Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006841

Physical Location & Seq

Genomic Coordinates Reverse (-)

5722077 .. 5727334

Gene Structure 5258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCGGCGGTGGAAGTTCACAAGTTCGCTCAGTGCATCACTTGCCACGCTTGGAGCCGTGATCGCTCCATGATCGCATTTTGTCCGAACAACAATGAAGTTCACATCTATGCTCTGTTGCAAGGAAAGTGGGAGAAGTTGCATGTTCTTCAGAAGCATGACCAAATTGTATCTGGGATAGACTGGAGCGCGAGGGCAAACAAAATAGTTACTGCATCTCATGATCGGAATTCTTATGTCTGGAATCTAGAAGGATCAGAGTGGGTACCAACCCTTGTTATCCTTCGGCTAAATCGCGCTGCACTTTGTGTTAAGTGGAATCCAAGAGAAAACAAGTTTGCTGTTGGAAGTGGGGCAAAAACTGTTTGTATATGCTACTACGAGCAAGAGAATAACTGGTGGGTCAGTAAACTTATCAGAAAAAGGCACGACTCTTCTGTGACAAGTGTTGCTTGGCATCCCAATAATATTCTTCTAGCAACAGCATCTACAGATGGAAAATGCCGTATATTTTCCACTTTTATTAAGGTCGTCGATGCAAAGGAATCAAGAACAGGCCCATTTGCTGATTCAAAATTTGGAGAGCAAATTCTTCAGCTTGATCTATCATTTTCTTGGTCATTTGGCGTGAGGTGGTCACCAAGTGGCAATACCTTAGCATATGTAGGCCATAGTTCTATGATTTACTTTGTTGATGATGTTGGACCTTCTCCTCTGGCTCAAAATGTTGCATTCCGTGATTTGCCTCTCCGTGATGTGGGTCAGCATCCACTCTTATTACTTATAGGCGTGGGGTTTGATTGCAATCCAATGGTGTTTGCGGCAGATTTACATGGAATATGGCATTTTATCAAATTTCTTGGGGAAAGAAAGACAACATCTTCAGGTCCGAGATATGGTTCACAGTTTTCTGAAGCATTCGGAAAGCTATATGGCCAACAAAAACATGGATTGAACAATGATGCAAATGAACATTCAAGATCACGAGGAGGCGTCCATGAGAACTGCATCAATTGTATCGTGCCGCTTGGAGAACCAGGGAGTTCTAAAGTAACGCGCTTCAGCACATCAGGATTGGATGGAAAAGTAGTTGTGTGGGATATGGAGAACCAAGCAGATTTGTCGGAGTATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030838 GO:0031334 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

379

Amino Acids

42.39

Weight (kDa)

8.28

Isoelectric Point (pI)

