Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003592

Physical Location & Seq

Genomic Coordinates Reverse (-)

9214762 .. 9218339

Gene Structure 3578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g11060.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCAAACTCTATCAGTGGCTTTTCCGCCGATGAGTGCGAGACTAGTGACAGTGAGAGCTTCCGTGGATACACAGCAAAGACTCTCATACAACCGCAACGCTCCAAGAAAGATACAGAAAAGCGAAAGCCCCGCCACCGCCAAACCTCCTCCAACCGTCACACTAACCACCACAACTACCCGAACGGCCGACTCCGTTGTTGACCTCCTCAAACGCACACCTCAAGGGGAAACAGTACAAATGGATGAGTTATACTTGGGCTATGAGCGATGGTCACCTACTCCAACAAAGGTACAAAAGCGTTTGCCTAGTCCACCAAAGGTACAGAAGCCTCGGTCTGTACTCAATGCGGCATCGCTAGCTTATATCGGTGATTGCATGTACGAGCTATATGCTCGCAGGCATTTTTTGTTTCCTCCCCTGAATATTGAAGAATATAATGATCGTGTGATGGCAGTTGTACGTTGTGAAGCACAGGATGCACTGCTCCGGAAACTTCTGAGTGATGATTTTTTATTAGAAGAAGAAAGGAATGTTCTCCGGTGGGGAAAGAATATTGGTTCAGCAAAAACCCGAACAAAAAAACGTGCTGGTTCAGCAGCTTATAACAGAGCATCTTCCTTGGAAGCATTGGTTGGTTATCTCTACCTGACAAATATGGATCGCTTAGAAGAAGTCATGATAAAGTTGGGATTCTCAACTGATTCTTCTGTGCAGATAATTTCAGAGGAGCCTGAGGAGGTAAACGGCACGCATCCTAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_3

Protein Analysis

256

Amino Acids

28.74

Weight (kDa)

