Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009702

Physical Location & Seq

Genomic Coordinates Reverse (-)

11827526 .. 11829442

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g14330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGCTTGTTTCTAGACTATCCGCGGTTAGAACTCAGATGATCAAGCATCTCGTAAAAGCTCCATTGACATCTGCACCAAAGACAGGAAACTTCAGTGGACGTTACAGTTATATTTTCCACAATCCGAAGCATCAAACTTACTCTTCGACAACTGCTCATGAAGAGGGGGATAAAAAAGTAGAAGAAATTTCTGTCACATTTGTTGACAAGGATGAGATGGAAAAGCATATTAAGATTCCCGTTGGAATGTCCATACTAGAAGCTGCTCATGAAAATGACATAGAACTTGAAGGAGCATGTGAAGGATCGTGCGCTTGCTCAACATGTCATGTGATTGTGAGAGTATGGAATACTACAATAAACTCGAAGATCCATCTTATGAGGAAAACGACATGCTGGATCTTGCTTTCGGGCTCACAGAGACGTCCCGTCTGGGTTGTCAAATGGTTGCAAAACCCGAACTTGACGGAATATGCCTTGAACTGCCGAGTGCAACAGGCAACTTTGCTGTTGATAGGTATGCCAAAGCCACATAGAATAGAATTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fer2

Protein Analysis

184

Amino Acids

20.82

Weight (kDa)

