	240, 329, 886
AcoI	YGGCCR	1 cut(s)	821
AcuI	CTGAAG	2 cut(s)	596, 756
AcyI	GRCGYC	1 cut(s)	283
AfaI	GTAC	2 cut(s)	32, 1019
AfiI	CCNNNNNNNGG	3 cut(s)	40, 953, 1009
AgsI	TTSAA	3 cut(s)	170, 596, 880
AjnI	CCWGG	3 cut(s)	381, 946, 1002
AluBI	AGCT	9 cut(s)	150, 166, 179, 265, 592, 668, 718, 770, 806
AluI	AGCT	9 cut(s)	150, 166, 179, 265, 592, 668, 718, 770, 806
Alw26I	GTCTC	1 cut(s)	829
AlwI	GGATC	3 cut(s)	240, 329, 886
Ama87I	CYCGRG	3 cut(s)	268, 830, 965
AoxI	GGCC	3 cut(s)	221, 238, 821
ApeKI	GCWGC	3 cut(s)	157, 764, 767
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	4 cut(s)	19, 67, 239, 793
AsuHPI	GGTGA	2 cut(s)	538, 674
AvaI	CYCGRG	3 cut(s)	268, 830, 965
AvaII	GGWCC	3 cut(s)	19, 67, 793
BanI	GGYRCC	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	146
BbvI	GCAGC	3 cut(s)	169, 751, 779
BccI	CCATC	3 cut(s)	476, 527, 558
BceAI	ACGGC	1 cut(s)	836
BcgI	CGANNNNNNTGC	4 cut(s)	62, 96, 821, 855
BciT130I	CCWGG	3 cut(s)	383, 948, 1004
BclI	TGATCA	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	829
BfaI	CTAG	3 cut(s)	180, 798, 909
BfmI	CTRYAG	2 cut(s)	301, 765
BfoI	RGCGCY	1 cut(s)	286
BglII	AGATCT	2 cut(s)	787, 1028
BisI	GCNGC	3 cut(s)	158, 765, 768
BlpI	GCTNAGC	1 cut(s)	516
BlsI	GCNGC	3 cut(s)	159, 766, 769
Bme1390I	CCNGG	3 cut(s)	383, 948, 1004
Bme18I	GGWCC	3 cut(s)	19, 67, 793
BmeT110I	CYCGRG	3 cut(s)	268, 830, 965
BmgT120I	GGNCC	4 cut(s)	19, 67, 239, 793
BmiI	GGNNCC	4 cut(s)	20, 69, 284, 795
BmrFI	CCNGG	3 cut(s)	383, 948, 1004
BmrI	ACTGGG	1 cut(s)	872
BmsI	GCATC	5 cut(s)	334, 448, 466, 470, 772
BmuI	ACTGGG	1 cut(s)	872
BpiI	GAAGAC	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	365
Bpu10I	CCTNAGC	1 cut(s)	843
Bpu1102I	GCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	314
Bsa29I	ATCGAT	1 cut(s)	574
BsaBI	GATNNNNATC	1 cut(s)	786
BsaHI	GRCGYC	1 cut(s)	283
BsaJI	CCNNGG	6 cut(s)	628, 729, 749, 818, 946, 947
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 953, 1009
Bse1I	ACTGG	2 cut(s)	528, 867
Bse8I	GATNNNNATC	1 cut(s)	786
BseBI	CCWGG	3 cut(s)	383, 948, 1004
BseCI	ATCGAT	1 cut(s)	574
BseDI	CCNNGG	6 cut(s)	628, 729, 749, 818, 946, 947
BseGI	GGATG	3 cut(s)	313, 464, 468
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	3 cut(s)	40, 953, 1009
BseNI	ACTGG	2 cut(s)	528, 867
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	3 cut(s)	169, 751, 779
Bsh1236I	CGCG	1 cut(s)	731
BshFI	GGCC	3 cut(s)	223, 240, 823
BshNI	GGYRCC	1 cut(s)	282
BshVI	ATCGAT	1 cut(s)	574
BsiHKCI	CYCGRG	3 cut(s)	268, 830, 965
