Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8497987.1

Orthogroup ID

OG0009702

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2696

Gene Structure 2696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8497987.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 616 bp

gtgtctggggttcgagacttgtcttctacacggtaacttcattgaagcagatcatacaggttctgggtggttcctgttaacaatggttgtttctagattttcgggcctcggcaggcagatgatcaagtatctcagaaaaggtccattgacattttcaccaaaggcaggaaacttatgtgcaagttacaattatttttcccatactttgacgcctcgtactttttctacaacaactgctcatgaggaagggaacaaacaaatagaagaaatatctgtgatatttgttgataacgatggggagaagcatgttaaagttcctgttggaaagtctatactagaagctgctcatgaaaatgatattgaacttgaaggagcatgtgaaggatcctgtgcttgttctacatgccatgtgattgtgagagatttggagtactacaataaactggaagatcccactgatgaggaaaatgacatgctggaccttgcattcgggctcacagagacgtctcgtctgggttgtcaagtgattgcaacacctgaactcgatggaatatgccttgaactgcccgcagccacgcggaactttgctgtcgacaagtatgccaaagccacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fer2

Protein Analysis

204

Amino Acids

22.46

Weight (kDa)

4.89

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009702)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35300 FvH4_6g35300 FvH4_6g35300 FvH4_6g35300
malus_domestica	MD09G1176800.v1.1 MD17G1150000.v1.1
prunus_persica	Prupe.3G035900_v2.0.a1 Prupe.3G035900_v2.0.a1 Prupe.3G035900_v2.0.a1 Prupe.3G035900_v2.0.a1 Prupe.3G035900_v2.0.a1
pyrus_communis	pycom09g09500 pycom17g14330
rosa_chinensis	RchiOBHm_Chr2g0146741
rosa_laevigata	RLG00000020218
rosa_multiflora	Rmu_co8497987.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099950
rosa_rugosa	Rorug02G0396200 Rorug02G0396200 Rorug02G0396200
rosa_samantha	Rh2DG474500
rosa_wichuraiana	Rw2G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	507
AccI	GTMKAC	1 cut(s)	592
AccII	CGCG	1 cut(s)	578
AciI	CCGC	2 cut(s)	568, 578
AclWI	GGATC	3 cut(s)	379, 392, 444
AcyI	GRCGYC	2 cut(s)	210, 504
AfaI	GTAC	2 cut(s)	218, 432
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	4 cut(s)	45, 363, 369, 561
AhdI	GACNNNNNGTC	1 cut(s)	508
AluBI	AGCT	1 cut(s)	342
AluI	AGCT	1 cut(s)	342
Alw26I	GTCTC	3 cut(s)	9, 495, 511
AlwI	GGATC	3 cut(s)	379, 392, 444
AlwNI	CAGNNNCTG	1 cut(s)	63
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	342, 570
ArsI	GACNNNNNNTTYG	2 cut(s)	471, 503
AspS9I	GGNCC	3 cut(s)	104, 141, 479
AsuHPI	GGTGA	1 cut(s)	148
AvaII	GGWCC	2 cut(s)	141, 479
BamHI	GGATCC	1 cut(s)	384
BanII	GRGCYC	1 cut(s)	496
BbsI	GAAGAC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	329, 582
BccI	CCATC	2 cut(s)	288, 540
BcgI	CGANNNNNNTGC	2 cut(s)	582, 616
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	3 cut(s)	9, 495, 511
