Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006849

Physical Location & Seq

Genomic Coordinates Forward (+)

44339769 .. 44345465

Gene Structure 5697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG349000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2514 bp

ATGTACAGGAGGATGTTATGTTCATTTTGTAGACCCTTTACACCACAAAACTCCAAGTCCATACATACAAACGCCAACTACTTCCTCAACTTGGAAGCAGCTTTGGCGACCCAATTTGATACTATGTTGCAAGCATGCAGTGACCATTCTCTTATTCAACAAGGTAGACAAGTTCATTCACATGCTATTTGCACTGGGCTTATCGAAAATAGTCTTGTCGCCACAAAGCTGCTTGGCATGTATTTCCATTGTGCTAGTGTTGTGGATGCCAAGAACGTGTTTTATCAGCTTGATTTAAAGTATAGTTTTCCCTGGAACTGTATGATTAGAGGGTTTAGTATAATGGGCCGCTTCGATTTTGCCTTGCTATTTTACTTTAAGATGTTGGCTGCTGGAGTTTCACCTGACAAGTACACTTTTCCCAGTGTAATCAAGGCTTGTGGTGGTTTGAATAATGTGAGATTGGGTAAAGCAGTGCATGATTCAATGCAGTTCATGGGTTTTGAGGTGGATATATACGCCGGTAGTTCTTTACTTCAATTGTATGTCAACAATGGCTGTATCCATGATGCACGCCGCTTGTTTGATAAAATGTCCCACAAAGATTGTGTTTCATGGAATGTCCTGCTTCATGGATATGTTAAAAAGGGGGAATTAAGTAATGCTGTTGGTATATTCATGGAAATGAGAAGTAGTGAAATTAAGGCCAATGCAGTGACATTTTCTTGCATTTTGTCTGTTTGTGCCTCAGAAGCAATGATTGGTTTTGGTACTCAACTTCATGGGTTAGTTGTTGCTTATGGTCTGGAGTCGCATTTTTCAGTGGCTAATACTTTGATAGCAGTCTACTCTAAATGTCATTGCTTGTCTGACGCTCGTACGTTGTTTGATATGATGCCACGAACTGATTTAGTGAGATGGAATGGGATGATATCTGGTTATATACAAAATGGGTTTATGAGTGAGGCTTCACATTTGTTTAAAGAGATGATATCTGCTGGTGTCAAACCTGACTCCATCACATTGGCAAGTTTTCTTCCGTCGGTTGCTCAACCGGCTAACCTCAAGCGAGCTAAAGAAATCCACGGTTACATTATTAGACATTGTGTACCTTTTGATGTGTATTTGAAAAGTGCACTTATCGATGTATACTCCAAGTGCAGAAGTGTGGAGATGGCACGCAATATTTTCAACCAAAGTACCAGAACTGATGTCGTGATGTGCACTGCTATGGTTTCAGGGCTTGTCCTTAATGGGATGAACACTGATGCATTGGAAATTTTTAGATGGATGCTTAGAGACAAATTGAGGCCGAATACTCTCACCATGGCAAGTGTTCTTCCAGCTTGTGCTGGTCTAGCTGCTTTGAAATTGGGAAAGGAATTGCATGGCAATATCCTGAAGCACGGGCTTGATAAAAGCTTTCATGTGGGTAGTGCCCTTACTGGCATGTATGCAAAATCTGGAAGGCTGGATCTTGCTCATCAAGTTTTCCAAAGACTGTCAGAAAGAGATGCAATCTGTTGGAACTCGATGTTAACAAGCTATTCTCAAAATGGTAAACCAGAAGAGGCCATTGATCTATTTCGTCAAATGGGGATGGGAGGTGTAAAGTATGACTGTGTAAGCATTTCAGCTGCACTTTCTGCTTCTGCAAACTTACCAGCACTTCATTATGGGAAAGAGATTCATGGTTTCATTACTAAAAGTGAATTTAGCTCTGATATTTTTGCCGAGAGTGCACTCATAGACATGTATGCCAAATGTGGAAACTTAGTTCTTGCTCGCCGTGTATTTGACTTAATGGAAGAGAAAAATGAAGTTTCATGGAACAGCATTATTTCTGCTTATGGTTATCACGGTCGCCTTAAGGACTCTCTTGTTCTGTTCCGTGATATGCTTGATAATGGAATCCTACCTGATCATGTCACCTTTCTTGGTGTGTTATCAGCTTGTGTCCATGCAGGCCAAGTTGATGATGGAATTCTCTACTTCTGTTGCATGACCGAGGAATATGGGATCCCAGCTTGGTCAGAGCATTATGCCCTCATGGTAGATCTACTTGGGCGTGCTGGACGGTTACACGAAGCATTTGAAACAATAAAGAGCATGCCATTCTCCCCAGGTTCTGGTGTCTGGGGAACATTGCTTGGAGCATGTCGGGTACATGGCAATATTGAGCTTGCTGAAGAAGCATCAAGACATCTTTTTGACCTGGAACCACACAATTCTGGCTATTATATGTTACTCGCAAATATATATGCTGATGCTGGACAATGGGAGAATGTGCGTAAGGTTCGAAATTTGATGAACGAAAGAGGAGTTCAGAAAATTCCTGGGTACAGTTGGATCGAGGTCAACAACAAGACTCATGTATTTGTTGCAGCAGACAGAAGTCACCCGCAATCTGCTAAATTACATTCACTGCTCAACATTCTTCTTCTAGAGCTGAGAAAAGAGGGTTATAATCCTCAACCTTACCTTCCAATGCACCCACAGACAAAGGGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

