Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0010491

Physical Location & Seq

Genomic Coordinates Reverse (-)

20912645 .. 20915040

Gene Structure 2396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAACGTGGCGAGCAAGGGAGGCGGAGGAGGCATGGCGGCGTCGCGGATCGTAGTCATAACGGGAGTGAGCAAAGGGCTGGGGCGAGCGCTGGCGGTGGAGATGGCGAAGAGGGGCCACACAGTAATCGGCTGCTCCCGTTCCCAAGATAAGCTCAACGCCCTCCAATCCGAGCTCTCCTCCGACAAACACCTCTTCCTCAACGCCGACGTCAGGTCTAATAACAGCATTGCTGATCTGGCGCGAGTTGTTATGGAAAAGAGGGGAATCCCAGATATTGTAGTGAACAATGCAGGCATGATCAACGACAACAAGAAGCTTTGGGAGGTTCCGGTGGAAGAATTCGACAGCGTGATAGATACCAACGTTAAAGGAGTCGCTAACGTGTTGCGCCACTTCATTCCACTGATGCTGTCGCGGAATGAGGGGAAGAACCCATCCGGAATCATAGTAAACATCTCCTCCGGATGGGGTCGATCGGGTGCAGCGCACGTGGCACCTTACTGTGCGTCAAAATGGGCGGTGGAGGGGTTGACCCGATCAGTGGCGAGGGAGGTACCGAGTGAGATGGCGGTTCTTGCGCTCAGCCCGGGTGTGATACACACGGACATGCTTGAGTCGTGTTTTGGGGAGTCTAGTATGAAGAATTATCCGAAACCTGATGCATGGGCAGTCAGGGCTGCTACCATGATTTTGAATCTTACGGCGGCTGACAACGGCGCTTCTCTTAACGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0034641 GO:0036094 GO:0042558 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048037 GO:0050661 GO:0050662 GO:0051186 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

246

Amino Acids

25.96

Weight (kDa)