8.92

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009702)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35300 FvH4_6g35300 FvH4_6g35300 FvH4_6g35300
malus_domestica	MD09G1176800.v1.1 MD17G1150000.v1.1
prunus_persica	Prupe.3G035900_v2.0.a1 Prupe.3G035900_v2.0.a1 Prupe.3G035900_v2.0.a1 Prupe.3G035900_v2.0.a1 Prupe.3G035900_v2.0.a1
pyrus_communis	pycom09g09500 pycom17g14330
rosa_chinensis	RchiOBHm_Chr2g0146741
rosa_laevigata	RLG00000020218
rosa_multiflora	Rmu_co8497987.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099950
rosa_rugosa	Rorug02G0396200 Rorug02G0396200 Rorug02G0396200
rosa_samantha	Rh2DG474500
rosa_wichuraiana	Rw2G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	427
AccII	CGCG	1 cut(s)	23
AciI	CCGC	2 cut(s)	21, 23
AclWI	GGATC	3 cut(s)	313, 364, 407
AcsI	RAATTY	2 cut(s)	186, 542
AcuI	CTGAAG	1 cut(s)	76
AcyI	GRCGYC	1 cut(s)	424
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflIII	ACRYGT	1 cut(s)	323
AgsI	TTSAA	2 cut(s)	290, 481
AhdI	GACNNNNNGTC	1 cut(s)	428
AluBI	AGCT	2 cut(s)	59, 263
AluI	AGCT	2 cut(s)	59, 263
Alw26I	GTCTC	1 cut(s)	415
AlwI	GGATC	3 cut(s)	313, 364, 407
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	2 cut(s)	186, 542
AspLEI	GCGC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	416
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	2 cut(s)	211, 381
BclI	TGATCA	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	415
BfaI	CTAG	2 cut(s)	12, 257
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
BmeRI	GACNNNNNGTC	1 cut(s)	428
BmsI	GCATC	2 cut(s)	55, 139
BsaHI	GRCGYC	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	57
Bsh1236I	CGCG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	411
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	415
BsmBI	CGTCTC	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	411
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp143I	GATC	4 cut(s)	39, 305, 369, 399
BspACI	CCGC	2 cut(s)	21, 23
BspCNI	CTCAG	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	23
BspHI	TCATGA	2 cut(s)	157, 268
BspPI	GGATC	3 cut(s)	313, 364, 407
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	4 cut(s)	39, 305, 369, 399
BssNI	GRCGYC	1 cut(s)	424
Bst4CI	ACNGT	1 cut(s)	107
Bst6I	CTCTTC	2 cut(s)	148, 156
BstACI	GRCGYC	1 cut(s)	424
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	217
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	4 cut(s)	42, 308, 372, 402
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	4 cut(s)	39, 305, 369, 399
BstNSI	RCATGY	3 cut(s)	300, 327, 396
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	250
BstX2I	RGATCY	2 cut(s)	369, 399
BstYI	RGATCY	2 cut(s)	369, 399
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	316
CciI	TCATGA	2 cut(s)	157, 268
CfoI	GCGC	1 cut(s)	314
Cfr42I	CCGCGG	1 cut(s)	24
CviAII	CATG	6 cut(s)	158, 269, 297, 324, 329, 393
CviJI	RGCY	4 cut(s)	59, 263, 414, 529
CviKI_1	RGCY	4 cut(s)	59, 263, 414, 529
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	4 cut(s)	41, 307, 371, 401
DpnII	GATC	4 cut(s)	39, 305, 369, 399
DriI	GACNNNNNGTC	1 cut(s)	428
Eam1104I	CTCTTC	2 cut(s)	148, 156
Eam1105I	GACNNNNNGTC	1 cut(s)	428
EarI	CTCTTC	2 cut(s)	148, 156
Eco24I	GRGCYC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	542
EcoT38I	GRGCYC	1 cut(s)	416
Esp3I	CGTCTC	1 cut(s)	415
FaeI	CATG	6 cut(s)	161, 272, 300, 327, 332, 396
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	6 cut(s)	157, 268, 296, 323, 328, 392
FbaI	TGATCA	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	416
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	2 cut(s)	12, 257
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	1 cut(s)	264
HhaI	GCGC	1 cut(s)	314
Hin1I	GRCGYC	1 cut(s)	424
Hin1II	CATG	6 cut(s)	161, 272, 300, 327, 332, 396
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	1 cut(s)	235
Hpy166II	GTNNAC	2 cut(s)	98, 205
Hpy188I	TCNGA	2 cut(s)	36, 126
Hpy188III	TCNNGA	3 cut(s)	12, 158, 269
Hpy8I	GTNNAC	2 cut(s)	98, 205
HpyAV	CCTTC	2 cut(s)	284, 296
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	2 cut(s)	100, 424
HpyCH4V	TGCA	3 cut(s)	74, 451, 493
HpyF3I	CTNAG	1 cut(s)	33
HpySE526I	ACGT	2 cut(s)	100, 424
Hsp92I	GRCGYC	1 cut(s)	424
Hsp92II	CATG	6 cut(s)	161, 272, 300, 327, 332, 396
HspAI	GCGC	1 cut(s)	312
Ksp22I	TGATCA	1 cut(s)	39
KspI	CCGCGG	1 cut(s)	24
Kzo9I	GATC	4 cut(s)	39, 305, 369, 399
LmnI	GCTCC	2 cut(s)	64, 293
LpnPI	CCDG	4 cut(s)	69, 382, 418, 482
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	2 cut(s)	55, 139
MaeI	CTAG	2 cut(s)	12, 257
MaeII	ACGT	2 cut(s)	100, 424
MaeIII	GTNAC	2 cut(s)	101, 193
MalI	GATC	4 cut(s)	41, 307, 371, 401
MboI	GATC	4 cut(s)	39, 305, 369, 399
MboII	GAAGA	4 cut(s)	135, 173, 194, 379
MflI	RGATCY	2 cut(s)	369, 399
MhlI	GDGCHC	1 cut(s)	416
MluCI	AATT	2 cut(s)	186, 542
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	2 cut(s)	157, 375
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	23
MvnI	CGCG	1 cut(s)	23
NdeII	GATC	4 cut(s)	39, 305, 369, 399
NlaIII	CATG	6 cut(s)	161, 272, 300, 327, 332, 396
NmeAIII	GCCGAG	1 cut(s)	512
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	3 cut(s)	300, 327, 396
PagI	TCATGA	2 cut(s)	157, 268
PciI	ACATGT	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	265
PscI	ACATGT	1 cut(s)	323
PsuI	RGATCY	2 cut(s)	369, 399
RseI	CAYNNNNRTG	1 cut(s)	273
SacII	CCGCGG	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	4 cut(s)	39, 305, 369, 399
SduI	GDGCHC	1 cut(s)	416
SetI	ASST	5 cut(s)	61, 103, 265, 427, 520
SfaNI	GCATC	2 cut(s)	55, 139
Sfr303I	CCGCGG	1 cut(s)	24
SgrBI	CCGCGG	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	2 cut(s)	186, 542
SsiI	CCGC	2 cut(s)	21, 23
SspMI	CTAG	2 cut(s)	12, 257
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	2 cut(s)	103, 427
TaqI	TCGA	2 cut(s)	146, 365
TasI	AATT	2 cut(s)	186, 542
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	174, 285
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	1 cut(s)	100
XapI	RAATTY	2 cut(s)	186, 542
XbaI	TCTAGA	1 cut(s)	11
XceI	RCATGY	3 cut(s)	300, 327, 396
XspI	CTAG	2 cut(s)	12, 257
ZraI	GACGTC	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.