pycom08g20760

phosphoprotein phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0011644
Physical Location & Seq
Reverse (-)
20426080 .. 20427554
1475 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 807 bp
ATGTGGGGAGCTGAGGCCATTTATCAAGGAAACTGCTCTCGGTTCAAAGGCGCACCAGAGCGTCCTCATTGCTGTGAAAAGGAGCCGGTGATCATCGATCTCCTACCCGGAACCCCTTTTAATAAACAGTTCTCCAATTGCTGCAAGGGAGGAGAGCTCTCTTCCATGATCCAAGACTCTTCCAAGTTTCTATCTGCCTTTCGGATGAATGTTGGAGCATTTTCCAACAACAGTACAAACATCAATATGCCCGACAATTTCACCCTTGGACTCCCTGGTTACACCTGCGGCCCGCCAGTCCAAGTCCAACCGACTAAGACTAGCCAAGATGGCCGGCGATGGACTGAAACTCTCGAGACATGGAATGTGACTTGTATGTACTCCCAGTTCAGAGCATCACCTTCTCCAAAGTGCTGTGTTTCCTTGTCTTCATTCTACAATAGCACCATTGCTAAGTGCCCCCGGTGCAGCTGCGGCTGCCAAGGACTTCCGGGAGCAAAATGCGTGAAGCCAGGTGATGAGTTGCAACTTCCTGGTGATCGCGAAACTGAAGAACCATCACCTTTGGTGACTTGTACACGACATATGTGCCCGATAGGAATACATTGGCATGTTAAGGAAAGTTACAAGGAGTACTGGAGGGTTAAGATCACAATCACCAATTATAATTTTGTTAAAAACTATTCTGACTGGACCTTAGTCGTTCAACACCCGAATTTGCAAAGTCTAACGCAGTTGTTCAGCTTCAACTACCACCCTCTCGGTCAGTATGGAAATATAAGTAAGTTAAACAAACCAAAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF ubiquitin

Protein Analysis

269

Amino Acids

30.08

Weight (kDa)

8.64

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 1 - 128 4.8e-40 COBRA-like protein
COB_C PF25079 137 - 257 5.3e-29 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011644)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09790 AT1G09790
fragaria_vesca FvH4_1g08930 FvH4_5g28720
malus_domestica MD08G1239300.v1.1 MD15G1430900.v1.1
prunus_persica Prupe.1G575900_v2.0.a1 Prupe.1G575900_v2.0.a1
pyrus_communis pycom08g20760
rosa_chinensis RchiOBHm_Chr7g0220881
rosa_laevigata RLG00000002195 RLG00000015287
rosa_multiflora Rmu_ssc0000286.1_g000004
rosa_roxburghii Rroxscaffold_3G00238910
rosa_rugosa Rorug07G0198100
rosa_samantha Rh7AG338300 Rh7BG329100 Rh7CG356400 Rh7DG337200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 666
AarI CACCTGC 1 cut(s) 293
Acc36I ACCTGC 1 cut(s) 293
AccII CGCG 1 cut(s) 543
AciI CCGC 3 cut(s) 288, 293, 474
AclWI GGATC 1 cut(s) 163
AcoI YGGCCR 1 cut(s) 331
AcsI RAATTY 1 cut(s) 715
AcuI CTGAAG 1 cut(s) 570
AfaI GTAC 4 cut(s) 235, 380, 577, 635
AgsI TTSAA 3 cut(s) 46, 707, 748
AjnI CCWGG 3 cut(s) 274, 511, 532
AluBI AGCT 4 cut(s) 11, 157, 471, 744
AluI AGCT 4 cut(s) 11, 157, 471, 744
