Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009702

Physical Location & Seq

Genomic Coordinates Reverse (-)

60851448 .. 60853609

Gene Structure 2162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G036970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGTTGTTTCTAGATTTTCGGGCCTCGGCAGGCAGATGATCAAGTATCTCAGAAAAGGTCCATTGACATTTTCACCAAAGGCAGGAAACTTATGTGCAAGTTACAATTATTTTTCCCACACTTTGACGCCTCGTACTTTTTCTACAACCACTGCTCATGAGGAAGGGAACAAAGAAATAGAAGAAATATCTGTCATATTTGTTGATAACGATGGGGAGAAGCATGTTAAAGTTCCTGTTGGAAAGTCTATACTAGAAGCTGCTCATGAAAATGATATTGAACTTGAAGATTTGGAGTACTACAATAAACTGGAAGATCCCACTGATGAGGAAAATGACATGCTGGACCTTGCATTCGGGCTCACAGAGATGTCTCGTCTGGGTTGTCAAGTGATTGCAACACCTGAACTCGATGGAATATGCCTTGAACTGCCCGCAGCCACGCGGAACTTTGCTGTCGACAAGTATGCCAAAGCCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fer2

Protein Analysis

160

Amino Acids

17.85

Weight (kDa)

4.76

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009702)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35300 FvH4_6g35300 FvH4_6g35300 FvH4_6g35300
malus_domestica	MD09G1176800.v1.1 MD17G1150000.v1.1
prunus_persica	Prupe.3G035900_v2.0.a1 Prupe.3G035900_v2.0.a1 Prupe.3G035900_v2.0.a1 Prupe.3G035900_v2.0.a1 Prupe.3G035900_v2.0.a1
pyrus_communis	pycom09g09500 pycom17g14330
rosa_chinensis	RchiOBHm_Chr2g0146741
rosa_laevigata	RLG00000020218
rosa_multiflora	Rmu_co8497987.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099950
rosa_rugosa	Rorug02G0396200 Rorug02G0396200 Rorug02G0396200
rosa_samantha	Rh2DG474500
rosa_wichuraiana	Rw2G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	459
AccII	CGCG	1 cut(s)	445
AciI	CCGC	2 cut(s)	435, 445
AclWI	GGATC	1 cut(s)	311
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	2 cut(s)	136, 299
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	3 cut(s)	281, 287, 428
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw26I	GTCTC	1 cut(s)	378
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	2 cut(s)	260, 437
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
AspS9I	GGNCC	3 cut(s)	22, 59, 346
AsuHPI	GGTGA	1 cut(s)	66
AvaII	GGWCC	2 cut(s)	59, 346
BanII	GRGCYC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	247, 449
BccI	CCATC	2 cut(s)	206, 407
BcgI	CGANNNNNNTGC	2 cut(s)	449, 483
BclI	TGATCA	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	378
BfaI	CTAG	3 cut(s)	12, 254, 481
BisI	GCNGC	2 cut(s)	261, 438
BlsI	GCNGC	2 cut(s)	262, 439
BmcAI	AGTACT	1 cut(s)	299
Bme18I	GGWCC	2 cut(s)	59, 346
BmgT120I	GGNCC	3 cut(s)	22, 59, 346
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	64
BseNI	ACTGG	1 cut(s)	315
BseXI	GCAGC	2 cut(s)	247, 449
Bsh1236I	CGCG	1 cut(s)	445
BshFI	GGCC	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	378
BsmI	GAATGC	1 cut(s)	353
BsnI	GGCC	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	2 cut(s)	39, 316
BspACI	CCGC	2 cut(s)	435, 445
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	1 cut(s)	63
BspFNI	CGCG	1 cut(s)	445
BspHI	TCATGA	2 cut(s)	157, 265
BspPI	GGATC	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	2 cut(s)	39, 316
BssNI	GRCGYC	1 cut(s)	128
BstACI	GRCGYC	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	32, 435
BstDEI	CTNAG	1 cut(s)	50
BstFNI	CGCG	1 cut(s)	445
BstKTI	GATC	2 cut(s)	42, 319
BstMAI	GTCTC	1 cut(s)	378
BstMBI	GATC	2 cut(s)	39, 316
BstNSI	RCATGY	2 cut(s)	227, 343
BstUI	CGCG	1 cut(s)	445