837

Amino Acids

93.32

Weight (kDa)

7.93

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	105 - 147	9.6e-07	PPR repeat family
PPR_2	PF13041	202 - 249	3.2e-11	PPR repeat family
PPR_3	PF13812	202 - 249	3.9e-07	Pentatricopeptide repeat domain
PPR	PF01535	204 - 232	2e-06	PPR repeat
PPR_2	PF13041	303 - 342	2.9e-08	PPR repeat family
PPR	PF01535	307 - 335	4.2e-07	PPR repeat
PPR_3	PF13812	395 - 451	8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	404 - 451	5.6e-06	PPR repeat family
PPR_2	PF13041	505 - 550	6.2e-08	PPR repeat family
PPR	PF01535	508 - 534	1e-07	PPR repeat
PPR_2	PF13041	606 - 653	3.8e-10	PPR repeat family
PPR	PF01535	608 - 638	2.7e-06	PPR repeat
E_motif	PF20431	723 - 785	2.4e-21	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21300
fragaria_vesca	FvH4_2g11440 FvH4_2g11440 FvH4_2g11440 FvH4_2g11440 FvH4_2g11440
malus_domestica	MD09G1249500.v1.1 MD17G1242300.v1.1
prunus_persica	Prupe.3G135500_v2.0.a1
pyrus_communis	pycom09g16630 pycom17g24490 pycom17g24500
rosa_chinensis	RchiOBHm_Chr7g0222301
rosa_laevigata	RLG00000002074
rosa_multiflora	Rmu_sc0007069.1_g000017
rosa_roxburghii	Rroxscaffold_3G00237140
rosa_rugosa	Rorug07G0207300 Rorug07G0207300 Rorug07G0207300 Rorug07G0207400 Rorug07G0207500
rosa_samantha	Rh7AG349000 Rh7BG339300 Rh7CG366400 Rh7DG345900
rosa_wichuraiana	Rw7G029520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2466
AccB7I	CCANNNNNTGG	1 cut(s)	2129
AccI	GTMKAC	4 cut(s)	31, 166, 846, 1149
AciI	CCGC	3 cut(s)	349, 577, 2402
AclWI	GGATC	4 cut(s)	1482, 2014, 2027, 2357
AcsI	RAATTY	5 cut(s)	1278, 1712, 1983, 2302, 2331
AcuI	CTGAAG	2 cut(s)	1421, 2208
AfaI	GTAC	8 cut(s)	5, 413, 772, 880, 1110, 1201, 2166, 2342
AfiI	CCNNNNNNNGG	2 cut(s)	91, 2129
AflII	CTTAAG	1 cut(s)	1868
AflIII	ACRYGT	2 cut(s)	276, 1752
AgsI	TTSAA	8 cut(s)	158, 451, 486, 539, 1129, 1192, 1369, 2096
AjnI	CCWGG	4 cut(s)	311, 2122, 2214, 2335
AjuI	GAANNNNNNNTTGG	2 cut(s)	744, 776