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 1 cut(s) 163
Ama87I CYCGRG 1 cut(s) 353
AoxI GGCC 3 cut(s) 15, 289, 331
ApeKI GCWGC 4 cut(s) 141, 468, 471, 477
ApoI RAATTY 1 cut(s) 715
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 2 cut(s) 290, 693
AsuC2I CCSGG 3 cut(s) 108, 463, 492
AsuHPI GGTGA 8 cut(s) 100, 253, 390, 527, 548, 552, 580, 649
AvaI CYCGRG 1 cut(s) 353
AvaII GGWCC 1 cut(s) 693
BaeGI GKGCMC 2 cut(s) 461, 593
BanII GRGCYC 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 420
Bbv12I GWGCWC 1 cut(s) 159
BbvCI CCTCAGC 1 cut(s) 12
BbvI GCAGC 4 cut(s) 128, 458, 464, 480
BccI CCATC 3 cut(s) 323, 333, 565
BcgI CGANNNNNNTGC 2 cut(s) 570, 604
BciT130I CCWGG 3 cut(s) 276, 513, 534
BclI TGATCA 1 cut(s) 90
BcnI CCSGG 3 cut(s) 108, 463, 492
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 293
BglI GCCNNNNNGGC 1 cut(s) 330
BisI GCNGC 6 cut(s) 142, 289, 469, 472, 475, 478
BlsI GCNGC 6 cut(s) 143, 290, 470, 473, 476, 479
BmcAI AGTACT 1 cut(s) 635
Bme1390I CCNGG 6 cut(s) 108, 276, 463, 492, 513, 534
Bme18I GGWCC 1 cut(s) 693
BmeT110I CYCGRG 1 cut(s) 353
BmgT120I GGNCC 2 cut(s) 290, 693
BmiI GGNNCC 2 cut(s) 84, 112
BmrFI CCNGG 6 cut(s) 108, 276, 463, 492, 513, 534
BmrI ACTGGG 1 cut(s) 379
BmsI GCATC 1 cut(s) 404
BmuI ACTGGG 1 cut(s) 379
BoxI GACNNNNGTC 1 cut(s) 698
BpiI GAAGAC 1 cut(s) 420
BplI GAGNNNNNCTC 2 cut(s) 141, 173
BpmI CTGGAG 1 cut(s) 658
Bpu10I CCTNAGC 1 cut(s) 12
BpuMI CCSGG 3 cut(s) 108, 463, 492
Bsa29I ATCGAT 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 653
BsaJI CCNNGG 4 cut(s) 265, 274, 461, 481
Bse118I RCCGGY 2 cut(s) 85, 333
Bse1I ACTGG 4 cut(s) 296, 385, 641, 695
Bse3DI GCAATG 2 cut(s) 67, 447
Bse8I GATNNNNATC 1 cut(s) 653
BseBI CCWGG 3 cut(s) 276, 513, 534
BseCI ATCGAT 1 cut(s) 96
BseDI CCNNGG 4 cut(s) 265, 274, 461, 481
BseGI GGATG 1 cut(s) 210
BseJI GATNNNNATC 1 cut(s) 653
BseMI GCAATG 2 cut(s) 67, 447
BseNI ACTGG 4 cut(s) 296, 385, 641, 695
BseRI GAGGAG 1 cut(s) 165
BseSI GKGCMC 2 cut(s) 461, 593
BseXI GCAGC 4 cut(s) 128, 458, 464, 480
BsgI GTGCAG 1 cut(s) 487
Bsh1236I CGCG 1 cut(s) 543
BshFI GGCC 3 cut(s) 17, 291, 333
BshVI ATCGAT 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 353
BsiSI CCGG 5 cut(s) 86, 108, 334, 463, 491
BsmAI GTCTC 1 cut(s) 350
BsnI GGCC 3 cut(s) 17, 291, 333
BsoBI CYCGRG 1 cut(s) 353
