pycom09g11320

Occludin homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0005746
Physical Location & Seq
Forward (+)
9566026 .. 9569126
3101 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1632 bp
ATGGTATCTGGGATAAAGCACTCTGATGAGAAATCTGAACGCAAAAATAGATTAAAAACAGAAATATCACAGCAACCTTCTCACAGTTTGTCTCCTGATAGACTTGTTGAAGGCTCTCATAAGGACCCCGTCTCTCAAACGATTAGTAGAGATGATAGGGATGGGAATATTGAATCCGGATCCCTAAAGGCTTGCAACCAAGCATTTTCTGGCAGATATACTTCAGAGTTTAAACAATCAAGTCGGAAGTCTTTTGATCATAATTTACAGACAAAAGTTCCTGATTCAGCAGAAAAACCAGATAGATATGCCGAAAACTTAGGGCATGGCGGGAAGTACTCTGAAAAGAGCTCTCAAATGCACGAAGGTTTCCTCCCTCAAAAAGATAAACTTTATAGAGATACTCAAAATGAGGATGGTTATGCTAATGAGAGAAAGGTTCCAAGAAATTCTAAGGAAGGTGGTACCCGAGGCAAACAGTCAGTGCCCTTGGATCCTCATTACCAGAAAGACGGTGATGTGGCTGGAAAGATCAAGGGGAATGCACAAATTTCCAGCCTGTTACTGGGGGGTTCACCAAAGGATAACAGCAGAAATGGTGCAGACACATCCCCTGTTCATGGCAGAGGCAGTAAACTCCAAAGAGAGTTTTCAGACTTGGAGTTGGGCGAACTTCGTGAGCCCTTGCTTGAGGAAACGCCAGTTAAGAAGCAATTTGAGAGGAAAAGTTCTTTTAAGCAGTCAGATAACAAAACGAGCACTTCAGAGAACAGGGTTTCTGAATTCGGTAAAGTGAAACCTGCAGGAAAGGCAAATTTTGATTTGCGAAGGCCATCCCCTCCAGATTTAAACTCTAAGCTTCCATGTAATCAGGAAGGCTTGAATAAAAAGAGGAACTATGAAGATCGCGTTGAGGATTTAACAAGGTCGCAACAGAGAGCTGTGCAGTCTCAGTCACAGCACCCATCACTAGTAGATCATCCTGATGTGGGGCGTTCGTTTAGCAAAACAGTGGATCTTACTAGTAAATCTCGACAGAATGAAGCTGGAGGCAGACAAGCAATTGGTGTGGCTGGACATGGAGAAAGCAATAAGAAAGCAACCTCAAGTGCTCCTCAGCAGCTTGACTCAAAGCGAAGGCTAGTTTCCCAACCCATACAAGAAAGTAAAAGACATGCACCCAATATAATGGTGGATTCAACTGATGTACCCAAGAAATCAATGGTGGCAGAGGGCATTGACAGTGATAGAAAAAAGAGGGATTCTTCTTCAGATGAGAATAGTTGTTCTTATTCTAAGTATGAGAAAAATGAGCCCGAGTTCAAGGGACCAATAAAAGATTTTTCTCAGTACAAAGAGTATGTGCAAGAATATCGTGATAAGTATGATAGCTATTGCTCGTTGAACAAGACCCTAGAGAGTTACAGGAATGAGTTTGAAAAGCTAGGAACGGACCTTTATGCTACTAGAGGCACAGAGAAATATTATAACATTGTGGAGCAGCTGAAGGATTCATATCGTCAATGTGGAACGAGACATAAGAGGCTGAAAGGAATATTTGTGGTACTTCATGAAGAATTGAAGCAACTTAAGCAAAGGATTAAGGACTTTGCAGTCTCATACATGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Occludin_ELL

Protein Analysis

544

Amino Acids

61.43

Weight (kDa)

9.25

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Occludin_ELL PF07303 443 - 538 1.7e-18 Occludin homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1488
AasI GACNNNNNNGTC 1 cut(s) 1613
Acc36I ACCTGC 1 cut(s) 808
Acc65I GGTACC 1 cut(s) 464
AccB1I GGYRCC 1 cut(s) 464
AccII CGCG 1 cut(s) 909
AccIII TCCGGA 1 cut(s) 176
AciI CCGC 1 cut(s) 330
AclWI GGATC 5 cut(s) 174, 187, 488, 501, 1023
AcsI RAATTY 4 cut(s) 448, 549, 782, 814
AcuI CTGAAG 4 cut(s) 207, 747, 1254, 1526
AfaI GTAC 5 cut(s) 338, 466, 1209, 1352, 1566
AfiI CCNNNNNNNGG 3 cut(s) 565, 620, 989