AloI	GAACNNNNNNTCC	3 cut(s)	36, 1761, 1793
Alw21I	GWGCWC	3 cut(s)	1138, 1226, 1744
Alw26I	GTCTC	1 cut(s)	1293
Alw44I	GTGCAC	3 cut(s)	1134, 1222, 1740
AlwI	GGATC	4 cut(s)	1482, 2014, 2027, 2357
AlwNI	CAGNNNCTG	1 cut(s)	2129
AoxI	GGCC	5 cut(s)	346, 705, 1310, 1572, 1966
ApaLI	GTGCAC	3 cut(s)	1134, 1222, 1740
ApeKI	GCWGC	6 cut(s)	98, 229, 389, 1361, 1637, 2384
ApoI	RAATTY	5 cut(s)	1278, 1712, 1983, 2302, 2331
AspS9I	GGNCC	1 cut(s)	346
AsuHPI	GGTGA	4 cut(s)	393, 1315, 1921, 2390
AsuII	TTCGAA	1 cut(s)	2299
BaeGI	GKGCMC	4 cut(s)	1138, 1226, 1441, 1744
BaeI	ACNNNNGTAYC	2 cut(s)	1183, 1216
BamHI	GGATCC	1 cut(s)	2019
Bbv12I	GWGCWC	3 cut(s)	1138, 1226, 1744
BbvI	GCAGC	6 cut(s)	110, 216, 376, 1348, 1624, 2396
BccI	CCATC	6 cut(s)	912, 1025, 1168, 1281, 1594, 1973
BceAI	ACGGC	1 cut(s)	1773
BciT130I	CCWGG	4 cut(s)	313, 2124, 2216, 2337
BciVI	GTATCC	1 cut(s)	572
BclI	TGATCA	1 cut(s)	1921
BcoDI	GTCTC	1 cut(s)	1293
BfaI	CTAG	3 cut(s)	255, 1358, 2444
BfrI	CTTAAG	1 cut(s)	1868
BfuI	GTATCC	1 cut(s)	572
BglII	AGATCT	1 cut(s)	2056
BisI	GCNGC	8 cut(s)	99, 230, 349, 390, 577, 1362, 1638, 2385
BlsI	GCNGC	8 cut(s)	100, 231, 350, 391, 578, 1363, 1639, 2386
Bme1390I	CCNGG	4 cut(s)	313, 2124, 2216, 2337
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	2 cut(s)	2021, 2220
BmrFI	CCNGG	4 cut(s)	313, 2124, 2216, 2337
BmrI	ACTGGG	2 cut(s)	204, 417
BmsI	GCATC	8 cut(s)	256, 559, 885, 1258, 1281, 1504, 2204, 2257
BmuI	ACTGGG	2 cut(s)	204, 417
BoxI	GACNNNNGTC	1 cut(s)	2394
BpmI	CTGGAG	2 cut(s)	414, 827
Bpu14I	TTCGAA	1 cut(s)	2299
BpuEI	CTTGAG	1 cut(s)	1049
Bsa29I	ATCGAT	1 cut(s)	1143
BsaJI	CCNNGG	6 cut(s)	311, 1084, 1326, 2007, 2122, 2336
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 2129
Bse118I	RCCGGY	2 cut(s)	521, 1054
Bse1I	ACTGG	3 cut(s)	199, 423, 1450
Bse3DI	GCAATG	3 cut(s)	762, 859, 2144
BseBI	CCWGG	4 cut(s)	313, 2124, 2216, 2337
BseCI	ATCGAT	1 cut(s)	1143
BseDI	CCNNGG	6 cut(s)	311, 1084, 1326, 2007, 2122, 2336