Bsp1286I GDGCHC 3 cut(s) 159, 461, 593
Bsp1407I TGTACA 1 cut(s) 575
Bsp143I GATC 5 cut(s) 90, 97, 168, 538, 648
Bsp68I TCGCGA 1 cut(s) 543
BspACI CCGC 3 cut(s) 288, 293, 474
BspANI GGCC 3 cut(s) 17, 291, 333
BspCNI CTCAG 1 cut(s) 4
BspDI ATCGAT 1 cut(s) 96
BspFNI CGCG 1 cut(s) 543
BspLI GGNNCC 2 cut(s) 84, 112
BspMI ACCTGC 1 cut(s) 293
BspPI GGATC 1 cut(s) 163
BsrDI GCAATG 2 cut(s) 67, 447
BsrFI RCCGGY 2 cut(s) 85, 333
BsrGI TGTACA 1 cut(s) 575
BsrI ACTGG 4 cut(s) 296, 385, 641, 695
BssAI RCCGGY 2 cut(s) 85, 333
BssECI CCNNGG 4 cut(s) 265, 274, 461, 481
BssMI GATC 5 cut(s) 90, 97, 168, 538, 648
BssT1I CCWWGG 2 cut(s) 265, 481
Bst2UI CCWGG 3 cut(s) 276, 513, 534
Bst4CI ACNGT 2 cut(s) 129, 233
Bst6I CTCTTC 2 cut(s) 166, 184
BstAUI TGTACA 1 cut(s) 575
BstC8I GCNNGC 2 cut(s) 293, 335
BstDEI CTNAG 4 cut(s) 12, 315, 453, 697
BstF5I GGATG 1 cut(s) 210
BstFNI CGCG 1 cut(s) 543
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 5 cut(s) 93, 100, 171, 541, 651
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 5 cut(s) 90, 97, 168, 538, 648
BstMWI GCNNNNNNNGC 4 cut(s) 330, 465, 474, 477
BstNI CCWGG 3 cut(s) 276, 513, 534
BstNSI RCATGY 1 cut(s) 614
BstPAI GACNNNNGTC 1 cut(s) 698
BstSCI CCNGG 6 cut(s) 106, 274, 461, 490, 511, 532
BstSLI GKGCMC 2 cut(s) 461, 593
BstUI CGCG 1 cut(s) 543
BstV1I GCAGC 4 cut(s) 128, 458, 464, 480
BstV2I GAAGAC 1 cut(s) 420
Bsu15I ATCGAT 1 cut(s) 96
BsuRI GGCC 3 cut(s) 17, 291, 333
BsuTUI ATCGAT 1 cut(s) 96
BtgZI GCGATG 1 cut(s) 352
BtsCI GGATG 1 cut(s) 210
BtuMI TCGCGA 1 cut(s) 543
BveI ACCTGC 1 cut(s) 293
Cac8I GCNNGC 2 cut(s) 293, 335
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 2 cut(s) 85, 333
Cfr13I GGNCC 2 cut(s) 290, 693
ClaI ATCGAT 1 cut(s) 96
CseI GACGC 1 cut(s) 50
Csp6I GTAC 4 cut(s) 234, 379, 576, 634
CviAII CATG 3 cut(s) 166, 360, 611
CviQI GTAC 4 cut(s) 234, 379, 576, 634
DdeI CTNAG 4 cut(s) 12, 315, 453, 697
DpnI GATC 5 cut(s) 92, 99, 170, 540, 650
DpnII GATC 5 cut(s) 90, 97, 168, 538, 648
EaeI YGGCCR 1 cut(s) 331
Eam1104I CTCTTC 2 cut(s) 166, 184
EarI CTCTTC 2 cut(s) 166, 184
Ecl136II GAGCTC 1 cut(s) 157
Eco130I CCWWGG 2 cut(s) 265, 481
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 693
Eco53kI GAGCTC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 353
EcoICRI GAGCTC 1 cut(s) 157
