Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006849

Physical Location & Seq

Genomic Coordinates Forward (+)

16940655 .. 16943177

Gene Structure 2523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2523 bp

ATGTACAATAGATTTATATGTCCAGTCTATAAACATTTCATACACAATACACCACAATGGTCCAAGTCCATACATACAAACTACAAAACCTCCCTTAATTTGGAAGGGGCATTGGCAAGCCAGTTTGCTTCAATCGTGCAAGCTTGTAGTGATCATTCTCTTCTCCAGCAAGGTAGACAAGTTCATGCACATGTCATTTGCAGCGGACTTGTCAAAAACAGCCTTGTTGGTACAAAGATCCTGGGTATGTATTTTCTCTGTGGGAGCCTTATCGTCACCAAAAACATGTTTTATCAGCTTGATTTGAAATATACTTTGCCTTGGAACTGGATGATTAGAGGGTTTACATTAACGGGTTACTTTGATTATGCCTTGCTGTTTTACTTTAAGATGTTGGATTCTGGAGTTTCACCCGACAAGTACACTTTTCCGAGTGTAATTAAAGCTTGTGGTGGTGTGAATAATGTAAGATTGGGCAAAGCAGTCTATGATACTATCCAGCTTATGGGTTTTGGAATTGATATATTTGTGGGCAGTTCTTTGATTCAACTGTATGTGGACAATGGTTGTATCCAGGATGCATGGCACTTGTTTGTTAAAATGCCTGACAAAGATTGTGTTTTATGGAATGTTATGCTTCATGGCTATGTTAAAAATGGAGAATCAAATAATTCTGTTAGAATGTTCTTGGAAATGAGAAGTAGTGAAGTTAAGCCAAATGCAGTGACATTCGCTTGCATTTTGTCTGTTTGTGCGTCAGAAGCTATGATTGGTTTTGGTACTCAACTTCATGGGCTTGTTGTCGCTTGTGGGTTGGAGTCGGATTCTCCAGTGGCTAATACATTGTTAGCAATGTATTCTAAATGCCAGTACTTCTCTGATGCCCGCAAGTTGTTTGATATGATGCCTCAAACTGATTTAGTGACATGGAATGGAATGATATCTGGTTATATACAGAGTGGGTTCATGCTTGAGGCTTCACGTTTGTTTCAGGACATGATATCTACAAGTGTCAAACCTGATGCAATCACATTTGCAAGTTTTTTACCTTCTGTTGCTGAACAAGGTAGCCTCAAGCAAGGTAAGGAAATTCACTGTTACATTGTAAGGCACTGTGTGCCTTTGGATGTGTTTTTGCAAAGTGCACTTATTGATGTATACTTCAAGTGTCGGAATGTGGAGATGGCGCGCAAAATTTTCAACCAAAGCACCAGAACAGATGTTGTCATGTGCACAGCTATGATTTCAGGGTTTGTTCTCAATGGGATGAATAGTGATGCATTGGACATTTTTAGATGGTTACTTAAACAGAAAATGAGACCAAATTCTCTAACAGTGGCAACTGTTTTACCAGCTTGTGCTGGTTTGGCTGCTCTGAAATCCGGAAAGGAAGTGCATGGTAACATCCTCAAGCATGGGTTTGATGGGAGGTGTTATGTGGGTAGTGCCCTTACAGACATGTATGCAAAATCTGGAAGACTTGATCTTGCTCATTGTGTTTTTCAAAGACTGACTGAAAGGGATGCTGTTTGTTGGAACTCAATGATAACAAGCTTTTCCCAGAATGGCAAACCAGAAGAGGCGGTTGATCTATTTCGTCAAATGGGGATGGGAGGTGTCAAATATGACTGTGTAAGCATTTCAGCTGCGCTATCTGCATGTGCAAATTTACCAGCATTTCATTACGGGAAAGAGATCCATAGTTTCATGATTAGAAATGCATTTAGCTCTGATCTGTTTGCTGAGAGTGCACTGATAGACATGTATGCCAAATGTGGAAACTTCGATCTTGCTCGCCATGTGTTTGACATGATGGAAGAGAAGAATGAAGTTTCGTGGAACAGCATTATTTCTGCTTATGGGAATCACGGTCACCTTAAGGAATCTCTTGTTCTATTTCATGAAATGTTGGGTAATGGGATCTTGGTTGATCATGTCACCTTTCTTGGTATATTATCTGCTTGTGGTCATGCAGGCGCAGTTGATGAGGGAATTCTCTACTTCCGTTCCATGATTGAGGAATATGGGATCCCAGCTAGGTTAGAGCATTATGCTTGCATGGTAGATCTGTTAGGGCGTGCTGGACATTTACATGAAGCATTTGAAACAATAAAGAGCATGCCATTCTCCCCAGATTCTGGTGTCTGGGGAACAATGCTTGGAGCATGTCGGCTCCATGGCAATGTTGAGCTTGCAGAAGAGGTATCAAGATATCTTTTTGAATTGGCACCTCTAAATTCTGGCTATTATATACTCTTATCAAATATACTTGCTGATGCTGGAAAATGGGGGAGTGTGCTTAAGGTTCGAACTCTGATGAAAAACAGAGAAATTCAAAAGGTTCCTGGGTACAGTTGGATTGAGGTGAACAACAACACTCATATGTTTGTTGCAGCAGATGGGAGTCACCCAGAGTCTGCTCAGATATATTCATTGCTCAACGGTCTTCTTCTAGAACTAAGAAAAGAGGGTTATAATCCAAGGCCTTACCTTCCAATGCATCCACAAACGTTGGGGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

841

Amino Acids

93.61

Weight (kDa)

6.74

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	205 - 252	3.6e-10	PPR repeat family
PPR_2	PF13041	306 - 348	6.7e-09	PPR repeat family
PPR	PF01535	308 - 335	2.2e-06	PPR repeat
PPR_2	PF13041	407 - 454	2.3e-06	PPR repeat family
PPR_2	PF13041	508 - 556	2.1e-09	PPR repeat family
PPR	PF01535	510 - 537	4.3e-08	PPR repeat
PPR_2	PF13041	609 - 656	1.6e-09	PPR repeat family
PPR	PF01535	611 - 641	1.7e-07	PPR repeat
E_motif	PF20431	726 - 788	2.3e-18	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21300
fragaria_vesca	FvH4_2g11440 FvH4_2g11440 FvH4_2g11440 FvH4_2g11440 FvH4_2g11440
malus_domestica	MD09G1249500.v1.1 MD17G1242300.v1.1
prunus_persica	Prupe.3G135500_v2.0.a1
pyrus_communis	pycom09g16630 pycom17g24490 pycom17g24500
rosa_chinensis	RchiOBHm_Chr7g0222301
rosa_laevigata	RLG00000002074
rosa_multiflora	Rmu_sc0007069.1_g000017
rosa_roxburghii	Rroxscaffold_3G00237140
rosa_rugosa	Rorug07G0207300 Rorug07G0207300 Rorug07G0207300 Rorug07G0207400 Rorug07G0207500
rosa_samantha	Rh7AG349000 Rh7BG339300 Rh7CG366400 Rh7DG345900
rosa_wichuraiana	Rw7G029520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2475
AccB1I	GGYRCC	1 cut(s)	2227
AccB7I	CCANNNNNTGG	2 cut(s)	505, 2138
AccI	GTMKAC	2 cut(s)	175, 1158
AccII	CGCG	1 cut(s)	1189
AccIII	TCCGGA	1 cut(s)	1382
AciI	CCGC	3 cut(s)	204, 886, 1583
AclI	AACGTT	1 cut(s)	2510
AclWI	GGATC	5 cut(s)	232, 1690, 1928, 2023, 2036
AcsI	RAATTY	7 cut(s)	1089, 1194, 1324, 1666, 1992, 2236, 2331
AdeI	CACNNNGTG	1 cut(s)	1117
AfaI	GTAC	6 cut(s)	5, 232, 422, 781, 872, 2351
AfiI	CCNNNNNNNGG	3 cut(s)	100, 505, 2138