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	3 cut(s)	40, 953, 1009
BsmAI	GTCTC	1 cut(s)	829
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	3 cut(s)	223, 240, 823
BsoBI	CYCGRG	3 cut(s)	268, 830, 965
Bsp143I	GATC	8 cut(s)	211, 232, 334, 571, 787, 891, 913, 1028
Bsp1720I	GCTNAGC	1 cut(s)	516
Bsp19I	CCATGG	1 cut(s)	628
BspACI	CCGC	5 cut(s)	53, 71, 729, 731, 871
BspANI	GGCC	3 cut(s)	223, 240, 823
BspDI	ATCGAT	1 cut(s)	574
BspFNI	CGCG	1 cut(s)	731
BspLI	GGNNCC	4 cut(s)	20, 69, 284, 795
BspMAI	CTGCAG	1 cut(s)	769
BspPI	GGATC	3 cut(s)	240, 329, 886
BspT107I	GGYRCC	1 cut(s)	282
BsrI	ACTGG	2 cut(s)	528, 867
BssECI	CCNNGG	6 cut(s)	628, 729, 749, 818, 946, 947
BssMI	GATC	8 cut(s)	211, 232, 334, 571, 787, 891, 913, 1028
BssNI	GRCGYC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	628
Bst2UI	CCWGG	3 cut(s)	383, 948, 1004
Bst4CI	ACNGT	2 cut(s)	35, 328
Bst6I	CTCTTC	2 cut(s)	39, 268
BstACI	GRCGYC	1 cut(s)	283
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstDEI	CTNAG	3 cut(s)	135, 516, 843
BstDSI	CCRYGG	3 cut(s)	628, 729, 818
BstENI	CCTNNNNNAGG	1 cut(s)	1007
BstF5I	GGATG	3 cut(s)	313, 464, 468
BstFNI	CGCG	1 cut(s)	731
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	8 cut(s)	214, 235, 337, 574, 790, 894, 916, 1031
BstMAI	GTCTC	1 cut(s)	829
BstMBI	GATC	8 cut(s)	211, 232, 334, 571, 787, 891, 913, 1028
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 773, 782
BstNI	CCWGG	3 cut(s)	383, 948, 1004
BstSCI	CCNGG	3 cut(s)	381, 946, 1002
BstSFI	CTRYAG	2 cut(s)	301, 765
BstUI	CGCG	1 cut(s)	731
BstV1I	GCAGC	3 cut(s)	169, 751, 779
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	2 cut(s)	787, 1028
BstYI	RGATCY	2 cut(s)	787, 1028
Bsu15I	ATCGAT	1 cut(s)	574
BsuRI	GGCC	3 cut(s)	223, 240, 823
BsuTUI	ATCGAT	1 cut(s)	574
BtgI	CCRYGG	3 cut(s)	628, 729, 818
BtsCI	GGATG	3 cut(s)	313, 464, 468
BtsIMutI	CAGTG	1 cut(s)	521
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	4 cut(s)	19, 67, 239, 793
Cfr42I	CCGCGG	1 cut(s)	732
ClaI	ATCGAT	1 cut(s)	574
Csp6I	GTAC	2 cut(s)	31, 1018
CviAII	CATG	5 cut(s)	376, 629, 759, 889, 902
CviQI	GTAC	2 cut(s)	31, 1018
DdeI	CTNAG	3 cut(s)	135, 516, 843
DinI	GGCGCC	1 cut(s)	284
DpnI	GATC	8 cut(s)	213, 234, 336, 573, 789, 893, 915, 1030
DpnII	GATC	8 cut(s)	211, 232, 334, 571, 787, 891, 913, 1028
DraI	TTTAAA	1 cut(s)	646
EaeI	YGGCCR	1 cut(s)	821
Eam1104I	CTCTTC	2 cut(s)	39, 268
EarI	CTCTTC	2 cut(s)	39, 268
EciI	GGCGGA	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	628
Eco147I	AGGCCT	1 cut(s)	223