BfaI	CTAG	3 cut(s)	94, 336, 614
BisI	GCNGC	2 cut(s)	343, 571
BlsI	GCNGC	2 cut(s)	344, 572
BmcAI	AGTACT	1 cut(s)	432
Bme18I	GGWCC	2 cut(s)	141, 479
BmeRI	GACNNNNNGTC	1 cut(s)	508
BmgT120I	GGNCC	3 cut(s)	104, 141, 479
BmiI	GGNNCC	2 cut(s)	72, 386
BpiI	GAAGAC	1 cut(s)	15
BsaHI	GRCGYC	2 cut(s)	210, 504
BsaJI	CCNNGG	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	448
BseDI	CCNNGG	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	448
BseXI	GCAGC	2 cut(s)	329, 582
Bsh1236I	CGCG	1 cut(s)	578
BshFI	GGCC	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	3 cut(s)	9, 495, 511
BsmBI	CGTCTC	2 cut(s)	495, 511
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp143I	GATC	4 cut(s)	50, 121, 384, 449
BspACI	CCGC	2 cut(s)	568, 578
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	578
BspHI	TCATGA	2 cut(s)	239, 347
BspLI	GGNNCC	2 cut(s)	72, 386
BspPI	GGATC	3 cut(s)	379, 392, 444
BsrI	ACTGG	1 cut(s)	448
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	4 cut(s)	50, 121, 384, 449
BssNI	GRCGYC	2 cut(s)	210, 504
Bst4CI	ACNGT	1 cut(s)	33
BstACI	GRCGYC	2 cut(s)	210, 504
BstC8I	GCNNGC	2 cut(s)	114, 568
BstDEI	CTNAG	1 cut(s)	132
BstFNI	CGCG	1 cut(s)	578
BstKTI	GATC	4 cut(s)	53, 124, 387, 452
BstMAI	GTCTC	3 cut(s)	9, 495, 511
BstMBI	GATC	4 cut(s)	50, 121, 384, 449
BstNSI	RCATGY	4 cut(s)	309, 379, 406, 476
BstUI	CGCG	1 cut(s)	578
BstV1I	GCAGC	2 cut(s)	329, 582
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	2 cut(s)	384, 449
BstYI	RGATCY	2 cut(s)	384, 449
BsuRI	GGCC	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	454
Cac8I	GCNNGC	2 cut(s)	114, 568
CaiI	CAGNNNCTG	1 cut(s)	63
CciI	TCATGA	2 cut(s)	239, 347
Cfr13I	GGNCC	3 cut(s)	104, 141, 479
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	217, 431
CviAII	CATG	7 cut(s)	240, 306, 348, 376, 403, 408, 473
CviJI	RGCY	5 cut(s)	106, 342, 494, 573, 609
CviKI_1	RGCY	5 cut(s)	106, 342, 494, 573, 609
CviQI	GTAC	2 cut(s)	217, 431
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	4 cut(s)	52, 123, 386, 451
DpnII	GATC	4 cut(s)	50, 121, 384, 449
DriI	GACNNNNNGTC	1 cut(s)	508
Eam1105I	GACNNNNNGTC	1 cut(s)	508
Eco24I	GRGCYC	1 cut(s)	496
Eco47I	GGWCC	2 cut(s)	141, 479
EcoT38I	GRGCYC	1 cut(s)	496
Esp3I	CGTCTC	2 cut(s)	495, 511
FaeI	CATG	7 cut(s)	243, 309, 351, 379, 406, 411, 476
FatI	CATG	7 cut(s)	239, 305, 347, 375, 402, 407, 472
FauI	CCCGC	1 cut(s)	575
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	592
Fnu4HI	GCNGC	2 cut(s)	343, 571
FriOI	GRGCYC	1 cut(s)	496
Fsp4HI	GCNGC	2 cut(s)	343, 571
FspBI	CTAG	3 cut(s)	94, 336, 614
GluI	GCNGC	2 cut(s)	343, 571
HaeIII	GGCC	1 cut(s)	106
HgaI	GACGC	1 cut(s)	218
Hin1I	GRCGYC	2 cut(s)	210, 504
