Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006849

Physical Location & Seq

Genomic Coordinates Reverse (-)

18264957 .. 18266292

Gene Structure 1336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0207500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGCATCTCTTCATCTTCTTCATCCTTTTCGGTTCCATCTTTCTTGATACAATGGCCTCCAATGGAAACCACACAACATTGCAAGAAGGTCAGAGTCCACTACAGCTGCCTAAAGCAGAACAAAGGGACTGTCATTACAAACCTGGGGAAGAATATGGAACAGTTCTTTTCACATCGACGGATCGCAATTTCATCGAGTTTGATGAAGGATGGGAGTTTCTGCAGAAGGGGATCACAAAGATGAAGAGGATCGTAGAAGGGATGCCAGAAACTCAGTTCAGCTCAGATGATTATATGAAGCTCTACACGACTGTTTACAAATTGTGTACTCAGGATCCCCTTAATGATTACTCTCAACAGCTTTATGACAAATATCGGGAGACGTTTGAGGTTTACATTACTTCAACGGTGCTTCCTTCTCTACGAGAGAAGCCTGAAGAGTCGATGCTGCAAGAACTTGTCAAAAGATGGACAAATCATAAAGTTATGGCAAGGTGGCTGTCACGCTTCTTTCATTTTCTCGATCGCTACTTCATCGCGAGGAGGTCGCTTCCCTCTCTAAATGAAGTTGCCCTTATCTCCTTCCGTGATTTGGTTTATCATGAGGTGAATGCTAATGCCAGAGTTGCTGTGATTGATCTCATCTGCAAAGAACGTGAAGGAGAGCAGATTGACAGAGAGCTAGTGAAGAATGTGGTAGACATGTTTGTTGAAATCGGAAATGGGAAAATGGATGCTTACGAAAAGGACTTGGAAGCTCACATGCTGGAAAACACTGGCGATTACTATTCTCTCAAAGCGTCGAGTTGGATTCTAGAGTATTCTTCTCCAGATTACATGTTGAAGGTCGATGAATGCTTGAGAATGGAGAGGGAGAGAGTTTCGCATTACCTGCATTCAAGCAGTGAGCAGAAGCTGGTGAACAAAGTTAAAGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

313

Amino Acids

36.94

Weight (kDa)

