Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009702

Physical Location & Seq

Genomic Coordinates Forward (+)

7672566 .. 7674378

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g09500.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCTTGTTTCTAGACTATCCGCGGTCAGAACTCAGATGATCAACCATGTAACAAAAGGTCCATTGAAGCCTTCACCAAAGACAGGAAACTTCGGTGGACTTTACAGTGATATTTTCCATACTCCGAAGCATCAAACTTTCTCTACGACAACTGCTCATGAGGAGGGGGATAAAAAAGTAGAAGAAATTTCTGTCACGTTTGTTGACAAGGATGAGATGGAGAAGCATATTAAGGTTCCTGTTGGAATGTCCATGCTAGAAGCTGCTCATGAAAATGACATAGAACTTGAAGGAGCATGTGAAGGATCGTGTGATTGTTCGACATGTCATGTGATTGTGAGAGTATGGAATACTACAATAAACTCGAAGATCCAACTGATGAGGAAAATGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fer2

Protein Analysis

132

Amino Acids

14.62

Weight (kDa)

6.37

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009702)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35300 FvH4_6g35300 FvH4_6g35300 FvH4_6g35300
malus_domestica	MD09G1176800.v1.1 MD17G1150000.v1.1
prunus_persica	Prupe.3G035900_v2.0.a1 Prupe.3G035900_v2.0.a1 Prupe.3G035900_v2.0.a1 Prupe.3G035900_v2.0.a1 Prupe.3G035900_v2.0.a1
pyrus_communis	pycom09g09500 pycom17g14330
rosa_chinensis	RchiOBHm_Chr2g0146741
rosa_laevigata	RLG00000020218
rosa_multiflora	Rmu_co8497987.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099950
rosa_rugosa	Rorug02G0396200 Rorug02G0396200 Rorug02G0396200
rosa_samantha	Rh2DG474500
rosa_wichuraiana	Rw2G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	23
AciI	CCGC	2 cut(s)	21, 23
AclWI	GGATC	2 cut(s)	313, 364
AcsI	RAATTY	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflIII	ACRYGT	1 cut(s)	323
AgsI	TTSAA	2 cut(s)	67, 290
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
AlwI	GGATC	2 cut(s)	313, 364
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	1 cut(s)	186
AspS9I	GGNCC	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	1 cut(s)	211
BclI	TGATCA	1 cut(s)	39
BfaI	CTAG	2 cut(s)	12, 257
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	237
BmsI	GCATC	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	47
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	39, 305, 369
BspACI	CCGC	2 cut(s)	21, 23
BspCNI	CTCAG	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	23
BspHI	TCATGA	2 cut(s)	157, 268
BspLI	GGNNCC	1 cut(s)	237
BspPI	GGATC	2 cut(s)	313, 364
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	3 cut(s)	39, 305, 369
Bst4CI	ACNGT	1 cut(s)	107
BstDEI	CTNAG	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	217
BstFNI	CGCG	1 cut(s)	23
BstKTI	GATC	3 cut(s)	42, 308, 372
BstMBI	GATC	3 cut(s)	39, 305, 369
BstNSI	RCATGY	2 cut(s)	300, 327
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	112
CciI	TCATGA	2 cut(s)	157, 268
Cfr13I	GGNCC	1 cut(s)	59
Cfr42I	CCGCGG	1 cut(s)	24
CviAII	CATG	8 cut(s)	47, 158, 253, 269, 297, 324, 329, 393
CviJI	RGCY	2 cut(s)	70, 263
CviKI_1	RGCY	2 cut(s)	70, 263
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	3 cut(s)	41, 307, 371
DpnII	GATC	3 cut(s)	39, 305, 369
Eco47I	GGWCC	1 cut(s)	59
FaeI	CATG	8 cut(s)	50, 161, 256, 272, 300, 327, 332, 396
FatI	CATG	8 cut(s)	46, 157, 252, 268, 296, 323, 328, 392
FbaI	TGATCA	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	2 cut(s)	12, 257
GluI	GCNGC	1 cut(s)	264
Hin1II	CATG	8 cut(s)	50, 161, 256, 272, 300, 327, 332, 396
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	2 cut(s)	98, 205
Hpy188I	TCNGA	3 cut(s)	29, 36, 126
Hpy188III	TCNNGA	3 cut(s)	12, 158, 269
Hpy8I	GTNNAC	2 cut(s)	98, 205
HpyAV	CCTTC	3 cut(s)	81, 284, 296
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	33
HpySE526I	ACGT	1 cut(s)	197
Hsp92II	CATG	8 cut(s)	50, 161, 256, 272, 300, 327, 332, 396
Ksp22I	TGATCA	1 cut(s)	39
KspI	CCGCGG	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	39, 305, 369
LmnI	GCTCC	1 cut(s)	293
LpnPI	CCDG	2 cut(s)	69, 252
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	2 cut(s)	12, 257
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	2 cut(s)	49, 193
MalI	GATC	3 cut(s)	41, 307, 371
MboI	GATC	3 cut(s)	39, 305, 369
MboII	GAAGA	2 cut(s)	194, 379
MflI	RGATCY	1 cut(s)	369
MluCI	AATT	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	3 cut(s)	154, 157, 375
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	23
MvnI	CGCG	1 cut(s)	23
NdeII	GATC	3 cut(s)	39, 305, 369
NlaIII	CATG	8 cut(s)	50, 161, 256, 272, 300, 327, 332, 396
NlaIV	GGNNCC	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	2 cut(s)	300, 327
PagI	TCATGA	2 cut(s)	157, 268
PciI	ACATGT	1 cut(s)	323
PkrI	GCNGC	1 cut(s)	265
PscI	ACATGT	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	369
RseI	CAYNNNNRTG	1 cut(s)	273
SacII	CCGCGG	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	3 cut(s)	39, 305, 369
Sau96I	GGNCC	1 cut(s)	59
SetI	ASST	4 cut(s)	61, 200, 237, 265
SfaNI	GCATC	1 cut(s)	139
Sfr303I	CCGCGG	1 cut(s)	24
SgrBI	CCGCGG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	2 cut(s)	21, 23
SspMI	CTAG	2 cut(s)	12, 257
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	2 cut(s)	320, 365
TasI	AATT	1 cut(s)	186
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	59
XapI	RAATTY	1 cut(s)	186
XbaI	TCTAGA	1 cut(s)	11
XceI	RCATGY	2 cut(s)	300, 327
XspI	CTAG	2 cut(s)	12, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.