9.13

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55140 AT1G55140 AT3G13740 AT3G13740 AT3G13740 AT3G13740 AT3G13740 AT3G13740
fragaria_vesca	FvH4_4g12940 FvH4_4g12940 FvH4_4g12940 FvH4_4g12940 FvH4_4g12940 FvH4_4g12940 FvH4_4g12940 FvH4_4g12940
malus_domestica	MD09G1194100.v1.1
prunus_persica	Prupe.3G050600_v2.0.a1 Prupe.3G050600_v2.0.a1
pyrus_communis	pycom09g11060
rosa_chinensis	RchiOBHm_Chr6g0267021
rosa_laevigata	RLG00000014049
rosa_multiflora	Rmu_sc0013804.1_g000009
rosa_roxburghii	Rroxscaffold_7G00201220
rosa_rugosa	Rorug06G0028400 Rorug06G0028500 Rorug06G0028600
rosa_samantha	Rh4CG185500 Rh4DG170200 Rh6AG150100 Rh6BG151000 Rh6CG146200 Rh6DG135100
rosa_wichuraiana	Rw4G014630 Rw6G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
AccIII	TCCGGA	1 cut(s)	489
AciI	CCGC	5 cut(s)	26, 94, 132, 138, 350
AclWI	GGATC	1 cut(s)	669
AcoI	YGGCCR	1 cut(s)	186
AfaI	GTAC	6 cut(s)	237, 294, 324, 342, 383, 462
AgsI	TTSAA	1 cut(s)	431
AhlI	ACTAGT	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	618, 650
AluBI	AGCT	4 cut(s)	59, 362, 388, 602
AluI	AGCT	4 cut(s)	59, 362, 388, 602
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	1 cut(s)	669
Aor13HI	TCCGGA	1 cut(s)	489
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	599
AsuHPI	GGTGA	2 cut(s)	267, 383
AsuNHI	GCTAGC	1 cut(s)	358
AxyI	CCTNAGG	1 cut(s)	735
BbvI	GCAGC	1 cut(s)	611
BccI	CCATC	2 cut(s)	264, 445
BceAI	ACGGC	2 cut(s)	201, 763
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BciVI	GTATCC	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	34
BcuI	ACTAGT	1 cut(s)	43
BfaI	CTAG	4 cut(s)	44, 309, 359, 759
BfuI	GTATCC	1 cut(s)	61
BisI	GCNGC	2 cut(s)	351, 600
BlsI	GCNGC	2 cut(s)	352, 601
BmiI	GGNNCC	1 cut(s)	732
BmsI	GCATC	4 cut(s)	362, 469, 623, 763
BmtI	GCTAGC	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	207
BsaJI	CCNNGG	3 cut(s)	63, 332, 621
BsaWI	WCCGGW	2 cut(s)	489, 540
Bse21I	CCTNAGG	1 cut(s)	735
BseAI	TCCGGA	1 cut(s)	489
BseDI	CCNNGG	3 cut(s)	63, 332, 621
BseGI	GGATG	3 cut(s)	250, 484, 754
BseMII	CTCAG	2 cut(s)	491, 726
BseRI	GAGGAG	4 cut(s)	138, 197, 743, 752
BseX3I	CGGCCG	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	611
BsgI	GTGCAG	1 cut(s)	734
Bsh1285I	CGRYCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	188
BsiEI	CGRYCG	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	490, 541
BsmAI	GTCTC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	188
Bsp13I	TCCGGA	1 cut(s)	489
Bsp143I	GATC	2 cut(s)	442, 661
BspACI	CCGC	5 cut(s)	26, 94, 132, 138, 350
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	2 cut(s)	492, 727
BspEI	TCCGGA	1 cut(s)	489
BspHI	TCATGA	1 cut(s)	678
BspLI	GGNNCC	1 cut(s)	732
BspOI	GCTAGC	1 cut(s)	362
BspPI	GGATC	1 cut(s)	669
BssECI	CCNNGG	3 cut(s)	63, 332, 621
BssMI	GATC	2 cut(s)	442, 661
BssT1I	CCWWGG	1 cut(s)	621
Bst4CI	ACNGT	3 cut(s)	52, 157, 235
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstC8I	GCNNGC	4 cut(s)	360, 397, 401, 752
BstDEI	CTNAG	3 cut(s)	500, 667, 735
BstDSI	CCRYGG	1 cut(s)	63
BstEII	GGTNACC	1 cut(s)	273
BstF5I	GGATG	3 cut(s)	250, 484, 754
BstKTI	GATC	2 cut(s)	445, 664
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	2 cut(s)	442, 661
BstMCI	CGRYCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	3 cut(s)	359, 479, 596
BstNSI	RCATGY	1 cut(s)	382
BstPI	GGTNACC	1 cut(s)	273
BstV1I	GCAGC	1 cut(s)	611
BstZI	CGGCCG	1 cut(s)	186
Bsu36I	CCTNAGG	1 cut(s)	735
BsuI	GTATCC	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	63
BtgZI	GCGATG	2 cut(s)	283, 339
BtsCI	GGATG	3 cut(s)	250, 484, 754
BtsI	GCAGTG	1 cut(s)	482