31.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_EML_2	PF23414	4 - 66	4.9e-07	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3	PF25174	5 - 87	1.9e-06	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	8 - 173	5.8e-13	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	8 - 86	2.3e-06	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	9 - 173	2.8e-20	WDR5 beta-propeller domain
WD40_Prp19	PF24814	13 - 171	4.5e-12	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	66 - 174	1e-11	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	90 - 173	8.7e-07	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	100 - 232	6.4e-11	THOC3 beta-propeller domain
ANAPC4_WD40	PF12894	104 - 172	6.1e-06	Anaphase-promoting complex subunit 4 WD40 domain
WD40	PF00400	141 - 171	1.2e-07	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30910 AT2G30910 AT2G30910 AT2G31300 AT2G31300
fragaria_vesca	FvH4_6g37551 FvH4_6g37551 FvH4_6g37551 FvH4_6g37551
malus_domestica	MD09G1156800.v1.1 MD17G1143300.v1.1
prunus_persica	Prupe.3G170000_v2.0.a1
pyrus_communis	pycom09g07550 pycom17g13640
rosa_chinensis	RchiOBHm_Chr2g0095271 RchiOBHm_Chr2g0150441
rosa_laevigata	RLG00000020499
rosa_multiflora	Rmu_co8083376.1_g000001 Rmu_sc0020041.1_g000002 Rmu_ssc0000480.1_g000018
rosa_roxburghii	Rroxscaffold_2G00097100 Rroxscaffold_6G00394160
rosa_rugosa	Rorug02G0421500
rosa_samantha	Rh2AG480700 Rh2DG501700
rosa_wichuraiana	Rw2G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	265
AccB1I	GGYRCC	1 cut(s)	265
AccII	CGCG	3 cut(s)	191, 297, 1057
AciI	CCGC	4 cut(s)	5, 8, 821, 1025
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	934
AcsI	RAATTY	4 cut(s)	229, 575, 588, 854
AcuI	CTGAAG	5 cut(s)	134, 578, 867, 933, 1045
AcyI	GRCGYC	1 cut(s)	993
AdeI	CACNNNGTG	2 cut(s)	308, 644
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	2 cut(s)	757, 896
AgsI	TTSAA	3 cut(s)	573, 955, 978
AjnI	CCWGG	1 cut(s)	1036
AluBI	AGCT	2 cut(s)	598, 928
AluI	AGCT	2 cut(s)	598, 928
AlwI	GGATC	1 cut(s)	262
AoxI	GGCC	3 cut(s)	556, 667, 934
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	4 cut(s)	229, 575, 588, 854
Asp718I	GGTACC	1 cut(s)	265
AspLEI	GCGC	3 cut(s)	191, 299, 1059
AspS9I	GGNCC	3 cut(s)	557, 704, 887
AsuHPI	GGTGA	1 cut(s)	630
AvaII	GGWCC	2 cut(s)	704, 887
BalI	TGGCCA	1 cut(s)	936
BanI	GGYRCC	1 cut(s)	265
BauI	CACGAG	1 cut(s)	984
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	2 cut(s)	488, 1073
BceAI	ACGGC	2 cut(s)	42, 489
BcgI	CGANNNNNNTGC	1 cut(s)	1104
BciT130I	CCWGG	1 cut(s)	1038
BfaI	CTAG	2 cut(s)	248, 476
BfmI	CTRYAG	1 cut(s)	489
BisI	GCNGC	4 cut(s)	6, 300, 822, 1025
BlsI	GCNGC	4 cut(s)	7, 301, 823, 1026
Bme1390I	CCNGG	1 cut(s)	1038
Bme18I	GGWCC	2 cut(s)	704, 887
BmgT120I	GGNCC	3 cut(s)	557, 704, 887
BmiI	GGNNCC	2 cut(s)	56, 267
BmrFI	CCNGG	1 cut(s)	1038
BmsI	GCATC	8 cut(s)	45, 224, 466, 494, 526, 775, 952, 1017
BpmI	CTGGAG	1 cut(s)	205
Bpu10I	CCTNAGC	1 cut(s)	655
BsaBI	GATNNNNATC	1 cut(s)	804
BsaHI	GRCGYC	1 cut(s)	993
BsaJI	CCNNGG	1 cut(s)	1037
BsaXI	ACNNNNNCTCC	1 cut(s)	1118
Bsc4I	CCNNNNNNNGG	2 cut(s)	757, 896
Bse1I	ACTGG	2 cut(s)	188, 401
Bse8I	GATNNNNATC	1 cut(s)	804
BseBI	CCWGG	1 cut(s)	1038
BseDI	CCNNGG	1 cut(s)	1037
BseGI	GGATG	3 cut(s)	457, 766, 1084
BseJI	GATNNNNATC	1 cut(s)	804
BseLI	CCNNNNNNNGG	2 cut(s)	757, 896