8.79

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	17 - 207	2.1e-47	short chain dehydrogenase
KR	PF08659	18 - 184	8e-08	KR domain
Epimerase	PF01370	18 - 186	8.1e-06	NAD dependent epimerase/dehydratase family
adh_short_C2	PF13561	22 - 221	7.1e-35	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10310
fragaria_vesca	FvH4_5g27970
malus_domestica	MD08G1247500.v1.1
prunus_persica	Prupe.1G584900_v2.0.a1
pyrus_communis	pycom08g21440
rosa_chinensis	RchiOBHm_Chr7g0220131 RchiOBHm_Chr7g0220301
rosa_laevigata	RLG00000002254
rosa_multiflora	Rmu_sc0001136.1_g000033 Rmu_sc0001565.1_g000004 Rmu_sc0006361.1_g000021 Rmu_sc0023628.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239760
rosa_rugosa	Rorug07G0189800 Rorug07G0192100
rosa_samantha	Rh5DG142100 Rh7AG332700 Rh7BG323000 Rh7CG350200 Rh7DG328800
rosa_wichuraiana	Rw7G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	213
Acc65I	GGTACC	1 cut(s)	556
AccB1I	GGYRCC	2 cut(s)	496, 556
AccII	CGCG	3 cut(s)	46, 244, 418
AccIII	TCCGGA	2 cut(s)	440, 464
AciI	CCGC	8 cut(s)	24, 38, 46, 95, 418, 521, 572, 707
AclI	AACGTT	1 cut(s)	366
AclWI	GGATC	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	341
AcvI	CACGTG	1 cut(s)	493
AcyI	GRCGYC	2 cut(s)	41, 210
AfaI	GTAC	1 cut(s)	558
AfeI	AGCGCT	1 cut(s)	90
AfiI	CCNNNNNNNGG	3 cut(s)	213, 468, 544
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	1 cut(s)	697
AhdI	GACNNNNNGTC	1 cut(s)	214
AluBI	AGCT	3 cut(s)	154, 175, 319
AluI	AGCT	3 cut(s)	154, 175, 319
Alw21I	GWGCWC	1 cut(s)	177
AlwI	GGATC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	589
Aor13HI	TCCGGA	2 cut(s)	440, 464
Aor51HI	AGCGCT	1 cut(s)	90
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	3 cut(s)	132, 485, 680
ApoI	RAATTY	1 cut(s)	341
Asp718I	GGTACC	1 cut(s)	556
AspLEI	GCGC	6 cut(s)	91, 244, 393, 490, 583, 722
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	2 cut(s)	590, 591
AvaI	CYCGRG	1 cut(s)	589
BaeI	ACNNNNGTAYC	2 cut(s)	351, 384
BanI	GGYRCC	2 cut(s)	496, 556
BanII	GRGCYC	1 cut(s)	177
BbrPI	CACGTG	1 cut(s)	493
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	3 cut(s)	119, 497, 667
BccI	CCATC	4 cut(s)	97, 445, 462, 562
BceAI	ACGGC	2 cut(s)	720, 733
BclI	TGATCA	1 cut(s)	300
BcnI	CCSGG	2 cut(s)	590, 591
BfaI	CTAG	1 cut(s)	636
BfoI	RGCGCY	2 cut(s)	92, 723
BisI	GCNGC	5 cut(s)	39, 133, 486, 681, 708
BlpI	GCTNAGC	1 cut(s)	584
BlsI	GCNGC	5 cut(s)	40, 134, 487, 682, 709
Bme1390I	CCNGG	2 cut(s)	590, 591
BmeRI	GACNNNNNGTC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	589
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	4 cut(s)	116, 330, 498, 558
BmrFI	CCNGG	2 cut(s)	590, 591
BmsI	GCATC	2 cut(s)	399, 652
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
Bpu1102I	GCTNAGC	1 cut(s)	584
BpuEI	CTTGAG	1 cut(s)	635
BpuMI	CCSGG	2 cut(s)	590, 591
BsaAI	YACGTR	1 cut(s)	493
BsaHI	GRCGYC	2 cut(s)	41, 210
BsaJI	CCNNGG	1 cut(s)	589
BsaWI	WCCGGW	3 cut(s)	331, 440, 464
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 468, 544
Bse3DI	GCAATG	1 cut(s)	228
BseAI	TCCGGA	2 cut(s)	440, 464
BseDI	CCNNGG	1 cut(s)	589
BseGI	GGATG	2 cut(s)	437, 473
BseLI	CCNNNNNNNGG	3 cut(s)	213, 468, 544
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	598
BseRI	GAGGAG	3 cut(s)	42, 169, 451
BseXI	GCAGC	3 cut(s)	119, 497, 667
BseYI	CCCAGC	1 cut(s)	79
BsgI	GTGCAG	1 cut(s)	504
Bsh1236I	CGCG	3 cut(s)	46, 244, 418
Bsh1285I	CGRYCG	1 cut(s)	479
BshFI	GGCC	1 cut(s)	117
BshNI	GGYRCC	2 cut(s)	496, 556