EcoRII CCWGG 3 cut(s) 274, 511, 532
EcoT14I CCWWGG 2 cut(s) 265, 481
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 2 cut(s) 265, 481
FaeI CATG 3 cut(s) 169, 363, 614
FatI CATG 3 cut(s) 165, 359, 610
FauI CCCGC 1 cut(s) 300
FauNDI CATATG 1 cut(s) 585
FbaI TGATCA 1 cut(s) 90
Fnu4HI GCNGC 6 cut(s) 142, 289, 469, 472, 475, 478
FokI GGATG 1 cut(s) 217
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 6 cut(s) 142, 289, 469, 472, 475, 478
FspBI CTAG 1 cut(s) 321
GlaI GCGC 1 cut(s) 52
GluI GCNGC 6 cut(s) 142, 289, 469, 472, 475, 478
GsuI CTGGAG 1 cut(s) 658
HaeIII GGCC 3 cut(s) 17, 291, 333
HapII CCGG 5 cut(s) 86, 108, 334, 463, 491
HgaI GACGC 1 cut(s) 50
HhaI GCGC 1 cut(s) 53
Hin1II CATG 3 cut(s) 169, 363, 614
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 2 cut(s) 176, 270
HpaII CCGG 5 cut(s) 86, 108, 334, 463, 491
HphI GGTGA 8 cut(s) 100, 253, 390, 527, 548, 552, 580, 649
Hpy166II GTNNAC 1 cut(s) 578
Hpy188I TCNGA 3 cut(s) 204, 392, 688
Hpy188III TCNNGA 3 cut(s) 353, 355, 542
Hpy8I GTNNAC 1 cut(s) 578
HpyAV CCTTC 1 cut(s) 411
HpyCH4III ACNGT 2 cut(s) 129, 233
HpyCH4V TGCA 4 cut(s) 144, 468, 526, 721
HpyF10VI GCNNNNNNNGC 4 cut(s) 330, 465, 474, 477
HpyF3I CTNAG 4 cut(s) 12, 315, 453, 697
Hsp92II CATG 3 cut(s) 169, 363, 614
HspAI GCGC 1 cut(s) 51
KroI GCCGGC 1 cut(s) 333
KroNI GCCGGC 1 cut(s) 335
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 5 cut(s) 90, 97, 168, 538, 648
LmnI GCTCC 4 cut(s) 8, 82, 215, 494
Lsp1109I GCAGC 4 cut(s) 128, 458, 464, 480
LweI GCATC 1 cut(s) 404
MaeI CTAG 1 cut(s) 321
MaeIII GTNAC 4 cut(s) 278, 367, 568, 623
MalI GATC 5 cut(s) 92, 99, 170, 540, 650
MboI GATC 5 cut(s) 90, 97, 168, 538, 648
MboII GAAGA 4 cut(s) 153, 171, 420, 563
MfeI CAATTG 1 cut(s) 136
MhlI GDGCHC 3 cut(s) 159, 461, 593
MluCI AATT 5 cut(s) 136, 256, 661, 667, 715
MlyI GAGTC 2 cut(s) 170, 264
MmeI TCCRAC 3 cut(s) 193, 249, 331
MnlI CCTC 5 cut(s) 7, 75, 143, 633, 768
MroNI GCCGGC 1 cut(s) 333
MseI TTAA 5 cut(s) 120, 615, 645, 675, 788
MslI CAYNNNNRTG 3 cut(s) 72, 245, 609
MspA1I CMGCKG 1 cut(s) 471
MspI CCGG 5 cut(s) 86, 108, 334, 463, 491
MspR9I CCNGG 6 cut(s) 108, 276, 463, 492, 513, 534
MunI CAATTG 1 cut(s) 136
MvaI CCWGG 3 cut(s) 276, 513, 534
MvnI CGCG 1 cut(s) 543
MwoI GCNNNNNNNGC 4 cut(s) 330, 465, 474, 477
NaeI GCCGGC 1 cut(s) 335