AflII CTTAAG 1 cut(s) 1589
AgsI TTSAA 8 cut(s) 110, 173, 883, 1200, 1324, 1405, 1439, 1582
AhlI ACTAGT 2 cut(s) 970, 1022
AluBI AGCT 8 cut(s) 351, 859, 941, 1046, 1123, 1392, 1444, 1504
AluI AGCT 8 cut(s) 351, 859, 941, 1046, 1123, 1392, 1444, 1504
Alw21I GWGCWC 3 cut(s) 353, 761, 1114
Alw26I GTCTC 5 cut(s) 96, 136, 954, 1528, 1621
AlwI GGATC 5 cut(s) 174, 187, 488, 501, 1023
Ama87I CYCGRG 2 cut(s) 468, 1316
Aor13HI TCCGGA 1 cut(s) 176
AoxI GGCC 2 cut(s) 830, 1626
ApeKI GCWGC 2 cut(s) 1120, 1501
ApoI RAATTY 4 cut(s) 448, 549, 782, 814
Asp718I GGTACC 1 cut(s) 464
AspS9I GGNCC 3 cut(s) 124, 1328, 1453
AsuHPI GGTGA 2 cut(s) 527, 567
AvaI CYCGRG 2 cut(s) 468, 1316
AvaII GGWCC 3 cut(s) 124, 1328, 1453
BaeGI GKGCMC 1 cut(s) 489
BaeI ACNNNNGTAYC 2 cut(s) 1191, 1224
BamHI GGATCC 2 cut(s) 179, 493
BanI GGYRCC 1 cut(s) 464
BanII GRGCYC 3 cut(s) 353, 684, 1317
Bbv12I GWGCWC 3 cut(s) 353, 761, 1114
BbvCI CCTCAGC 1 cut(s) 1116
BbvI GCAGC 2 cut(s) 1132, 1513
BccI CCATC 4 cut(s) 155, 410, 841, 973
BcgI CGANNNNNNTGC 2 cut(s) 1355, 1389
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 5 cut(s) 96, 136, 954, 1528, 1621
BcuI ACTAGT 2 cut(s) 970, 1022
BfaI CTAG 6 cut(s) 971, 1023, 1142, 1415, 1445, 1467
BfmI CTRYAG 1 cut(s) 801
BfrI CTTAAG 1 cut(s) 1589
BfuAI ACCTGC 1 cut(s) 808
BisI GCNGC 2 cut(s) 1121, 1502
BlsI GCNGC 2 cut(s) 1122, 1503
BmcAI AGTACT 1 cut(s) 338
Bme18I GGWCC 3 cut(s) 124, 1328, 1453
BmeT110I CYCGRG 2 cut(s) 468, 1316
BmgT120I GGNCC 3 cut(s) 124, 1328, 1453
BmiI GGNNCC 6 cut(s) 126, 181, 441, 466, 495, 1329
BmrI ACTGGG 1 cut(s) 575
BmuI ACTGGG 1 cut(s) 575
BpmI CTGGAG 2 cut(s) 825, 1068
Bpu10I CCTNAGC 1 cut(s) 1116
BpuEI CTTGAG 2 cut(s) 710, 1090
BsaBI GATNNNNATC 1 cut(s) 1515
BsaJI CCNNGG 2 cut(s) 469, 489
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 3 cut(s) 565, 620, 989
Bse1I ACTGG 2 cut(s) 570, 701
Bse8I GATNNNNATC 1 cut(s) 1515
BseAI TCCGGA 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 469, 489
BseGI GGATG 5 cut(s) 166, 421, 608, 833, 979
BseJI GATNNNNATC 1 cut(s) 1515
BseLI CCNNNNNNNGG 3 cut(s) 565, 620, 989
BseMII CTCAG 3 cut(s) 965, 1130, 1361
BseNI ACTGG 2 cut(s) 570, 701
BseRI GAGGAG 1 cut(s) 1104
BseSI GKGCMC 1 cut(s) 489
BseXI GCAGC 2 cut(s) 1132, 1513
BsgI GTGCAG 2 cut(s) 621, 965
Bsh1236I CGCG 1 cut(s) 909
BshFI GGCC 2 cut(s) 832, 1628
BshNI GGYRCC 1 cut(s) 464
BsiHKAI GWGCWC 3 cut(s) 353, 761, 1114
BsiHKCI CYCGRG 2 cut(s) 468, 1316
BsiSI CCGG 1 cut(s) 177
BslFI GGGAC 1 cut(s) 1341
BslI CCNNNNNNNGG 3 cut(s) 565, 620, 989