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	2 cut(s)	188, 401
BseRI	GAGGAG	2 cut(s)	702, 1002
BseXI	GCAGC	1 cut(s)	286
BsgI	GTGCAG	1 cut(s)	285
Bsh1236I	CGCG	3 cut(s)	191, 297, 1057
BshFI	GGCC	3 cut(s)	558, 669, 936
BshNI	GGYRCC	1 cut(s)	265
BslI	CCNNNNNNNGG	2 cut(s)	757, 896
BsmI	GAATGC	2 cut(s)	731, 917
BsnI	GGCC	3 cut(s)	558, 669, 936
Bsp143I	GATC	6 cut(s)	61, 72, 223, 254, 601, 980
BspACI	CCGC	4 cut(s)	5, 8, 821, 1025
BspANI	GGCC	3 cut(s)	558, 669, 936
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	3 cut(s)	191, 297, 1057
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	56, 267
BspPI	GGATC	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	188, 401
BssECI	CCNNGG	1 cut(s)	1037
BssMI	GATC	6 cut(s)	61, 72, 223, 254, 601, 980
BssNI	GRCGYC	1 cut(s)	993
BssSI	CACGAG	1 cut(s)	984
Bst2BI	CACGAG	1 cut(s)	984
Bst2UI	CCWGG	1 cut(s)	1038
Bst4CI	ACNGT	2 cut(s)	364, 906
Bst6I	CTCTTC	1 cut(s)	439
BstACI	GRCGYC	1 cut(s)	993
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	30, 655
BstEII	GGTNACC	1 cut(s)	636
BstF5I	GGATG	3 cut(s)	457, 766, 1084
BstFNI	CGCG	3 cut(s)	191, 297, 1057
BstHHI	GCGC	3 cut(s)	191, 299, 1059
BstKTI	GATC	6 cut(s)	64, 75, 226, 257, 604, 983
BstMBI	GATC	6 cut(s)	61, 72, 223, 254, 601, 980
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 63
BstNI	CCWGG	1 cut(s)	1038
BstNSI	RCATGY	1 cut(s)	146
BstPI	GGTNACC	1 cut(s)	636
BstSCI	CCNGG	1 cut(s)	1036
BstSFI	CTRYAG	1 cut(s)	489
BstUI	CGCG	3 cut(s)	191, 297, 1057
BstV1I	GCAGC	1 cut(s)	286
BsuRI	GGCC	3 cut(s)	558, 669, 936
BtsCI	GGATG	3 cut(s)	457, 766, 1084
BtsIMutI	CAGTG	1 cut(s)	38
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	3 cut(s)	191, 299, 1059
Cfr13I	GGNCC	3 cut(s)	557, 704, 887
CseI	GACGC	1 cut(s)	982
Csp6I	GTAC	1 cut(s)	266
CspCI	CAANNNNNGTGG	2 cut(s)	110, 145
CviAII	CATG	7 cut(s)	70, 143, 158, 221, 833, 947, 998
CviJI	RGCY	8 cut(s)	57, 289, 558, 598, 669, 719, 928, 936
CviKI_1	RGCY	8 cut(s)	57, 289, 558, 598, 669, 719, 928, 936
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	2 cut(s)	30, 655
DpnI	GATC	6 cut(s)	63, 74, 225, 256, 603, 982
DpnII	GATC	6 cut(s)	61, 72, 223, 254, 601, 980
DraIII	CACNNNGTG	2 cut(s)	308, 644
EaeI	YGGCCR	1 cut(s)	934
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
Eco47I	GGWCC	2 cut(s)	704, 887
Eco57I	CTGAAG	5 cut(s)	134, 578, 867, 933, 1045
Eco91I	GGTNACC	1 cut(s)	636
EcoO65I	GGTNACC	1 cut(s)	636
EcoRI	GAATTC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	1036
FaeI	CATG	7 cut(s)	73, 146, 161, 224, 836, 950, 1001
FalI	AAGNNNNNCTT	2 cut(s)	436, 468
FatI	CATG	7 cut(s)	69, 142, 157, 220, 832, 946, 997
FauNDI	CATATG	1 cut(s)	661
Fnu4HI	GCNGC	4 cut(s)	6, 300, 822, 1025
FokI	GGATG	3 cut(s)	444, 753, 1091
Fsp4HI	GCNGC	4 cut(s)	6, 300, 822, 1025
FspBI	CTAG	2 cut(s)	248, 476
GlaI	GCGC	3 cut(s)	190, 298, 1058
GluI	GCNGC	4 cut(s)	6, 300, 822, 1025
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	3 cut(s)	558, 669, 936
HgaI	GACGC	1 cut(s)	982
HhaI	GCGC	3 cut(s)	191, 299, 1059
Hin1I	GRCGYC	1 cut(s)	993
Hin1II	CATG	7 cut(s)	73, 146, 161, 224, 836, 950, 1001
Hin6I	GCGC	3 cut(s)	189, 297, 1057
HinP1I	GCGC	3 cut(s)	189, 297, 1057
HinfI	GANTC	5 cut(s)	244, 319, 431, 545, 569
HphI	GGTGA	1 cut(s)	630
Hpy166II	GTNNAC	4 cut(s)	19, 103, 410, 902
Hpy188I	TCNGA	9 cut(s)	87, 153, 228, 259, 419, 891, 913, 923, 1126