BseGI	GGATG	6 cut(s)	18, 271, 933, 1263, 1296, 1605
BseLI	CCNNNNNNNGG	2 cut(s)	91, 2129
BseMI	GCAATG	3 cut(s)	762, 859, 2144
BseMII	CTCAG	2 cut(s)	762, 2441
BseNI	ACTGG	3 cut(s)	199, 423, 1450
BseRI	GAGGAG	1 cut(s)	2334
BseSI	GKGCMC	4 cut(s)	1138, 1226, 1441, 1744
BseXI	GCAGC	6 cut(s)	110, 216, 376, 1348, 1624, 2396
BseYI	CCCAGC	1 cut(s)	2023
BsgI	GTGCAG	2 cut(s)	1180, 1623
Bsh1285I	CGRYCG	1 cut(s)	1864
BshFI	GGCC	5 cut(s)	348, 707, 1312, 1574, 1968
BshVI	ATCGAT	1 cut(s)	1143
BsiEI	CGRYCG	1 cut(s)	1864
BsiHKAI	GWGCWC	3 cut(s)	1138, 1226, 1744
BsiSI	CCGG	2 cut(s)	522, 1055
BsiWI	CGTACG	1 cut(s)	878
BslFI	GGGAC	1 cut(s)	580
BslI	CCNNNNNNNGG	2 cut(s)	91, 2129
BsmAI	GTCTC	1 cut(s)	1293
BsmFI	GGGAC	1 cut(s)	580
BsnI	GGCC	5 cut(s)	348, 707, 1312, 1574, 1968
Bsp119I	TTCGAA	1 cut(s)	2299
Bsp1286I	GDGCHC	4 cut(s)	1138, 1226, 1441, 1744
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	6 cut(s)	1474, 1579, 1921, 2019, 2056, 2349
Bsp19I	CCATGG	1 cut(s)	1326
BspACI	CCGC	3 cut(s)	349, 577, 2402
BspANI	GGCC	5 cut(s)	348, 707, 1312, 1574, 1968
BspCNI	CTCAG	2 cut(s)	761, 2442
BspDI	ATCGAT	1 cut(s)	1143
BspLI	GGNNCC	2 cut(s)	2021, 2220
BspPI	GGATC	4 cut(s)	1482, 2014, 2027, 2357
BspT104I	TTCGAA	1 cut(s)	2299
BspTI	CTTAAG	1 cut(s)	1868
BsrDI	GCAATG	3 cut(s)	762, 859, 2144
BsrFI	RCCGGY	2 cut(s)	521, 1054
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	3 cut(s)	199, 423, 1450
BssAI	RCCGGY	2 cut(s)	521, 1054
BssECI	CCNNGG	6 cut(s)	311, 1084, 1326, 2007, 2122, 2336
BssMI	GATC	6 cut(s)	1474, 1579, 1921, 2019, 2056, 2349
BssNAI	GTATAC	1 cut(s)	1150
BssT1I	CCWWGG	1 cut(s)	1326
Bst1107I	GTATAC	1 cut(s)	1150
Bst2UI	CCWGG	4 cut(s)	313, 2124, 2216, 2337
Bst4CI	ACNGT	7 cut(s)	320, 1088, 1503, 1622, 1862, 2079, 2345
Bst6I	CTCTTC	2 cut(s)	1563, 1803
BstAFI	CTTAAG	1 cut(s)	1868
BstAPI	GCANNNNNTGC	1 cut(s)	1646
BstAUI	TGTACA	1 cut(s)	3
BstBI	TTCGAA	1 cut(s)	2299