AflII	CTTAAG	2 cut(s)	1877, 2300
AflIII	ACRYGT	4 cut(s)	190, 285, 1458, 1761
AgsI	TTSAA	9 cut(s)	132, 307, 548, 1165, 1201, 1505, 2105, 2222, 2336
AjnI	CCWGG	3 cut(s)	240, 573, 2344
AjuI	GAANNNNNNNTTGG	2 cut(s)	753, 785
Alw21I	GWGCWC	3 cut(s)	1147, 1235, 1753
Alw26I	GTCTC	1 cut(s)	1312
Alw44I	GTGCAC	3 cut(s)	1143, 1231, 1749
AlwI	GGATC	5 cut(s)	232, 1690, 1928, 2023, 2036
AlwNI	CAGNNNCTG	2 cut(s)	2138, 2417
Aor13HI	TCCGGA	1 cut(s)	1382
AoxI	GGCC	1 cut(s)	2483
ApaLI	GTGCAC	3 cut(s)	1143, 1231, 1749
ApeKI	GCWGC	4 cut(s)	201, 1370, 1646, 2393
ApoI	RAATTY	7 cut(s)	1089, 1194, 1324, 1666, 1992, 2236, 2331
AspLEI	GCGC	4 cut(s)	1189, 1191, 1651, 1979
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	6 cut(s)	268, 402, 1865, 1930, 2377, 2399
AsuII	TTCGAA	1 cut(s)	2308
AvaII	GGWCC	1 cut(s)	60
BaeGI	GKGCMC	4 cut(s)	1147, 1235, 1450, 1753
BamHI	GGATCC	1 cut(s)	2028
BanI	GGYRCC	1 cut(s)	2227
BbsI	GAAGAC	2 cut(s)	1483, 2438
Bbv12I	GWGCWC	3 cut(s)	1147, 1235, 1753
BbvI	GCAGC	4 cut(s)	213, 1357, 1633, 2405
BccI	CCATC	6 cut(s)	1177, 1290, 1418, 1603, 1807, 2393
BciT130I	CCWGG	3 cut(s)	242, 575, 2346
BciVI	GTATCC	1 cut(s)	581
BclI	TGATCA	2 cut(s)	151, 1930
BcoDI	GTCTC	1 cut(s)	1312
BfaI	CTAG	2 cut(s)	2037, 2453
BfrI	CTTAAG	2 cut(s)	1877, 2300
BfuI	GTATCC	1 cut(s)	581
BglII	AGATCT	1 cut(s)	2065
BisI	GCNGC	4 cut(s)	202, 1371, 1647, 2394
BlsI	GCNGC	4 cut(s)	203, 1372, 1648, 2395
BmcAI	AGTACT	1 cut(s)	872
Bme1390I	CCNGG	3 cut(s)	242, 575, 2346
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	5 cut(s)	266, 2030, 2174, 2229, 2343
BmrFI	CCNGG	3 cut(s)	242, 575, 2346
BmsI	GCATC	8 cut(s)	568, 871, 894, 1012, 1267, 1513, 2266, 2509
BpiI	GAAGAC	2 cut(s)	1483, 2438
BpmI	CTGGAG	3 cut(s)	149, 423, 813
Bpu14I	TTCGAA	1 cut(s)	2308
BpuEI	CTTGAG	3 cut(s)	992, 1058, 1394
BsaI	GGTCTC	1 cut(s)	1312
BsaJI	CCNNGG	5 cut(s)	241, 320, 2176, 2345, 2480
BsaWI	WCCGGW	1 cut(s)	1382
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 505, 2138
Bse1I	ACTGG	5 cut(s)	23, 121, 332, 830, 868
Bse3DI	GCAATG	3 cut(s)	858, 2188, 2432
BseAI	TCCGGA	1 cut(s)	1382
BseBI	CCWGG	3 cut(s)	242, 575, 2346
BseDI	CCNNGG	5 cut(s)	241, 320, 2176, 2345, 2480
BseGI	GGATG	8 cut(s)	336, 583, 1132, 1272, 1404, 1528, 1614, 2500