Hin1II	CATG	7 cut(s)	243, 309, 351, 379, 406, 411, 476
HincII	GTYRAC	2 cut(s)	79, 593
HindII	GTYRAC	2 cut(s)	79, 593
HpaI	GTTAAC	1 cut(s)	79
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	2 cut(s)	79, 593
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	4 cut(s)	14, 94, 240, 348
Hpy8I	GTNNAC	2 cut(s)	79, 593
HpyAV	CCTTC	3 cut(s)	240, 363, 375
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	3 cut(s)	180, 486, 531
HpyF3I	CTNAG	1 cut(s)	132
HpySE526I	ACGT	1 cut(s)	504
Hsp92I	GRCGYC	2 cut(s)	210, 504
Hsp92II	CATG	7 cut(s)	243, 309, 351, 379, 406, 411, 476
Ksp22I	TGATCA	1 cut(s)	121
KspAI	GTTAAC	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	50, 121, 384, 449
LmnI	GCTCC	1 cut(s)	372
Lsp1109I	GCAGC	2 cut(s)	329, 582
MaeI	CTAG	3 cut(s)	94, 336, 614
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	2 cut(s)	33, 183
MalI	GATC	4 cut(s)	52, 123, 386, 451
MboI	GATC	4 cut(s)	50, 121, 384, 449
MboII	GAAGA	3 cut(s)	15, 276, 459
MflI	RGATCY	2 cut(s)	384, 449
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	4 cut(s)	117, 223, 236, 455
MseI	TTAA	2 cut(s)	78, 310
MslI	CAYNNNNRTG	1 cut(s)	352
Mva1269I	GAATGC	1 cut(s)	486
MvnI	CGCG	1 cut(s)	578
NdeII	GATC	4 cut(s)	50, 121, 384, 449
NlaIII	CATG	7 cut(s)	243, 309, 351, 379, 406, 411, 476
NlaIV	GGNNCC	2 cut(s)	72, 386
NmeAIII	GCCGAG	1 cut(s)	88
NspI	RCATGY	4 cut(s)	309, 379, 406, 476
PagI	TCATGA	2 cut(s)	239, 347
PctI	GAATGC	1 cut(s)	486
PkrI	GCNGC	2 cut(s)	344, 572
PspN4I	GGNNCC	2 cut(s)	72, 386
PspPI	GGNCC	3 cut(s)	104, 141, 479
PstNI	CAGNNNCTG	1 cut(s)	63
PsuI	RGATCY	2 cut(s)	384, 449
RsaI	GTAC	2 cut(s)	218, 432
RsaNI	GTAC	2 cut(s)	217, 431
RseI	CAYNNNNRTG	1 cut(s)	352
SalI	GTCGAC	1 cut(s)	591
SaqAI	TTAA	2 cut(s)	78, 310
SatI	GCNGC	2 cut(s)	343, 571
Sau3AI	GATC	4 cut(s)	50, 121, 384, 449
Sau96I	GGNCC	3 cut(s)	104, 141, 479
ScaI	AGTACT	1 cut(s)	432
SduI	GDGCHC	1 cut(s)	496
SetI	ASST	7 cut(s)	62, 143, 344, 484, 507, 539, 615
SinI	GGWCC	2 cut(s)	141, 479
SmiMI	CAYNNNNRTG	1 cut(s)	352
Sse9I	AATT	1 cut(s)	188
SsiI	CCGC	2 cut(s)	568, 578
SspMI	CTAG	3 cut(s)	94, 336, 614
TaaI	ACNGT	1 cut(s)	33
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	3 cut(s)	13, 544, 592
TasI	AATT	1 cut(s)	188
TatI	WGTACW	1 cut(s)	430
Tru1I	TTAA	2 cut(s)	78, 310
Tru9I	TTAA	2 cut(s)	78, 310
TscAI	CASTG	1 cut(s)	461
TseI	GCWGC	2 cut(s)	342, 570
TspDTI	ATGAA	2 cut(s)	29, 364
TspRI	CASTG	1 cut(s)	461
VpaK11BI	GGWCC	2 cut(s)	141, 479
XbaI	TCTAGA	1 cut(s)	93
XceI	RCATGY	4 cut(s)	309, 379, 406, 476
XmiI	GTMKAC	1 cut(s)	592
XspI	CTAG	3 cut(s)	94, 336, 614
ZraI	GACGTC	1 cut(s)	505
ZrmI	AGTACT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.