BsmAI GTCTC 5 cut(s) 96, 136, 954, 1528, 1621
BsmBI CGTCTC 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 1341
BsmI GAATGC 1 cut(s) 547
BsnI GGCC 2 cut(s) 832, 1628
BsoBI CYCGRG 2 cut(s) 468, 1316
Bsp1286I GDGCHC 6 cut(s) 353, 489, 684, 761, 1114, 1317
Bsp13I TCCGGA 1 cut(s) 176
Bsp143I GATC 7 cut(s) 179, 256, 493, 531, 904, 976, 1015
BspACI CCGC 1 cut(s) 330
BspANI GGCC 2 cut(s) 832, 1628
BspCNI CTCAG 3 cut(s) 964, 1129, 1360
BspEI TCCGGA 1 cut(s) 176
BspFNI CGCG 1 cut(s) 909
BspHI TCATGA 1 cut(s) 1570
BspLI GGNNCC 6 cut(s) 126, 181, 441, 466, 495, 1329
BspMAI CTGCAG 1 cut(s) 805
BspMI ACCTGC 1 cut(s) 808
BspPI GGATC 5 cut(s) 174, 187, 488, 501, 1023
BspT107I GGYRCC 1 cut(s) 464
BspTI CTTAAG 1 cut(s) 1589
BsrI ACTGG 2 cut(s) 570, 701
BssECI CCNNGG 2 cut(s) 469, 489
BssMI GATC 7 cut(s) 179, 256, 493, 531, 904, 976, 1015
BssT1I CCWWGG 1 cut(s) 489
Bst4CI ACNGT 5 cut(s) 86, 480, 515, 1012, 1244
BstAFI CTTAAG 1 cut(s) 1589
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 7 cut(s) 319, 453, 855, 951, 1116, 1296, 1347
BstF5I GGATG 5 cut(s) 166, 421, 608, 833, 979
BstFNI CGCG 1 cut(s) 909
BstKTI GATC 7 cut(s) 182, 259, 496, 534, 907, 979, 1018
BstMAI GTCTC 5 cut(s) 96, 136, 954, 1528, 1621
BstMBI GATC 7 cut(s) 179, 256, 493, 531, 904, 976, 1015
BstMWI GCNNNNNNNGC 2 cut(s) 809, 1591
BstNSI RCATGY 1 cut(s) 1178
BstSFI CTRYAG 1 cut(s) 801
BstSLI GKGCMC 1 cut(s) 489
BstUI CGCG 1 cut(s) 909
BstV1I GCAGC 2 cut(s) 1132, 1513
BstX2I RGATCY 3 cut(s) 179, 493, 1015
BstXI CCANNNNNNTGG 1 cut(s) 1189
BstYI RGATCY 3 cut(s) 179, 493, 1015
BsuRI GGCC 2 cut(s) 832, 1628
BtsCI GGATG 5 cut(s) 166, 421, 608, 833, 979
BtsIMutI CAGTG 3 cut(s) 489, 1017, 1249
BveI ACCTGC 1 cut(s) 808
Cac8I GCNNGC 1 cut(s) 193
CciI TCATGA 1 cut(s) 1570
Cfr13I GGNCC 3 cut(s) 124, 1328, 1453
Csp6I GTAC 5 cut(s) 337, 465, 1208, 1351, 1565
CspCI CAANNNNNGTGG 2 cut(s) 1050, 1085
CviAII CATG 7 cut(s) 326, 620, 864, 1079, 1175, 1571, 1624
CviQI GTAC 5 cut(s) 337, 465, 1208, 1351, 1565
DdeI CTNAG 7 cut(s) 319, 453, 855, 951, 1116, 1296, 1347
DpnI GATC 7 cut(s) 181, 258, 495, 533, 906, 978, 1017
DpnII GATC 7 cut(s) 179, 256, 493, 531, 904, 976, 1015
DraI TTTAAA 2 cut(s) 232, 849
DrdI GACNNNNNNGTC 1 cut(s) 1613
DseDI GACNNNNNNGTC 1 cut(s) 1613
Ecl136II GAGCTC 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 489
Eco24I GRGCYC 3 cut(s) 353, 684, 1317
Eco47I GGWCC 3 cut(s) 124, 1328, 1453
Eco53kI GAGCTC 1 cut(s) 351
Eco57I CTGAAG 4 cut(s) 207, 747, 1254, 1526
Eco88I CYCGRG 2 cut(s) 468, 1316
EcoICRI GAGCTC 1 cut(s) 351