BseLI	CCNNNNNNNGG	3 cut(s)	100, 505, 2138
BseMI	GCAATG	3 cut(s)	858, 2188, 2432
BseMII	CTCAG	2 cut(s)	1734, 2435
BseNI	ACTGG	5 cut(s)	23, 121, 332, 830, 868
BsePI	GCGCGC	1 cut(s)	1187
BseSI	GKGCMC	4 cut(s)	1147, 1235, 1450, 1753
BseXI	GCAGC	4 cut(s)	213, 1357, 1633, 2405
BseYI	CCCAGC	1 cut(s)	2032
Bsh1236I	CGCG	1 cut(s)	1189
BshFI	GGCC	1 cut(s)	2485
BshNI	GGYRCC	1 cut(s)	2227
BsiHKAI	GWGCWC	3 cut(s)	1147, 1235, 1753
BsiSI	CCGG	1 cut(s)	1383
BslI	CCNNNNNNNGG	3 cut(s)	100, 505, 2138
BsmAI	GTCTC	1 cut(s)	1312
BsnI	GGCC	1 cut(s)	2485
Bso31I	GGTCTC	1 cut(s)	1312
Bsp119I	TTCGAA	1 cut(s)	2308
Bsp1286I	GDGCHC	4 cut(s)	1147, 1235, 1450, 1753
Bsp13I	TCCGGA	1 cut(s)	1382
Bsp1407I	TGTACA	1 cut(s)	3
Bsp19I	CCATGG	1 cut(s)	2176
BspACI	CCGC	3 cut(s)	204, 886, 1583
BspANI	GGCC	1 cut(s)	2485
BspCNI	CTCAG	2 cut(s)	1735, 2434
BspEI	TCCGGA	1 cut(s)	1382
BspFNI	CGCG	1 cut(s)	1189
BspHI	TCATGA	2 cut(s)	1707, 1900
BspLI	GGNNCC	5 cut(s)	266, 2030, 2174, 2229, 2343
BspPI	GGATC	5 cut(s)	232, 1690, 1928, 2023, 2036
BspT104I	TTCGAA	1 cut(s)	2308
BspT107I	GGYRCC	1 cut(s)	2227
BspTI	CTTAAG	2 cut(s)	1877, 2300
BspTNI	GGTCTC	1 cut(s)	1312
BsrDI	GCAATG	3 cut(s)	858, 2188, 2432
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	5 cut(s)	23, 121, 332, 830, 868
BssECI	CCNNGG	5 cut(s)	241, 320, 2176, 2345, 2480
BssHII	GCGCGC	1 cut(s)	1187
BssNAI	GTATAC	1 cut(s)	1159
BssT1I	CCWWGG	3 cut(s)	320, 2176, 2480
Bst1107I	GTATAC	1 cut(s)	1159
Bst2UI	CCWGG	3 cut(s)	242, 575, 2346
Bst4CI	ACNGT	9 cut(s)	552, 1097, 1115, 1336, 1345, 1631, 1871, 2354, 2444
Bst6I	CTCTTC	4 cut(s)	165, 1572, 1812, 2193
BstAFI	CTTAAG	2 cut(s)	1877, 2300
BstAPI	GCANNNNNTGC	1 cut(s)	1117
BstAUI	TGTACA	1 cut(s)	3
BstBI	TTCGAA	1 cut(s)	2308
BstDEI	CTNAG	3 cut(s)	1743, 2421, 2459
BstDSI	CCRYGG	1 cut(s)	2176
BstEII	GGTNACC	1 cut(s)	1871
BstF5I	GGATG	8 cut(s)	336, 583, 1132, 1272, 1404, 1528, 1614, 2500
BstFNI	CGCG	1 cut(s)	1189
BstHHI	GCGC	4 cut(s)	1189, 1191, 1651, 1979
BstMAI	GTCTC	1 cut(s)	1312
BstMWI	GCNNNNNNNGC	5 cut(s)	761, 1117, 1367, 1655, 1748
BstNI	CCWGG	3 cut(s)	242, 575, 2346
BstNSI	RCATGY	7 cut(s)	194, 289, 1462, 1662, 1765, 2122, 2169
BstPI	GGTNACC	1 cut(s)	1871
BstSCI	CCNGG	3 cut(s)	240, 573, 2344
BstSLI	GKGCMC	4 cut(s)	1147, 1235, 1450, 1753