BstV1I	GCAGC	2 cut(s)	247, 449
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	24
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	150, 321
Cac8I	GCNNGC	2 cut(s)	32, 435
CciI	TCATGA	2 cut(s)	157, 265
Cfr13I	GGNCC	3 cut(s)	22, 59, 346
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	135, 298
CviAII	CATG	4 cut(s)	158, 224, 266, 340
CviJI	RGCY	5 cut(s)	24, 260, 361, 440, 476
CviKI_1	RGCY	5 cut(s)	24, 260, 361, 440, 476
CviQI	GTAC	2 cut(s)	135, 298
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	2 cut(s)	41, 318
DpnII	GATC	2 cut(s)	39, 316
Eco24I	GRGCYC	1 cut(s)	363
Eco47I	GGWCC	2 cut(s)	59, 346
EcoT38I	GRGCYC	1 cut(s)	363
FaeI	CATG	4 cut(s)	161, 227, 269, 343
FaiI	YATR	9 cut(s)	94, 159, 197, 225, 251, 267, 341, 421, 468
FatI	CATG	4 cut(s)	157, 223, 265, 339
FauI	CCCGC	1 cut(s)	442
FbaI	TGATCA	1 cut(s)	39
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	2 cut(s)	261, 438
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	2 cut(s)	261, 438
FspBI	CTAG	3 cut(s)	12, 254, 481
GluI	GCNGC	2 cut(s)	261, 438
HaeIII	GGCC	1 cut(s)	24
HgaI	GACGC	1 cut(s)	136
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	4 cut(s)	161, 227, 269, 343
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	1 cut(s)	53
Hpy188III	TCNNGA	3 cut(s)	12, 158, 266
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	1 cut(s)	158
HpyCH4V	TGCA	3 cut(s)	98, 353, 398
HpyF3I	CTNAG	1 cut(s)	50
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	4 cut(s)	161, 227, 269, 343
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	39, 316
LpnPI	CCDG	7 cut(s)	16, 69, 249, 296, 329, 365, 417
Lsp1109I	GCAGC	2 cut(s)	247, 449
MaeI	CTAG	3 cut(s)	12, 254, 481
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	2 cut(s)	41, 318
MboI	GATC	2 cut(s)	39, 316
MboII	GAAGA	3 cut(s)	194, 299, 326
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	1 cut(s)	106
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	4 cut(s)	35, 141, 154, 322
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	2 cut(s)	270, 368
Mva1269I	GAATGC	1 cut(s)	353
MvnI	CGCG	1 cut(s)	445
NdeII	GATC	2 cut(s)	39, 316
NlaIII	CATG	4 cut(s)	161, 227, 269, 343
NmeAIII	GCCGAG	1 cut(s)	6
NspI	RCATGY	2 cut(s)	227, 343
PagI	TCATGA	2 cut(s)	157, 265
PctI	GAATGC	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	262, 439
PspPI	GGNCC	3 cut(s)	22, 59, 346
PsuI	RGATCY	1 cut(s)	316
RsaI	GTAC	2 cut(s)	136, 299
RsaNI	GTAC	2 cut(s)	135, 298
RseI	CAYNNNNRTG	2 cut(s)	270, 368
SalI	GTCGAC	1 cut(s)	458
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	261, 438
Sau3AI	GATC	2 cut(s)	39, 316
Sau96I	GGNCC	3 cut(s)	22, 59, 346
ScaI	AGTACT	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	5 cut(s)	61, 262, 351, 406, 482
SinI	GGWCC	2 cut(s)	59, 346
SmiMI	CAYNNNNRTG	2 cut(s)	270, 368
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	2 cut(s)	435, 445
SspMI	CTAG	3 cut(s)	12, 254, 481
TaqI	TCGA	2 cut(s)	411, 459
TasI	AATT	1 cut(s)	106
TatI	WGTACW	1 cut(s)	297
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	2 cut(s)	157, 328
TseI	GCWGC	2 cut(s)	260, 437
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	2 cut(s)	157, 328
VpaK11BI	GGWCC	2 cut(s)	59, 346
XbaI	TCTAGA	1 cut(s)	11
XceI	RCATGY	2 cut(s)	227, 343
XmiI	GTMKAC	1 cut(s)	459
XspI	CTAG	3 cut(s)	12, 254, 481
ZrmI	AGTACT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.