BsiEI	CGRYCG	1 cut(s)	479
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	589
BsiSI	CCGG	4 cut(s)	332, 441, 465, 590
BslI	CCNNNNNNNGG	3 cut(s)	213, 468, 544
BsnI	GGCC	1 cut(s)	117
BsoBI	CYCGRG	1 cut(s)	589
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp13I	TCCGGA	2 cut(s)	440, 464
Bsp143I	GATC	5 cut(s)	48, 235, 300, 476, 539
Bsp1720I	GCTNAGC	1 cut(s)	584
BspACI	CCGC	8 cut(s)	24, 38, 46, 95, 418, 521, 572, 707
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	597
BspEI	TCCGGA	2 cut(s)	440, 464
BspFNI	CGCG	3 cut(s)	46, 244, 418
BspLI	GGNNCC	4 cut(s)	116, 330, 498, 558
BspPI	GGATC	1 cut(s)	56
BspT107I	GGYRCC	2 cut(s)	496, 556
BsrDI	GCAATG	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	589
BssMI	GATC	5 cut(s)	48, 235, 300, 476, 539
BssNI	GRCGYC	2 cut(s)	41, 210
Bst4CI	ACNGT	2 cut(s)	124, 506
Bst6I	CTCTTC	2 cut(s)	104, 200
BstACI	GRCGYC	2 cut(s)	41, 210
BstBAI	YACGTR	1 cut(s)	493
BstC8I	GCNNGC	4 cut(s)	13, 87, 93, 295
BstDEI	CTNAG	1 cut(s)	584
BstF5I	GGATG	2 cut(s)	437, 473
BstFNI	CGCG	3 cut(s)	46, 244, 418
BstH2I	RGCGCY	2 cut(s)	92, 723
BstHHI	GCGC	6 cut(s)	91, 244, 393, 490, 583, 722
BstKTI	GATC	5 cut(s)	51, 238, 303, 479, 542
BstMBI	GATC	5 cut(s)	48, 235, 300, 476, 539
BstMCI	CGRYCG	1 cut(s)	479
BstMWI	GCNNNNNNNGC	6 cut(s)	21, 30, 239, 494, 578, 677
BstNSI	RCATGY	1 cut(s)	613
BstSCI	CCNGG	2 cut(s)	588, 589
BstUI	CGCG	3 cut(s)	46, 244, 418
BstV1I	GCAGC	3 cut(s)	119, 497, 667
BsuRI	GGCC	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	437, 473
BtsIMutI	CAGTG	2 cut(s)	404, 549
Cac8I	GCNNGC	4 cut(s)	13, 87, 93, 295
CfoI	GCGC	6 cut(s)	91, 244, 393, 490, 583, 722
Cfr13I	GGNCC	1 cut(s)	115
Cfr9I	CCCGGG	1 cut(s)	589
CseI	GACGC	2 cut(s)	30, 498
Csp6I	GTAC	1 cut(s)	557
CviAII	CATG	5 cut(s)	34, 298, 610, 666, 688
CviJI	RGCY	9 cut(s)	79, 117, 132, 154, 175, 319, 588, 680, 710
CviKI_1	RGCY	9 cut(s)	79, 117, 132, 154, 175, 319, 588, 680, 710
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	1 cut(s)	584
DpnI	GATC	5 cut(s)	50, 237, 302, 478, 541
DpnII	GATC	5 cut(s)	48, 235, 300, 476, 539
DriI	GACNNNNNGTC	1 cut(s)	214
Eam1104I	CTCTTC	2 cut(s)	104, 200
Eam1105I	GACNNNNNGTC	1 cut(s)	214
EarI	CTCTTC	2 cut(s)	104, 200
EciI	GGCGGA	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	177
Eco47III	AGCGCT	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	175
Eco72I	CACGTG	1 cut(s)	493
Eco88I	CYCGRG	1 cut(s)	589
EcoICRI	GAGCTC	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	341
EcoT22I	ATGCAT	1 cut(s)	667
EcoT38I	GRGCYC	1 cut(s)	177
FaeI	CATG	5 cut(s)	37, 301, 613, 669, 691
FatI	CATG	5 cut(s)	33, 297, 609, 665, 687
FbaI	TGATCA	1 cut(s)	300
Fnu4HI	GCNGC	5 cut(s)	39, 133, 486, 681, 708
FokI	GGATG	2 cut(s)	424, 480
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	5 cut(s)	39, 133, 486, 681, 708
FspBI	CTAG	1 cut(s)	636
GlaI	GCGC	6 cut(s)	90, 243, 392, 489, 582, 721
GluI	GCNGC	5 cut(s)	39, 133, 486, 681, 708
GsaI	CCCAGC	1 cut(s)	83
HaeII	RGCGCY	2 cut(s)	92, 723
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	4 cut(s)	332, 441, 465, 590
HgaI	GACGC	2 cut(s)	30, 498
HhaI	GCGC	6 cut(s)	91, 244, 393, 490, 583, 722
Hin1I	GRCGYC	2 cut(s)	41, 210
Hin1II	CATG	5 cut(s)	37, 301, 613, 669, 691
Hin6I	GCGC	6 cut(s)	89, 242, 391, 488, 581, 720
HinP1I	GCGC	6 cut(s)	89, 242, 391, 488, 581, 720
HincII	GTYRAC	1 cut(s)	534
HindII	GTYRAC	1 cut(s)	534
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	6 cut(s)	267, 375, 444, 617, 632, 697