5.32

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin	PF00888	71 - 311	6.9e-53	Cullin alpha solenoid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21300
fragaria_vesca	FvH4_2g11440 FvH4_2g11440 FvH4_2g11440 FvH4_2g11440 FvH4_2g11440
malus_domestica	MD09G1249500.v1.1 MD17G1242300.v1.1
prunus_persica	Prupe.3G135500_v2.0.a1
pyrus_communis	pycom09g16630 pycom17g24490 pycom17g24500
rosa_chinensis	RchiOBHm_Chr7g0222301
rosa_laevigata	RLG00000002074
rosa_multiflora	Rmu_sc0007069.1_g000017
rosa_roxburghii	Rroxscaffold_3G00237140
rosa_rugosa	Rorug07G0207300 Rorug07G0207300 Rorug07G0207300 Rorug07G0207400 Rorug07G0207500
rosa_samantha	Rh7AG349000 Rh7BG339300 Rh7CG366400 Rh7DG345900
rosa_wichuraiana	Rw7G029520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	900
AccI	GTMKAC	1 cut(s)	699
AccII	CGCG	1 cut(s)	539
AclWI	GGATC	5 cut(s)	189, 239, 257, 329, 342
AcuI	CTGAAG	1 cut(s)	456
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	1 cut(s)	592
AflIII	ACRYGT	2 cut(s)	702, 837
AgsI	TTSAA	4 cut(s)	405, 713, 844, 900
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	7 cut(s)	106, 282, 301, 361, 682, 758, 916
AluI	AGCT	7 cut(s)	106, 282, 301, 361, 682, 758, 916
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	5 cut(s)	189, 239, 257, 329, 342
AlwNI	CAGNNNCTG	1 cut(s)	916
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	2 cut(s)	106, 448
ArsI	GACNNNNNNTTYG	2 cut(s)	115, 147
AsuHPI	GGTGA	2 cut(s)	619, 931
BamHI	GGATCC	1 cut(s)	334
BbvI	GCAGC	2 cut(s)	93, 435
BccI	CCATC	3 cut(s)	44, 204, 462
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	374
BfaI	CTAG	2 cut(s)	683, 815
BfmI	CTRYAG	2 cut(s)	101, 221
BfuAI	ACCTGC	1 cut(s)	900
BisI	GCNGC	2 cut(s)	107, 449
BlsI	GCNGC	2 cut(s)	108, 450
Bme1390I	CCNGG	1 cut(s)	144
BmiI	GGNNCC	2 cut(s)	34, 336
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	5 cut(s)	13, 252, 435, 724, 925
BpmI	CTGGAG	1 cut(s)	813
BpuEI	CTTGAG	1 cut(s)	880
BsaJI	CCNNGG	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	592
Bse1I	ACTGG	1 cut(s)	781
Bse3DI	GCAATG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	4 cut(s)	21, 215, 267, 739
BseLI	CCNNNNNNNGG	1 cut(s)	592
BseMI	GCAATG	1 cut(s)	77
BseMII	CTCAG	3 cut(s)	287, 297, 344
BseNI	ACTGG	1 cut(s)	781
BseRI	GAGGAG	1 cut(s)	556
BseXI	GCAGC	2 cut(s)	93, 435
Bsh1236I	CGCG	1 cut(s)	539
Bsh1285I	CGRYCG	1 cut(s)	526
BshFI	GGCC	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	526
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	592
BsmAI	GTCTC	1 cut(s)	374
BsmBI	CGTCTC	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	140
BsmI	GAATGC	3 cut(s)	616, 860, 895
BsnI	GGCC	1 cut(s)	56
Bsp143I	GATC	6 cut(s)	181, 231, 249, 334, 523, 637
Bsp68I	TCGCGA	1 cut(s)	539
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	3 cut(s)	286, 296, 343
BspFNI	CGCG	1 cut(s)	539
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	2 cut(s)	34, 336
BspMAI	CTGCAG	1 cut(s)	225
BspMI	ACCTGC	1 cut(s)	900
BspPI	GGATC	5 cut(s)	189, 239, 257, 329, 342
BsrDI	GCAATG	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	781
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	6 cut(s)	181, 231, 249, 334, 523, 637
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	4 cut(s)	131, 163, 313, 409
Bst6I	CTCTTC	3 cut(s)	14, 239, 432
BstAPI	GCANNNNNTGC	1 cut(s)	892
BstDEI	CTNAG	3 cut(s)	273, 283, 330
BstF5I	GGATG	4 cut(s)	21, 215, 267, 739
BstFNI	CGCG	1 cut(s)	539
BstKTI	GATC	6 cut(s)	184, 234, 252, 337, 526, 640
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	6 cut(s)	181, 231, 249, 334, 523, 637
BstMCI	CGRYCG	1 cut(s)	526
BstMWI	GCNNNNNNNGC	2 cut(s)	626, 892
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	3 cut(s)	706, 766, 841
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	2 cut(s)	101, 221
BstUI	CGCG	1 cut(s)	539
BstV1I	GCAGC	2 cut(s)	93, 435
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	56
BtgZI	GCGATG	1 cut(s)	520
BtsCI	GGATG	4 cut(s)	21, 215, 267, 739
BtsI	GCAGTG	1 cut(s)	910
BtsIMutI	CAGTG	2 cut(s)	774, 910
BtuMI	TCGCGA	1 cut(s)	539
BveI	ACCTGC	1 cut(s)	900
CaiI	CAGNNNCTG	1 cut(s)	916
CciI	TCATGA	1 cut(s)	601
CseI	GACGC	1 cut(s)	789