NciI CCSGG 3 cut(s) 108, 463, 492
NdeI CATATG 1 cut(s) 585
NdeII GATC 5 cut(s) 90, 97, 168, 538, 648
NgoMIV GCCGGC 1 cut(s) 333
NlaIII CATG 3 cut(s) 169, 363, 614
NlaIV GGNNCC 2 cut(s) 84, 112
NmuCI GTSAC 2 cut(s) 367, 568
NruI TCGCGA 1 cut(s) 543
NspI RCATGY 1 cut(s) 614
PaeR7I CTCGAG 1 cut(s) 353
PaqCI CACCTGC 1 cut(s) 293
PdiI GCCGGC 1 cut(s) 335
PfoI TCCNGGA 1 cut(s) 490
PkrI GCNGC 6 cut(s) 143, 290, 470, 473, 476, 479
PleI GAGTC 2 cut(s) 170, 264
PpsI GAGTC 2 cut(s) 170, 264
PshAI GACNNNNGTC 1 cut(s) 698
PsiI TTATAA 1 cut(s) 666
Psp124BI GAGCTC 1 cut(s) 159
Psp6I CCWGG 3 cut(s) 274, 511, 532
PspGI CCWGG 3 cut(s) 274, 511, 532
PspN4I GGNNCC 2 cut(s) 84, 112
PspPI GGNCC 2 cut(s) 290, 693
PsrI GAACNNNNNNTAC 2 cut(s) 371, 403
PvuII CAGCTG 1 cut(s) 471
RruI TCGCGA 1 cut(s) 543
RsaI GTAC 4 cut(s) 235, 380, 577, 635
RsaNI GTAC 4 cut(s) 234, 379, 576, 634
RseI CAYNNNNRTG 3 cut(s) 72, 245, 609
SacI GAGCTC 1 cut(s) 159
SaqAI TTAA 5 cut(s) 120, 615, 645, 675, 788
SatI GCNGC 6 cut(s) 142, 289, 469, 472, 475, 478
Sau3AI GATC 5 cut(s) 90, 97, 168, 538, 648
Sau96I GGNCC 2 cut(s) 290, 693
ScaI AGTACT 1 cut(s) 635
SchI GAGTC 2 cut(s) 170, 264
ScrFI CCNGG 6 cut(s) 108, 276, 463, 492, 513, 534
SduI GDGCHC 3 cut(s) 159, 461, 593
SetI ASST 9 cut(s) 13, 159, 287, 403, 473, 517, 565, 698, 746
SfaNI GCATC 1 cut(s) 404
Sfr274I CTCGAG 1 cut(s) 353
SinI GGWCC 1 cut(s) 693
SlaI CTCGAG 1 cut(s) 353
SmiMI CAYNNNNRTG 3 cut(s) 72, 245, 609
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 5 cut(s) 136, 256, 661, 667, 715
SsiI CCGC 3 cut(s) 288, 293, 474
SspMI CTAG 1 cut(s) 321
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 6 cut(s) 106, 274, 461, 490, 511, 532
StyI CCWWGG 2 cut(s) 265, 481
TaaI ACNGT 2 cut(s) 129, 233
TaqI TCGA 2 cut(s) 96, 354
TaqII GACCGA 1 cut(s) 752
TasI AATT 5 cut(s) 136, 256, 661, 667, 715
TatI WGTACW 4 cut(s) 233, 378, 575, 633
TauI GCSGC 2 cut(s) 291, 477
Tru1I TTAA 5 cut(s) 120, 615, 645, 675, 788
Tru9I TTAA 5 cut(s) 120, 615, 645, 675, 788
TseFI GTSAC 2 cut(s) 367, 568
TseI GCWGC 4 cut(s) 141, 468, 471, 477
Tsp45I GTSAC 2 cut(s) 367, 568
TspDTI ATGAA 2 cut(s) 221, 420
VpaK11BI GGWCC 1 cut(s) 693
XapI RAATTY 1 cut(s) 715
XceI RCATGY 1 cut(s) 614
XhoI CTCGAG 1 cut(s) 353
XspI CTAG 1 cut(s) 321
ZrmI AGTACT 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.