EcoO109I RGGNCCY 1 cut(s) 124
EcoRI GAATTC 1 cut(s) 782
EcoT14I CCWWGG 1 cut(s) 489
EcoT38I GRGCYC 3 cut(s) 353, 684, 1317
ErhI CCWWGG 1 cut(s) 489
Esp3I CGTCTC 1 cut(s) 136
FaeI CATG 7 cut(s) 329, 623, 867, 1082, 1178, 1574, 1627
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 1 cut(s) 1341
FatI CATG 7 cut(s) 325, 619, 863, 1078, 1174, 1570, 1623
FauI CCCGC 1 cut(s) 323
FbaI TGATCA 1 cut(s) 256
Fnu4HI GCNGC 2 cut(s) 1121, 1502
FokI GGATG 5 cut(s) 173, 428, 595, 820, 966
FriOI GRGCYC 3 cut(s) 353, 684, 1317
Fsp4HI GCNGC 2 cut(s) 1121, 1502
FspBI CTAG 6 cut(s) 971, 1023, 1142, 1415, 1445, 1467
GluI GCNGC 2 cut(s) 1121, 1502
GsuI CTGGAG 2 cut(s) 825, 1068
HaeIII GGCC 2 cut(s) 832, 1628
HapII CCGG 1 cut(s) 177
Hin1II CATG 7 cut(s) 329, 623, 867, 1082, 1178, 1574, 1627
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 6 cut(s) 173, 284, 1127, 1196, 1262, 1511
HpaII CCGG 1 cut(s) 177
HphI GGTGA 2 cut(s) 527, 567
Hpy166II GTNNAC 2 cut(s) 575, 635
Hpy8I GTNNAC 2 cut(s) 575, 635
HpyAV CCTTC 8 cut(s) 87, 104, 359, 452, 822, 869, 1131, 1501
HpyCH4III ACNGT 5 cut(s) 86, 480, 515, 1012, 1244
HpyCH4V TGCA 9 cut(s) 195, 361, 545, 602, 803, 946, 1178, 1366, 1613
HpyF10VI GCNNNNNNNGC 2 cut(s) 809, 1591
HpyF3I CTNAG 7 cut(s) 319, 453, 855, 951, 1116, 1296, 1347
Hsp92II CATG 7 cut(s) 329, 623, 867, 1082, 1178, 1574, 1627
Kpn2I TCCGGA 1 cut(s) 176
KpnI GGTACC 1 cut(s) 468
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 7 cut(s) 179, 256, 493, 531, 904, 976, 1015
LmnI GCTCC 2 cut(s) 1117, 1498
Lsp1109I GCAGC 2 cut(s) 1132, 1513
MaeI CTAG 6 cut(s) 971, 1023, 1142, 1415, 1445, 1467
MaeIII GTNAC 3 cut(s) 561, 954, 1421
MalI GATC 7 cut(s) 181, 258, 495, 533, 906, 978, 1017
MboI GATC 7 cut(s) 179, 256, 493, 531, 904, 976, 1015
MboII GAAGA 4 cut(s) 914, 1257, 1260, 1586
MfeI CAATTG 1 cut(s) 1062
MflI RGATCY 3 cut(s) 179, 493, 1015
MhlI GDGCHC 6 cut(s) 353, 489, 684, 761, 1114, 1317
MluCI AATT 8 cut(s) 262, 448, 549, 713, 782, 814, 1062, 1577
MlyI GAGTC 1 cut(s) 1121
MmeI TCCRAC 1 cut(s) 224
MroI TCCGGA 1 cut(s) 176
MseI TTAA 8 cut(s) 53, 231, 705, 735, 848, 920, 1590, 1602
MslI CAYNNNNRTG 2 cut(s) 24, 984
MspA1I CMGCKG 1 cut(s) 1504
MspCI CTTAAG 1 cut(s) 1589
MspI CCGG 1 cut(s) 177
MssI GTTTAAAC 1 cut(s) 232
MunI CAATTG 1 cut(s) 1062
Mva1269I GAATGC 1 cut(s) 547
MvnI CGCG 1 cut(s) 909
MwoI GCNNNNNNNGC 2 cut(s) 809, 1591
NdeII GATC 7 cut(s) 179, 256, 493, 531, 904, 976, 1015
NlaIII CATG 7 cut(s) 329, 623, 867, 1082, 1178, 1574, 1627
NlaIV GGNNCC 6 cut(s) 126, 181, 441, 466, 495, 1329