BstUI	CGCG	1 cut(s)	1189
BstV1I	GCAGC	4 cut(s)	213, 1357, 1633, 2405
BstV2I	GAAGAC	2 cut(s)	1483, 2438
BstX2I	RGATCY	5 cut(s)	237, 1695, 1920, 2028, 2065
BstYI	RGATCY	5 cut(s)	237, 1695, 1920, 2028, 2065
BstZ17I	GTATAC	1 cut(s)	1159
BsuI	GTATCC	1 cut(s)	581
BsuRI	GGCC	1 cut(s)	2485
BtgI	CCRYGG	1 cut(s)	2176
BtsCI	GGATG	8 cut(s)	336, 583, 1132, 1272, 1404, 1528, 1614, 2500
BtsI	GCAGTG	1 cut(s)	729
BtsIMutI	CAGTG	6 cut(s)	729, 837, 1093, 1111, 1341, 1751
CaiI	CAGNNNCTG	2 cut(s)	2138, 2417
CciI	TCATGA	2 cut(s)	1707, 1900
CfoI	GCGC	4 cut(s)	1189, 1191, 1651, 1979
Cfr13I	GGNCC	1 cut(s)	60
CseI	GACGC	1 cut(s)	744
Csp6I	GTAC	6 cut(s)	4, 231, 421, 780, 871, 2350
CspCI	CAANNNNNGTGG	1 cut(s)	2493
CviQI	GTAC	6 cut(s)	4, 231, 421, 780, 871, 2350
DdeI	CTNAG	3 cut(s)	1743, 2421, 2459
DraIII	CACNNNGTG	1 cut(s)	1117
Eam1104I	CTCTTC	4 cut(s)	165, 1572, 1812, 2193
EarI	CTCTTC	4 cut(s)	165, 1572, 1812, 2193
Eco130I	CCWWGG	3 cut(s)	320, 2176, 2480
Eco147I	AGGCCT	1 cut(s)	2485
Eco31I	GGTCTC	1 cut(s)	1312
Eco32I	GATATC	3 cut(s)	942, 1002, 2213
Eco47I	GGWCC	1 cut(s)	60
Eco91I	GGTNACC	1 cut(s)	1871
EcoO65I	GGTNACC	1 cut(s)	1871
EcoRI	GAATTC	1 cut(s)	1992
EcoRII	CCWGG	3 cut(s)	240, 573, 2344
EcoRV	GATATC	3 cut(s)	942, 1002, 2213
EcoT14I	CCWWGG	3 cut(s)	320, 2176, 2480
EcoT22I	ATGCAT	4 cut(s)	583, 1282, 1723, 2502
ErhI	CCWWGG	3 cut(s)	320, 2176, 2480
FauI	CCCGC	1 cut(s)	893
FauNDI	CATATG	1 cut(s)	2382
FbaI	TGATCA	2 cut(s)	151, 1930
FblI	GTMKAC	2 cut(s)	175, 1158
Fnu4HI	GCNGC	4 cut(s)	202, 1371, 1647, 2394
FokI	GGATG	8 cut(s)	343, 590, 1139, 1279, 1391, 1535, 1621, 2487
Fsp4HI	GCNGC	4 cut(s)	202, 1371, 1647, 2394
FspBI	CTAG	2 cut(s)	2037, 2453
GlaI	GCGC	4 cut(s)	1188, 1190, 1650, 1978
GluI	GCNGC	4 cut(s)	202, 1371, 1647, 2394
GsaI	CCCAGC	1 cut(s)	2036
GsuI	CTGGAG	3 cut(s)	149, 423, 813
HaeIII	GGCC	1 cut(s)	2485
HapII	CCGG	1 cut(s)	1383
HgaI	GACGC	1 cut(s)	744
HhaI	GCGC	4 cut(s)	1189, 1191, 1651, 1979
Hin6I	GCGC	4 cut(s)	1187, 1189, 1649, 1977
HinP1I	GCGC	4 cut(s)	1187, 1189, 1649, 1977
HindIII	AAGCTT	3 cut(s)	141, 444, 1552
HpaII	CCGG	1 cut(s)	1383
HphI	GGTGA	6 cut(s)	268, 402, 1865, 1930, 2377, 2399
Hpy166II	GTNNAC	9 cut(s)	176, 345, 423, 559, 1145, 1159, 1233, 1751, 2368