Eco47I	GGWCC	3 cut(s)	19, 67, 793
Eco57I	CTGAAG	2 cut(s)	596, 756
Eco88I	CYCGRG	3 cut(s)	268, 830, 965
EcoNI	CCTNNNNNAGG	1 cut(s)	1007
EcoO109I	RGGNCCY	2 cut(s)	67, 239
EcoRII	CCWGG	3 cut(s)	381, 946, 1002
EcoT14I	CCWWGG	1 cut(s)	628
EcoT22I	ATGCAT	1 cut(s)	463
EgeI	GGCGCC	1 cut(s)	284
EheI	GGCGCC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	628
FaeI	CATG	5 cut(s)	379, 632, 762, 892, 905
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	5 cut(s)	375, 628, 758, 888, 901
FauI	CCCGC	2 cut(s)	78, 724
FbaI	TGATCA	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	859
Fnu4HI	GCNGC	3 cut(s)	158, 765, 768
FokI	GGATG	3 cut(s)	300, 451, 455
Fsp4HI	GCNGC	3 cut(s)	158, 765, 768
FspBI	CTAG	3 cut(s)	180, 798, 909
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	3 cut(s)	158, 765, 768
GsuI	CTGGAG	1 cut(s)	365
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	3 cut(s)	223, 240, 823
HhaI	GCGC	1 cut(s)	285
Hin1I	GRCGYC	1 cut(s)	283
Hin1II	CATG	5 cut(s)	379, 632, 762, 892, 905
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	860
HindII	GTYRAC	1 cut(s)	860
HindIII	AAGCTT	2 cut(s)	164, 590
HinfI	GANTC	2 cut(s)	289, 410
HphI	GGTGA	2 cut(s)	538, 674
Hpy166II	GTNNAC	3 cut(s)	31, 625, 860
Hpy188I	TCNGA	7 cut(s)	232, 409, 498, 683, 724, 750, 896
Hpy188III	TCNNGA	9 cut(s)	270, 293, 317, 332, 341, 451, 614, 791, 832
Hpy8I	GTNNAC	3 cut(s)	31, 625, 860
Hpy99I	CGWCG	3 cut(s)	116, 858, 861
HpyAV	CCTTC	3 cut(s)	52, 58, 164
HpyCH4III	ACNGT	2 cut(s)	35, 328
HpyCH4IV	ACGT	2 cut(s)	131, 685
HpyCH4V	TGCA	5 cut(s)	157, 259, 461, 767, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 773, 782
HpyF3I	CTNAG	3 cut(s)	135, 516, 843
HpySE526I	ACGT	2 cut(s)	131, 685
Hsp92I	GRCGYC	1 cut(s)	283
Hsp92II	CATG	5 cut(s)	379, 632, 762, 892, 905
HspAI	GCGC	1 cut(s)	283
KasI	GGCGCC	1 cut(s)	282
Ksp22I	TGATCA	1 cut(s)	211
KspI	CCGCGG	1 cut(s)	732
Kzo9I	GATC	8 cut(s)	211, 232, 334, 571, 787, 891, 913, 1028
LmnI	GCTCC	1 cut(s)	384
Lsp1109I	GCAGC	3 cut(s)	169, 751, 779
LweI	GCATC	5 cut(s)	334, 448, 466, 470, 772
MaeI	CTAG	3 cut(s)	180, 798, 909
MaeII	ACGT	2 cut(s)	131, 685
MaeIII	GTNAC	2 cut(s)	322, 481
MalI	GATC	8 cut(s)	213, 234, 336, 573, 789, 893, 915, 1030
MboI	GATC	8 cut(s)	211, 232, 334, 571, 787, 891, 913, 1028
MboII	GAAGA	4 cut(s)	56, 151, 285, 602
MfeI	CAATTG	2 cut(s)	23, 440
MflI	RGATCY	2 cut(s)	787, 1028
MluCI	AATT	3 cut(s)	23, 440, 880
Mly113I	GGCGCC	1 cut(s)	283
Mph1103I	ATGCAT	1 cut(s)	463
MseI	TTAA	2 cut(s)	645, 936
MslI	CAYNNNNRTG	2 cut(s)	102, 633