Hpy188III	TCNNGA	7 cut(s)	221, 241, 248, 549, 978, 984, 1071
Hpy8I	GTNNAC	4 cut(s)	19, 103, 410, 902
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	3 cut(s)	245, 293, 717
HpyCH4III	ACNGT	2 cut(s)	364, 906
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 63
HpyF3I	CTNAG	2 cut(s)	30, 655
Hsp92I	GRCGYC	1 cut(s)	993
Hsp92II	CATG	7 cut(s)	73, 146, 161, 224, 836, 950, 1001
HspAI	GCGC	3 cut(s)	189, 297, 1057
KpnI	GGTACC	1 cut(s)	269
Kzo9I	GATC	6 cut(s)	61, 72, 223, 254, 601, 980
LmnI	GCTCC	3 cut(s)	54, 71, 186
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	8 cut(s)	45, 224, 466, 494, 526, 775, 952, 1017
MaeI	CTAG	2 cut(s)	248, 476
MaeIII	GTNAC	4 cut(s)	208, 439, 636, 1051
MalI	GATC	6 cut(s)	63, 74, 225, 256, 603, 982
MboI	GATC	6 cut(s)	61, 72, 223, 254, 601, 980
MboII	GAAGA	5 cut(s)	140, 426, 464, 584, 873
MfeI	CAATTG	1 cut(s)	1012
MlsI	TGGCCA	1 cut(s)	936
MluCI	AATT	6 cut(s)	165, 229, 575, 588, 854, 1012
MluNI	TGGCCA	1 cut(s)	936
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	3 cut(s)	325, 682, 1104
MnlI	CCTC	6 cut(s)	186, 624, 723, 756, 980, 983
Mox20I	TGGCCA	1 cut(s)	936
MscI	TGGCCA	1 cut(s)	936
MseI	TTAA	2 cut(s)	312, 525
MslI	CAYNNNNRTG	1 cut(s)	108
Msp20I	TGGCCA	1 cut(s)	936
MspR9I	CCNGG	1 cut(s)	1038
MunI	CAATTG	1 cut(s)	1012
Mva1269I	GAATGC	2 cut(s)	731, 917
MvaI	CCWGG	1 cut(s)	1038
MvnI	CGCG	3 cut(s)	191, 297, 1057
MwoI	GCNNNNNNNGC	2 cut(s)	42, 63
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	6 cut(s)	61, 72, 223, 254, 601, 980
NlaIII	CATG	7 cut(s)	73, 146, 161, 224, 836, 950, 1001
NlaIV	GGNNCC	2 cut(s)	56, 267
NmuCI	GTSAC	2 cut(s)	439, 636
NspI	RCATGY	1 cut(s)	146
PagI	TCATGA	1 cut(s)	220
PctI	GAATGC	2 cut(s)	731, 917
PfeI	GAWTC	4 cut(s)	244, 319, 545, 569
PkrI	GCNGC	4 cut(s)	7, 301, 823, 1026
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
Psp6I	CCWGG	1 cut(s)	1036
PspEI	GGTNACC	1 cut(s)	636
PspGI	CCWGG	1 cut(s)	1036
PspN4I	GGNNCC	2 cut(s)	56, 267
PspPI	GGNCC	3 cut(s)	557, 704, 887
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	312, 525
SatI	GCNGC	4 cut(s)	6, 300, 822, 1025
Sau3AI	GATC	6 cut(s)	61, 72, 223, 254, 601, 980
Sau96I	GGNCC	3 cut(s)	557, 704, 887
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	1 cut(s)	1038
SetI	ASST	7 cut(s)	531, 600, 635, 656, 709, 889, 930
SfaNI	GCATC	8 cut(s)	45, 224, 466, 494, 526, 775, 952, 1017
SfcI	CTRYAG	1 cut(s)	489
SinI	GGWCC	2 cut(s)	704, 887
SmiMI	CAYNNNNRTG	1 cut(s)	108
Sse9I	AATT	6 cut(s)	165, 229, 575, 588, 854, 1012
SsiI	CCGC	4 cut(s)	5, 8, 821, 1025
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	2 cut(s)	248, 476
StyD4I	CCNGG	1 cut(s)	1036
TaaI	ACNGT	2 cut(s)	364, 906
TaqI	TCGA	1 cut(s)	534
TasI	AATT	6 cut(s)	165, 229, 575, 588, 854, 1012
TauI	GCSGC	3 cut(s)	8, 824, 1027
TfiI	GAWTC	4 cut(s)	244, 319, 545, 569
Tru1I	TTAA	2 cut(s)	312, 525
Tru9I	TTAA	2 cut(s)	312, 525
TscAI	CASTG	1 cut(s)	38
TseFI	GTSAC	2 cut(s)	439, 636
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	2 cut(s)	439, 636
TspDTI	ATGAA	2 cut(s)	111, 984
TspGWI	ACGGA	2 cut(s)	725, 740
TspRI	CASTG	1 cut(s)	38
VpaK11BI	GGWCC	2 cut(s)	704, 887
XapI	RAATTY	4 cut(s)	229, 575, 588, 854
XbaI	TCTAGA	1 cut(s)	247
XceI	RCATGY	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	2 cut(s)	170, 944
XspI	CTAG	2 cut(s)	248, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.