Hpy188I	TCNGA	9 cut(s)	432, 760, 823, 880, 1173, 1377, 1732, 2316, 2424
Hpy188III	TCNNGA	8 cut(s)	402, 992, 1383, 1473, 1708, 1901, 2208, 2453
Hpy8I	GTNNAC	9 cut(s)	176, 345, 423, 559, 1145, 1159, 1233, 1751, 2368
HpyAV	CCTTC	3 cut(s)	98, 1059, 2501
HpyCH4III	ACNGT	9 cut(s)	552, 1097, 1115, 1336, 1345, 1631, 1871, 2354, 2444
HpyCH4IV	ACGT	2 cut(s)	982, 2510
HpyF10VI	GCNNNNNNNGC	5 cut(s)	761, 1117, 1367, 1655, 1748
HpyF3I	CTNAG	3 cut(s)	1743, 2421, 2459
HpySE526I	ACGT	2 cut(s)	982, 2510
HspAI	GCGC	4 cut(s)	1187, 1189, 1649, 1977
Kpn2I	TCCGGA	1 cut(s)	1382
Ksp22I	TGATCA	2 cut(s)	151, 1930
LmnI	GCTCC	3 cut(s)	264, 2162, 2178
Lsp1109I	GCAGC	4 cut(s)	213, 1357, 1633, 2405
LweI	GCATC	8 cut(s)	568, 871, 894, 1012, 1267, 1513, 2266, 2509
MaeI	CTAG	2 cut(s)	2037, 2453
MaeII	ACGT	2 cut(s)	982, 2510
MboII	GAAGA	8 cut(s)	152, 1488, 1589, 1829, 1834, 2210, 2438, 2441
MflI	RGATCY	5 cut(s)	237, 1695, 1920, 2028, 2065
MhlI	GDGCHC	4 cut(s)	1147, 1235, 1450, 1753
MlyI	GAGTC	3 cut(s)	827, 2413, 2423
MmeI	TCCRAC	6 cut(s)	375, 795, 801, 1151, 1514, 2336
Mph1103I	ATGCAT	4 cut(s)	583, 1282, 1723, 2502
MroI	TCCGGA	1 cut(s)	1382
MslI	CAYNNNNRTG	7 cut(s)	55, 189, 645, 1238, 2091, 2181, 2381
MspA1I	CMGCKG	2 cut(s)	204, 1646
MspCI	CTTAAG	2 cut(s)	1877, 2300
MspI	CCGG	1 cut(s)	1383
MspR9I	CCNGG	3 cut(s)	242, 575, 2346
MvaI	CCWGG	3 cut(s)	242, 575, 2346
MvnI	CGCG	1 cut(s)	1189
MwoI	GCNNNNNNNGC	5 cut(s)	761, 1117, 1367, 1655, 1748
NcoI	CCATGG	1 cut(s)	2176
NdeI	CATATG	1 cut(s)	2382
NlaIV	GGNNCC	5 cut(s)	266, 2030, 2174, 2229, 2343
NmuCI	GTSAC	6 cut(s)	274, 724, 922, 1871, 1936, 2405
NsiI	ATGCAT	4 cut(s)	583, 1282, 1723, 2502
NspI	RCATGY	7 cut(s)	194, 289, 1462, 1662, 1765, 2122, 2169
NspV	TTCGAA	1 cut(s)	2308
PaeI	GCATGC	1 cut(s)	2122
PagI	TCATGA	2 cut(s)	1707, 1900
PauI	GCGCGC	1 cut(s)	1187
PceI	AGGCCT	1 cut(s)	2485
PciI	ACATGT	4 cut(s)	190, 285, 1458, 1761
PfeI	GAWTC	7 cut(s)	398, 544, 662, 824, 1864, 1883, 2135
PflMI	CCANNNNNTGG	2 cut(s)	505, 2138
PfoI	TCCNGGA	1 cut(s)	573
PkrI	GCNGC	4 cut(s)	203, 1372, 1648, 2395
PleI	GAGTC	3 cut(s)	826, 2412, 2422
PpsI	GAGTC	3 cut(s)	826, 2412, 2422
PscI	ACATGT	4 cut(s)	190, 285, 1458, 1761
PsiI	TTATAA	1 cut(s)	2475
Psp1406I	AACGTT	1 cut(s)	2510
