Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006849

Physical Location & Seq

Genomic Coordinates Forward (+)

22803182 .. 22803487

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g24490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTACAATAGAATTATATGTCCCGTCTATAAATGTTTCATACACATTACACCACAGTGGTCCAAGTCCATACATACAAACTACAAAAACTCCCTTAATTTGGAAGGGGCATTGGCAAGCCAGTTTGCTTCTATCTTGCAAGCTTGCAGTGATCAGTCTCTTATGCAACAAGGTAGACAAGTTCATGCACATGTTATTTGCAGCGGACTAGTCAAAAACAGCCTCGTCGGTACAAAGATCCTGGGTTTGTATTTTCTCTGTGGGAGCATTATGGACGCCAAGAACATGTTTTATCAGCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

102

Amino Acids

11.36

Weight (kDa)

8.9

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21300
fragaria_vesca	FvH4_2g11440 FvH4_2g11440 FvH4_2g11440 FvH4_2g11440 FvH4_2g11440
malus_domestica	MD09G1249500.v1.1 MD17G1242300.v1.1
prunus_persica	Prupe.3G135500_v2.0.a1
pyrus_communis	pycom09g16630 pycom17g24490 pycom17g24500
rosa_chinensis	RchiOBHm_Chr7g0222301
rosa_laevigata	RLG00000002074
rosa_multiflora	Rmu_sc0007069.1_g000017
rosa_roxburghii	Rroxscaffold_3G00237140
rosa_rugosa	Rorug07G0207300 Rorug07G0207300 Rorug07G0207300 Rorug07G0207400 Rorug07G0207500
rosa_samantha	Rh7AG349000 Rh7BG339300 Rh7CG366400 Rh7DG345900
rosa_wichuraiana	Rw7G029520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	175
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	1 cut(s)	232
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	2 cut(s)	5, 232
AfiI	CCNNNNNNNGG	1 cut(s)	100
AflIII	ACRYGT	2 cut(s)	190, 285
AhlI	ACTAGT	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	240
AleI	CACNNNNGTG	1 cut(s)	55
AluBI	AGCT	2 cut(s)	143, 298
AluI	AGCT	2 cut(s)	143, 298
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	213
BciT130I	CCWGG	1 cut(s)	242
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	162
BcuI	ACTAGT	1 cut(s)	208
BfaI	CTAG	1 cut(s)	209
BisI	GCNGC	1 cut(s)	202
BlsI	GCNGC	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	242
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	213
BslFI	GGGAC	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	6
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	151, 237
BspACI	CCGC	1 cut(s)	204
BspPI	GGATC	1 cut(s)	232
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	2 cut(s)	151, 237
BssNI	GRCGYC	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	276
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	3 cut(s)	118, 141, 145
BstKTI	GATC	2 cut(s)	154, 240
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	2 cut(s)	151, 237
BstNI	CCWGG	1 cut(s)	242
BstNSI	RCATGY	2 cut(s)	194, 289
BstSCI	CCNGG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BtsI	GCAGTG	1 cut(s)	154
BtsIMutI	CAGTG	2 cut(s)	62, 154
Cac8I	GCNNGC	3 cut(s)	118, 141, 145
Cfr13I	GGNCC	1 cut(s)	60
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	4, 231
CviAII	CATG	3 cut(s)	185, 191, 286
CviJI	RGCY	4 cut(s)	120, 143, 222, 298
CviKI_1	RGCY	4 cut(s)	120, 143, 222, 298
CviQI	GTAC	2 cut(s)	4, 231
DpnI	GATC	2 cut(s)	153, 239
DpnII	GATC	2 cut(s)	151, 237
Eco47I	GGWCC	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	240
FaeI	CATG	3 cut(s)	188, 194, 289
FaqI	GGGAC	1 cut(s)	6
FatI	CATG	3 cut(s)	184, 190, 285
FbaI	TGATCA	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	202
Fsp4HI	GCNGC	1 cut(s)	202
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	1 cut(s)	202
HgaI	GACGC	1 cut(s)	284
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	3 cut(s)	188, 194, 289
HindIII	AAGCTT	1 cut(s)	141
Hpy166II	GTNNAC	1 cut(s)	176
Hpy8I	GTNNAC	1 cut(s)	176
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4V	TGCA	5 cut(s)	139, 147, 166, 188, 201
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	3 cut(s)	188, 194, 289
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	151, 237
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	3 cut(s)	134, 227, 254
Lsp1109I	GCAGC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	209
MalI	GATC	2 cut(s)	153, 239
MboI	GATC	2 cut(s)	151, 237
MflI	RGATCY	1 cut(s)	237
MluCI	AATT	2 cut(s)	12, 97
MnlI	CCTC	1 cut(s)	233
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	2 cut(s)	55, 189
MspA1I	CMGCKG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
NdeII	GATC	2 cut(s)	151, 237
NlaIII	CATG	3 cut(s)	188, 194, 289
NspI	RCATGY	2 cut(s)	194, 289
OliI	CACNNNNGTG	1 cut(s)	55
PciI	ACATGT	2 cut(s)	190, 285
PkrI	GCNGC	1 cut(s)	203
PscI	ACATGT	2 cut(s)	190, 285
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	237
RsaI	GTAC	2 cut(s)	5, 232
RsaNI	GTAC	2 cut(s)	4, 231
RseI	CAYNNNNRTG	2 cut(s)	55, 189
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	1 cut(s)	202
Sau3AI	GATC	2 cut(s)	151, 237
Sau96I	GGNCC	1 cut(s)	60
ScrFI	CCNGG	1 cut(s)	242
SetI	ASST	3 cut(s)	145, 175, 300
SinI	GGWCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	2 cut(s)	55, 189
SpeI	ACTAGT	1 cut(s)	208
Sse9I	AATT	2 cut(s)	12, 97
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	57
TasI	AATT	2 cut(s)	12, 97
TatI	WGTACW	1 cut(s)	3
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	2 cut(s)	62, 154
TseI	GCWGC	1 cut(s)	201
TspDTI	ATGAA	2 cut(s)	28, 173
TspRI	CASTG	2 cut(s)	62, 154
VpaK11BI	GGWCC	1 cut(s)	60
XceI	RCATGY	2 cut(s)	194, 289
XmiI	GTMKAC	1 cut(s)	175
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.