BtsIMutI	CAGTG	3 cut(s)	21, 57, 482
Cac8I	GCNNGC	4 cut(s)	360, 397, 401, 752
CciI	TCATGA	1 cut(s)	678
Csp6I	GTAC	6 cut(s)	236, 293, 323, 341, 382, 461
CviAII	CATG	2 cut(s)	379, 679
CviQI	GTAC	6 cut(s)	236, 293, 323, 341, 382, 461
DdeI	CTNAG	3 cut(s)	500, 667, 735
DpnI	GATC	2 cut(s)	444, 663
DpnII	GATC	2 cut(s)	442, 661
EaeI	YGGCCR	1 cut(s)	186
EagI	CGGCCG	1 cut(s)	186
EciI	GGCGGA	1 cut(s)	15
EclXI	CGGCCG	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	621
Eco52I	CGGCCG	1 cut(s)	186
Eco81I	CCTNAGG	1 cut(s)	735
Eco91I	GGTNACC	1 cut(s)	273
EcoO65I	GGTNACC	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	621
FaeI	CATG	2 cut(s)	382, 682
FatI	CATG	2 cut(s)	378, 678
FauI	CCCGC	1 cut(s)	139
Fnu4HI	GCNGC	2 cut(s)	351, 600
FokI	GGATG	3 cut(s)	257, 491, 741
Fsp4HI	GCNGC	2 cut(s)	351, 600
FspBI	CTAG	4 cut(s)	44, 309, 359, 759
GluI	GCNGC	2 cut(s)	351, 600
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	2 cut(s)	490, 541
Hin1II	CATG	2 cut(s)	382, 682
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	4 cut(s)	81, 191, 693, 704
HpaII	CCGG	2 cut(s)	490, 541
HphI	GGTGA	2 cut(s)	267, 383
Hpy166II	GTNNAC	3 cut(s)	202, 314, 745
Hpy188I	TCNGA	2 cut(s)	501, 727
Hpy188III	TCNNGA	2 cut(s)	490, 679
Hpy8I	GTNNAC	3 cut(s)	202, 314, 745
HpyCH4III	ACNGT	3 cut(s)	52, 157, 235
HpyCH4IV	ACGT	2 cut(s)	463, 586
HpyCH4V	TGCA	4 cut(s)	4, 378, 482, 715
HpyF10VI	GCNNNNNNNGC	3 cut(s)	359, 479, 596
HpyF3I	CTNAG	3 cut(s)	500, 667, 735
HpySE526I	ACGT	2 cut(s)	463, 586
Hsp92II	CATG	2 cut(s)	382, 682
Kpn2I	TCCGGA	1 cut(s)	489
Kzo9I	GATC	2 cut(s)	442, 661
LmnI	GCTCC	3 cut(s)	106, 492, 730
LpnPI	CCDG	8 cut(s)	385, 434, 461, 503, 554, 576, 662, 747
Lsp1109I	GCAGC	1 cut(s)	611
LweI	GCATC	4 cut(s)	362, 469, 623, 763
MaeI	CTAG	4 cut(s)	44, 309, 359, 759
MaeII	ACGT	2 cut(s)	463, 586
MaeIII	GTNAC	3 cut(s)	46, 157, 273
MalI	GATC	2 cut(s)	444, 663
MboI	GATC	2 cut(s)	442, 661
MboII	GAAGA	6 cut(s)	443, 533, 536, 609, 683, 699
MluCI	AATT	1 cut(s)	720
MlyI	GAGTC	2 cut(s)	75, 185
MmeI	TCCRAC	2 cut(s)	176, 308
MroI	TCCGGA	1 cut(s)	489
MslI	CAYNNNNRTG	1 cut(s)	759
MspI	CCGG	2 cut(s)	490, 541
MwoI	GCNNNNNNNGC	3 cut(s)	359, 479, 596
NdeII	GATC	2 cut(s)	442, 661
NheI	GCTAGC	1 cut(s)	358
NlaIII	CATG	2 cut(s)	382, 682
NlaIV	GGNNCC	1 cut(s)	732
NmuCI	GTSAC	3 cut(s)	46, 157, 273
NspI	RCATGY	1 cut(s)	382
PagI	TCATGA	1 cut(s)	678
PfeI	GAWTC	2 cut(s)	693, 704
PkrI	GCNGC	2 cut(s)	352, 601
PleI	GAGTC	2 cut(s)	75, 185
PpsI	GAGTC	2 cut(s)	75, 185
PsiI	TTATAA	1 cut(s)	606
PspEI	GGTNACC	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	732
RsaI	GTAC	6 cut(s)	237, 294, 324, 342, 383, 462
RsaNI	GTAC	6 cut(s)	236, 293, 323, 341, 382, 461
RseI	CAYNNNNRTG	1 cut(s)	759
SatI	GCNGC	2 cut(s)	351, 600
Sau3AI	GATC	2 cut(s)	442, 661
SchI	GAGTC	2 cut(s)	75, 185
SfaNI	GCATC	4 cut(s)	362, 469, 623, 763
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
SpeI	ACTAGT	1 cut(s)	43
Sse9I	AATT	1 cut(s)	720
SsiI	CCGC	5 cut(s)	26, 94, 132, 138, 350
SspI	AATATT	2 cut(s)	427, 556
SspMI	CTAG	4 cut(s)	44, 309, 359, 759
StyI	CCWWGG	1 cut(s)	621
TaaI	ACNGT	3 cut(s)	52, 157, 235
TaiI	ACGT	2 cut(s)	466, 589
TaqII	GACCGA	1 cut(s)	324
TasI	AATT	1 cut(s)	720
TatI	WGTACW	2 cut(s)	235, 340
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	2 cut(s)	693, 704
TscAI	CASTG	3 cut(s)	21, 57, 489
TseFI	GTSAC	3 cut(s)	46, 157, 273
TseI	GCWGC	1 cut(s)	599
Tsp45I	GTSAC	3 cut(s)	46, 157, 273
TspGWI	ACGGA	2 cut(s)	52, 184
TspRI	CASTG	3 cut(s)	21, 57, 489
XceI	RCATGY	1 cut(s)	382
XspI	CTAG	4 cut(s)	44, 309, 359, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.