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	5 cut(s)	602, 703, 763, 838, 939
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	3 cut(s)	273, 283, 330
DpnI	GATC	6 cut(s)	183, 233, 251, 336, 525, 639
DpnII	GATC	6 cut(s)	181, 231, 249, 334, 523, 637
Eam1104I	CTCTTC	3 cut(s)	14, 239, 432
EarI	CTCTTC	3 cut(s)	14, 239, 432
Eco57I	CTGAAG	1 cut(s)	456
EcoRII	CCWGG	1 cut(s)	142
EcoT22I	ATGCAT	2 cut(s)	6, 940
Esp3I	CGTCTC	1 cut(s)	374
FaeI	CATG	5 cut(s)	605, 706, 766, 841, 942
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	5 cut(s)	601, 702, 762, 837, 938
FblI	GTMKAC	1 cut(s)	699
Fnu4HI	GCNGC	2 cut(s)	107, 449
FokI	GGATG	4 cut(s)	8, 222, 274, 746
Fsp4HI	GCNGC	2 cut(s)	107, 449
FspBI	CTAG	2 cut(s)	683, 815
GluI	GCNGC	2 cut(s)	107, 449
GsuI	CTGGAG	1 cut(s)	813
HaeIII	GGCC	1 cut(s)	56
HgaI	GACGC	1 cut(s)	789
Hin1II	CATG	5 cut(s)	605, 706, 766, 841, 942
HinfI	GANTC	3 cut(s)	94, 440, 811
HphI	GGTGA	2 cut(s)	619, 931
Hpy166II	GTNNAC	6 cut(s)	98, 316, 327, 394, 700, 922
Hpy188I	TCNGA	3 cut(s)	93, 286, 719
Hpy188III	TCNNGA	8 cut(s)	44, 332, 377, 521, 538, 602, 815, 830
Hpy8I	GTNNAC	6 cut(s)	98, 316, 327, 394, 700, 922
Hpy99I	CGWCG	2 cut(s)	181, 805
HpyAV	CCTTC	8 cut(s)	80, 200, 220, 251, 426, 592, 653, 838
HpyCH4III	ACNGT	4 cut(s)	131, 163, 313, 409
HpyCH4IV	ACGT	2 cut(s)	383, 655
HpyCH4V	TGCA	7 cut(s)	4, 82, 223, 451, 648, 895, 938
HpyF10VI	GCNNNNNNNGC	2 cut(s)	626, 892
HpyF3I	CTNAG	3 cut(s)	273, 283, 330
HpySE526I	ACGT	2 cut(s)	383, 655
Hsp92II	CATG	5 cut(s)	605, 706, 766, 841, 942
Kzo9I	GATC	6 cut(s)	181, 231, 249, 334, 523, 637
Lsp1109I	GCAGC	2 cut(s)	93, 435
LweI	GCATC	5 cut(s)	13, 252, 435, 724, 925
MaeI	CTAG	2 cut(s)	683, 815
MaeII	ACGT	2 cut(s)	383, 655
MaeIII	GTNAC	1 cut(s)	501
MalI	GATC	6 cut(s)	183, 233, 251, 336, 525, 639
MboI	GATC	6 cut(s)	181, 231, 249, 334, 523, 637
MboII	GAAGA	7 cut(s)	7, 10, 161, 256, 449, 700, 816
MflI	RGATCY	1 cut(s)	334
MluCI	AATT	2 cut(s)	187, 320
MlyI	GAGTC	2 cut(s)	103, 449
MmeI	TCCRAC	1 cut(s)	788
MnlI	CCTC	8 cut(s)	67, 240, 382, 534, 537, 565, 598, 864
Mph1103I	ATGCAT	2 cut(s)	6, 940
MseI	TTAA	2 cut(s)	342, 930
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	144
Mva1269I	GAATGC	3 cut(s)	616, 860, 895
MvaI	CCWGG	1 cut(s)	144
MvnI	CGCG	1 cut(s)	539
MwoI	GCNNNNNNNGC	2 cut(s)	626, 892
NdeII	GATC	6 cut(s)	181, 231, 249, 334, 523, 637
NlaIII	CATG	5 cut(s)	605, 706, 766, 841, 942
NlaIV	GGNNCC	2 cut(s)	34, 336
NmuCI	GTSAC	1 cut(s)	501
NruI	TCGCGA	1 cut(s)	539
NsiI	ATGCAT	2 cut(s)	6, 940
NspI	RCATGY	3 cut(s)	706, 766, 841
PagI	TCATGA	1 cut(s)	601
PciI	ACATGT	2 cut(s)	702, 837
PctI	GAATGC	3 cut(s)	616, 860, 895
PfeI	GAWTC	1 cut(s)	811
PkrI	GCNGC	2 cut(s)	108, 450
Ple19I	CGATCG	1 cut(s)	526
PleI	GAGTC	2 cut(s)	102, 448
PpsI	GAGTC	2 cut(s)	102, 448
PscI	ACATGT	2 cut(s)	702, 837
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	34, 336
PstI	CTGCAG	1 cut(s)	225
PstNI	CAGNNNCTG	1 cut(s)	916
PsuI	RGATCY	1 cut(s)	334
PvuI	CGATCG	1 cut(s)	526
PvuII	CAGCTG	1 cut(s)	106
RruI	TCGCGA	1 cut(s)	539
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	342, 930
SatI	GCNGC	2 cut(s)	107, 449
Sau3AI	GATC	6 cut(s)	181, 231, 249, 334, 523, 637
SchI	GAGTC	2 cut(s)	103, 449
ScrFI	CCNGG	1 cut(s)	144
SfaNI	GCATC	5 cut(s)	13, 252, 435, 724, 925
SfcI	CTRYAG	2 cut(s)	101, 221
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	859
SmoI	CTYRAG	1 cut(s)	859
Sse9I	AATT	2 cut(s)	187, 320
SspMI	CTAG	2 cut(s)	683, 815
StyD4I	CCNGG	1 cut(s)	142
TaaI	ACNGT	4 cut(s)	131, 163, 313, 409
TaiI	ACGT	2 cut(s)	386, 658
TaqI	TCGA	6 cut(s)	176, 195, 443, 522, 803, 849
TasI	AATT	2 cut(s)	187, 320
TatI	WGTACW	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	811
Tru1I	TTAA	2 cut(s)	342, 930
Tru9I	TTAA	2 cut(s)	342, 930
TscAI	CASTG	2 cut(s)	781, 910
TseFI	GTSAC	1 cut(s)	501
TseI	GCWGC	2 cut(s)	106, 448
Tsp45I	GTSAC	1 cut(s)	501
TspDTI	ATGAA	9 cut(s)	10, 181, 219, 257, 311, 503, 523, 579, 867
TspGWI	ACGGA	2 cut(s)	194, 575
TspRI	CASTG	2 cut(s)	781, 910
XbaI	TCTAGA	1 cut(s)	814
XceI	RCATGY	3 cut(s)	706, 766, 841
XmiI	GTMKAC	1 cut(s)	699
XspI	CTAG	2 cut(s)	683, 815
Zsp2I	ATGCAT	2 cut(s)	6, 940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.