MspA1I	CMGCKG	1 cut(s)	731
MspR9I	CCNGG	3 cut(s)	383, 948, 1004
MunI	CAATTG	2 cut(s)	23, 440
MvaI	CCWGG	3 cut(s)	383, 948, 1004
MvnI	CGCG	1 cut(s)	731
MwoI	GCNNNNNNNGC	3 cut(s)	163, 773, 782
NarI	GGCGCC	1 cut(s)	283
NcoI	CCATGG	1 cut(s)	628
NdeII	GATC	8 cut(s)	211, 232, 334, 571, 787, 891, 913, 1028
NlaIII	CATG	5 cut(s)	379, 632, 762, 892, 905
NlaIV	GGNNCC	4 cut(s)	20, 69, 284, 795
NsiI	ATGCAT	1 cut(s)	463
PaeR7I	CTCGAG	1 cut(s)	830
PasI	CCCWGGG	1 cut(s)	947
PceI	AGGCCT	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	289, 410
PflFI	GACNNNGTC	1 cut(s)	864
PkrI	GCNGC	3 cut(s)	159, 766, 769
PluTI	GGCGCC	1 cut(s)	286
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	3 cut(s)	381, 946, 1002
PspGI	CCWGG	3 cut(s)	381, 946, 1002
PspN4I	GGNNCC	4 cut(s)	20, 69, 284, 795
PspPI	GGNCC	4 cut(s)	19, 67, 239, 793
PspPPI	RGGWCCY	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	769
PsuI	RGATCY	2 cut(s)	787, 1028
PsyI	GACNNNGTC	1 cut(s)	864
RsaI	GTAC	2 cut(s)	32, 1019
RsaNI	GTAC	2 cut(s)	31, 1018
RseI	CAYNNNNRTG	2 cut(s)	102, 633
SacII	CCGCGG	1 cut(s)	732
SalI	GTCGAC	1 cut(s)	858
SaqAI	TTAA	2 cut(s)	645, 936
SatI	GCNGC	3 cut(s)	158, 765, 768
Sau3AI	GATC	8 cut(s)	211, 232, 334, 571, 787, 891, 913, 1028
Sau96I	GGNCC	4 cut(s)	19, 67, 239, 793
ScrFI	CCNGG	3 cut(s)	383, 948, 1004
SfaNI	GCATC	5 cut(s)	334, 448, 466, 470, 772
SfcI	CTRYAG	2 cut(s)	301, 765
SfoI	GGCGCC	1 cut(s)	284
Sfr274I	CTCGAG	1 cut(s)	830
Sfr303I	CCGCGG	1 cut(s)	732
SgrBI	CCGCGG	1 cut(s)	732
SinI	GGWCC	3 cut(s)	19, 67, 793
SlaI	CTCGAG	1 cut(s)	830
SmiMI	CAYNNNNRTG	2 cut(s)	102, 633
SmlI	CTYRAG	2 cut(s)	293, 830
SmoI	CTYRAG	2 cut(s)	293, 830
Sse9I	AATT	3 cut(s)	23, 440, 880
SseBI	AGGCCT	1 cut(s)	223
SsiI	CCGC	5 cut(s)	53, 71, 729, 731, 871
SspDI	GGCGCC	1 cut(s)	282
SspMI	CTAG	3 cut(s)	180, 798, 909
StuI	AGGCCT	1 cut(s)	223
StyD4I	CCNGG	3 cut(s)	381, 946, 1002
StyI	CCWWGG	1 cut(s)	628
TaaI	ACNGT	2 cut(s)	35, 328
TaiI	ACGT	2 cut(s)	134, 688
TaqI	TCGA	3 cut(s)	574, 831, 859
TasI	AATT	3 cut(s)	23, 440, 880
TatI	WGTACW	1 cut(s)	1017
TfiI	GAWTC	2 cut(s)	289, 410
Tru1I	TTAA	2 cut(s)	645, 936
Tru9I	TTAA	2 cut(s)	645, 936
TscAI	CASTG	1 cut(s)	528
TseI	GCWGC	3 cut(s)	157, 764, 767
TspDTI	ATGAA	2 cut(s)	747, 987
TspGWI	ACGGA	1 cut(s)	1001
TspRI	CASTG	1 cut(s)	528
Tth111I	GACNNNGTC	1 cut(s)	864
VpaK11BI	GGWCC	3 cut(s)	19, 67, 793
XagI	CCTNNNNNAGG	1 cut(s)	1007
XhoI	CTCGAG	1 cut(s)	830
XmiI	GTMKAC	1 cut(s)	859
XspI	CTAG	3 cut(s)	180, 798, 909
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.