NmuCI GTSAC 1 cut(s) 954
NspI RCATGY 1 cut(s) 1178
PagI TCATGA 1 cut(s) 1570
PctI GAATGC 1 cut(s) 547
PfeI GAWTC 5 cut(s) 173, 284, 1196, 1262, 1511
PflFI GACNNNGTC 1 cut(s) 128
PkrI GCNGC 2 cut(s) 1122, 1503
PleI GAGTC 1 cut(s) 1121
PmeI GTTTAAAC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 1121
PpuMI RGGWCCY 1 cut(s) 124
PsiI TTATAA 1 cut(s) 1488
Psp124BI GAGCTC 1 cut(s) 353
Psp5II RGGWCCY 1 cut(s) 124
PspN4I GGNNCC 6 cut(s) 126, 181, 441, 466, 495, 1329
PspPI GGNCC 3 cut(s) 124, 1328, 1453
PspPPI RGGWCCY 1 cut(s) 124
PstI CTGCAG 1 cut(s) 805
PsuI RGATCY 3 cut(s) 179, 493, 1015
PsyI GACNNNGTC 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 1504
RsaI GTAC 5 cut(s) 338, 466, 1209, 1352, 1566
RsaNI GTAC 5 cut(s) 337, 465, 1208, 1351, 1565
RseI CAYNNNNRTG 2 cut(s) 24, 984
SacI GAGCTC 1 cut(s) 353
SaqAI TTAA 8 cut(s) 53, 231, 705, 735, 848, 920, 1590, 1602
SatI GCNGC 2 cut(s) 1121, 1502
Sau3AI GATC 7 cut(s) 179, 256, 493, 531, 904, 976, 1015
Sau96I GGNCC 3 cut(s) 124, 1328, 1453
SbfI CCTGCAGG 1 cut(s) 805
ScaI AGTACT 1 cut(s) 338
SchI GAGTC 1 cut(s) 1121
SdaI CCTGCAGG 1 cut(s) 805
SduI GDGCHC 6 cut(s) 353, 489, 684, 761, 1114, 1317
SfcI CTRYAG 1 cut(s) 801
SinI GGWCC 3 cut(s) 124, 1328, 1453
SmiMI CAYNNNNRTG 2 cut(s) 24, 984
SmlI CTYRAG 3 cut(s) 689, 1105, 1589
SmoI CTYRAG 3 cut(s) 689, 1105, 1589
SpeI ACTAGT 2 cut(s) 970, 1022
Sse8387I CCTGCAGG 1 cut(s) 805
Sse9I AATT 8 cut(s) 262, 448, 549, 713, 782, 814, 1062, 1577
SsiI CCGC 1 cut(s) 330
SspI AATATT 3 cut(s) 169, 1484, 1557
SspMI CTAG 6 cut(s) 971, 1023, 1142, 1415, 1445, 1467
SstI GAGCTC 1 cut(s) 353
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 5 cut(s) 86, 480, 515, 1012, 1244
TaqI TCGA 1 cut(s) 1033
TasI AATT 8 cut(s) 262, 448, 549, 713, 782, 814, 1062, 1577
TatI WGTACW 2 cut(s) 336, 1350
TfiI GAWTC 5 cut(s) 173, 284, 1196, 1262, 1511
Tru1I TTAA 8 cut(s) 53, 231, 705, 735, 848, 920, 1590, 1602
Tru9I TTAA 8 cut(s) 53, 231, 705, 735, 848, 920, 1590, 1602
TscAI CASTG 3 cut(s) 489, 1017, 1249
TseFI GTSAC 1 cut(s) 954
TseI GCWGC 2 cut(s) 1120, 1501
Tsp45I GTSAC 1 cut(s) 954
TspDTI ATGAA 6 cut(s) 608, 915, 1056, 1503, 1559, 1587
TspGWI ACGGA 1 cut(s) 1466
TspRI CASTG 3 cut(s) 489, 1017, 1249
Tth111I GACNNNGTC 1 cut(s) 128
Vha464I CTTAAG 1 cut(s) 1589
VpaK11BI GGWCC 3 cut(s) 124, 1328, 1453
XapI RAATTY 4 cut(s) 448, 549, 782, 814
XceI RCATGY 1 cut(s) 1178
XcmI CCANNNNNNNNNTGG 4 cut(s) 206, 562, 1189, 1219
XspI CTAG 6 cut(s) 971, 1023, 1142, 1415, 1445, 1467
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.