Psp6I	CCWGG	3 cut(s)	240, 573, 2344
PspEI	GGTNACC	1 cut(s)	1871
PspFI	CCCAGC	1 cut(s)	2032
PspGI	CCWGG	3 cut(s)	240, 573, 2344
PspN4I	GGNNCC	5 cut(s)	266, 2030, 2174, 2229, 2343
PspPI	GGNCC	1 cut(s)	60
PstNI	CAGNNNCTG	2 cut(s)	2138, 2417
PsuI	RGATCY	5 cut(s)	237, 1695, 1920, 2028, 2065
PteI	GCGCGC	1 cut(s)	1187
PvuII	CAGCTG	1 cut(s)	1646
RsaI	GTAC	6 cut(s)	5, 232, 422, 781, 872, 2351
RsaNI	GTAC	6 cut(s)	4, 231, 421, 780, 871, 2350
RseI	CAYNNNNRTG	7 cut(s)	55, 189, 645, 1238, 2091, 2181, 2381
SatI	GCNGC	4 cut(s)	202, 1371, 1647, 2394
Sau96I	GGNCC	1 cut(s)	60
ScaI	AGTACT	1 cut(s)	872
SchI	GAGTC	3 cut(s)	827, 2413, 2423
ScrFI	CCNGG	3 cut(s)	242, 575, 2346
SduI	GDGCHC	4 cut(s)	1147, 1235, 1450, 1753
SfaNI	GCATC	8 cut(s)	568, 871, 894, 1012, 1267, 1513, 2266, 2509
SfuI	TTCGAA	1 cut(s)	2308
SinI	GGWCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	7 cut(s)	55, 189, 645, 1238, 2091, 2181, 2381
SmlI	CTYRAG	5 cut(s)	971, 1073, 1409, 1877, 2300
SmoI	CTYRAG	5 cut(s)	971, 1073, 1409, 1877, 2300
SphI	GCATGC	1 cut(s)	2122
SseBI	AGGCCT	1 cut(s)	2485
SsiI	CCGC	3 cut(s)	204, 886, 1583
SspMI	CTAG	2 cut(s)	2037, 2453
StuI	AGGCCT	1 cut(s)	2485
StyD4I	CCNGG	3 cut(s)	240, 573, 2344
StyI	CCWWGG	3 cut(s)	320, 2176, 2480
TaaI	ACNGT	9 cut(s)	552, 1097, 1115, 1336, 1345, 1631, 1871, 2354, 2444
TaiI	ACGT	2 cut(s)	985, 2513
TaqI	TCGA	2 cut(s)	1785, 2308
TatI	WGTACW	3 cut(s)	3, 420, 870
TfiI	GAWTC	7 cut(s)	398, 544, 662, 824, 1864, 1883, 2135
TscAI	CASTG	6 cut(s)	729, 837, 1100, 1118, 1341, 1758
TseFI	GTSAC	6 cut(s)	274, 724, 922, 1871, 1936, 2405
TseI	GCWGC	4 cut(s)	201, 1370, 1646, 2393
Tsp45I	GTSAC	6 cut(s)	274, 724, 922, 1871, 1936, 2405
TspGWI	ACGGA	1 cut(s)	1994
TspRI	CASTG	6 cut(s)	729, 837, 1100, 1118, 1341, 1758
Van91I	CCANNNNNTGG	2 cut(s)	505, 2138
Vha464I	CTTAAG	2 cut(s)	1877, 2300
VneI	GTGCAC	3 cut(s)	1143, 1231, 1749
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	7 cut(s)	1089, 1194, 1324, 1666, 1992, 2236, 2331
XbaI	TCTAGA	1 cut(s)	2452
XceI	RCATGY	7 cut(s)	194, 289, 1462, 1662, 1765, 2122, 2169
XmiI	GTMKAC	2 cut(s)	175, 1158
XspI	CTAG	2 cut(s)	2037, 2453
ZrmI	AGTACT	1 cut(s)	872
Zsp2I	ATGCAT	4 cut(s)	583, 1282, 1723, 2502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.