HpaII	CCGG	4 cut(s)	332, 441, 465, 590
Hpy166II	GTNNAC	3 cut(s)	286, 454, 534
Hpy188I	TCNGA	3 cut(s)	172, 184, 654
Hpy188III	TCNNGA	2 cut(s)	441, 465
Hpy8I	GTNNAC	3 cut(s)	286, 454, 534
Hpy99I	CGWCG	2 cut(s)	46, 212
HpyCH4III	ACNGT	2 cut(s)	124, 506
HpyCH4IV	ACGT	6 cut(s)	6, 210, 366, 384, 492, 732
HpyCH4V	TGCA	3 cut(s)	293, 485, 665
HpyF10VI	GCNNNNNNNGC	6 cut(s)	21, 30, 239, 494, 578, 677
HpyF3I	CTNAG	1 cut(s)	584
HpySE526I	ACGT	6 cut(s)	6, 210, 366, 384, 492, 732
Hsp92I	GRCGYC	2 cut(s)	41, 210
Hsp92II	CATG	5 cut(s)	37, 301, 613, 669, 691
HspAI	GCGC	6 cut(s)	89, 242, 391, 488, 581, 720
Kpn2I	TCCGGA	2 cut(s)	440, 464
KpnI	GGTACC	1 cut(s)	560
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	5 cut(s)	48, 235, 300, 476, 539
LmnI	GCTCC	1 cut(s)	140
Lsp1109I	GCAGC	3 cut(s)	119, 497, 667
LweI	GCATC	2 cut(s)	399, 652
MaeI	CTAG	1 cut(s)	636
MaeII	ACGT	6 cut(s)	6, 210, 366, 384, 492, 732
MalI	GATC	5 cut(s)	50, 237, 302, 478, 541
MboI	GATC	5 cut(s)	48, 235, 300, 476, 539
MboII	GAAGA	5 cut(s)	121, 187, 350, 442, 655
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	2 cut(s)	341, 646
MlyI	GAGTC	3 cut(s)	384, 626, 641
MmeI	TCCRAC	1 cut(s)	207
Mph1103I	ATGCAT	1 cut(s)	667
MroI	TCCGGA	2 cut(s)	440, 464
MseI	TTAA	2 cut(s)	369, 729
MslI	CAYNNNNRTG	1 cut(s)	608
MspI	CCGG	4 cut(s)	332, 441, 465, 590
MspR9I	CCNGG	2 cut(s)	590, 591
MvnI	CGCG	3 cut(s)	46, 244, 418
MwoI	GCNNNNNNNGC	6 cut(s)	21, 30, 239, 494, 578, 677
NciI	CCSGG	2 cut(s)	590, 591
NdeII	GATC	5 cut(s)	48, 235, 300, 476, 539
NlaIII	CATG	5 cut(s)	37, 301, 613, 669, 691
NlaIV	GGNNCC	4 cut(s)	116, 330, 498, 558
NsiI	ATGCAT	1 cut(s)	667
NspI	RCATGY	1 cut(s)	613
PfeI	GAWTC	3 cut(s)	267, 444, 697
PkrI	GCNGC	5 cut(s)	40, 134, 487, 682, 709
Ple19I	CGATCG	1 cut(s)	479
PleI	GAGTC	3 cut(s)	383, 625, 640
PmaCI	CACGTG	1 cut(s)	493
PmlI	CACGTG	1 cut(s)	493
PpsI	GAGTC	3 cut(s)	383, 625, 640
Ppu21I	YACGTR	1 cut(s)	493
Psp124BI	GAGCTC	1 cut(s)	177
Psp1406I	AACGTT	1 cut(s)	366
PspCI	CACGTG	1 cut(s)	493
PspFI	CCCAGC	1 cut(s)	79
PspN4I	GGNNCC	4 cut(s)	116, 330, 498, 558
PspPI	GGNCC	1 cut(s)	115
PvuI	CGATCG	1 cut(s)	479
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
RseI	CAYNNNNRTG	1 cut(s)	608
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	369, 729
SatI	GCNGC	5 cut(s)	39, 133, 486, 681, 708
Sau3AI	GATC	5 cut(s)	48, 235, 300, 476, 539
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	3 cut(s)	384, 626, 641
ScrFI	CCNGG	2 cut(s)	590, 591
SduI	GDGCHC	1 cut(s)	177
SfaNI	GCATC	2 cut(s)	399, 652
SmaI	CCCGGG	1 cut(s)	591
SmiMI	CAYNNNNRTG	1 cut(s)	608
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
Sse9I	AATT	2 cut(s)	341, 646
SsiI	CCGC	8 cut(s)	24, 38, 46, 95, 418, 521, 572, 707
SspMI	CTAG	1 cut(s)	636
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	588, 589
TaaI	ACNGT	2 cut(s)	124, 506
TaiI	ACGT	6 cut(s)	9, 213, 369, 387, 495, 735
TaqI	TCGA	2 cut(s)	345, 475
TasI	AATT	2 cut(s)	341, 646
TauI	GCSGC	2 cut(s)	41, 710
TfiI	GAWTC	3 cut(s)	267, 444, 697
Tru1I	TTAA	2 cut(s)	369, 729
Tru9I	TTAA	2 cut(s)	369, 729
TscAI	CASTG	2 cut(s)	411, 549
TseI	GCWGC	3 cut(s)	132, 485, 680
TspDTI	ATGAA	3 cut(s)	17, 388, 656
TspGWI	ACGGA	1 cut(s)	620
TspMI	CCCGGG	1 cut(s)	589
TspRI	CASTG	2 cut(s)	411, 549
XapI	RAATTY	1 cut(s)	341
XceI	RCATGY	1 cut(s)	613
XmaI	CCCGGG	1 cut(s)	589
XspI	CTAG	1 cut(s)	636
ZraI	GACGTC	1 cut(s)	211
Zsp2I	ATGCAT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.