BstDEI	CTNAG	4 cut(s)	748, 1295, 1774, 2450
BstDSI	CCRYGG	2 cut(s)	1084, 1326
BstF5I	GGATG	6 cut(s)	18, 271, 933, 1263, 1296, 1605
BstKTI	GATC	6 cut(s)	1477, 1582, 1924, 2022, 2059, 2352
BstMAI	GTCTC	1 cut(s)	1293
BstMBI	GATC	6 cut(s)	1474, 1579, 1921, 2019, 2056, 2349
BstMCI	CGRYCG	1 cut(s)	1864
BstMWI	GCNNNNNNNGC	7 cut(s)	104, 752, 1055, 1358, 1646, 1739, 2192
BstNI	CCWGG	4 cut(s)	313, 2124, 2216, 2337
BstNSI	RCATGY	7 cut(s)	138, 185, 241, 1453, 1756, 2113, 2160
BstPAI	GACNNNNGTC	1 cut(s)	2394
BstSCI	CCNGG	4 cut(s)	311, 2122, 2214, 2335
BstSLI	GKGCMC	4 cut(s)	1138, 1226, 1441, 1744
BstV1I	GCAGC	6 cut(s)	110, 216, 376, 1348, 1624, 2396
BstX2I	RGATCY	3 cut(s)	1474, 2019, 2056
BstXI	CCANNNNNNTGG	1 cut(s)	1024
BstYI	RGATCY	3 cut(s)	1474, 2019, 2056
BstZ17I	GTATAC	1 cut(s)	1150
Bsu15I	ATCGAT	1 cut(s)	1143
BsuI	GTATCC	1 cut(s)	572
BsuRI	GGCC	5 cut(s)	348, 707, 1312, 1574, 1968
BsuTUI	ATCGAT	1 cut(s)	1143
BtgI	CCRYGG	2 cut(s)	1084, 1326
BtsCI	GGATG	6 cut(s)	18, 271, 933, 1263, 1296, 1605
BtsI	GCAGTG	5 cut(s)	145, 480, 720, 1224, 2423
BtsIMutI	CAGTG	9 cut(s)	145, 192, 430, 480, 720, 828, 1224, 1263, 2423
CaiI	CAGNNNCTG	1 cut(s)	2129
Cfr10I	RCCGGY	2 cut(s)	521, 1054
Cfr13I	GGNCC	1 cut(s)	346
ClaI	ATCGAT	1 cut(s)	1143
CseI	GACGC	1 cut(s)	881
Csp6I	GTAC	8 cut(s)	4, 412, 771, 879, 1109, 1200, 2165, 2341
CspCI	CAANNNNNGTGG	4 cut(s)	421, 456, 587, 622
CviQI	GTAC	8 cut(s)	4, 412, 771, 879, 1109, 1200, 2165, 2341
DdeI	CTNAG	4 cut(s)	748, 1295, 1774, 2450
DpnI	GATC	6 cut(s)	1476, 1581, 1923, 2021, 2058, 2351
DpnII	GATC	6 cut(s)	1474, 1579, 1921, 2019, 2056, 2349
DraI	TTTAAA	2 cut(s)	297, 982
Eam1104I	CTCTTC	2 cut(s)	1563, 1803
EarI	CTCTTC	2 cut(s)	1563, 1803
Eco130I	CCWWGG	1 cut(s)	1326
Eco32I	GATATC	2 cut(s)	933, 993
Eco57I	CTGAAG	2 cut(s)	1421, 2208
EcoRI	GAATTC	1 cut(s)	1983
EcoRII	CCWGG	4 cut(s)	311, 2122, 2214, 2335
EcoRV	GATATC	2 cut(s)	933, 993
EcoT14I	CCWWGG	1 cut(s)	1326
EcoT22I	ATGCAT	1 cut(s)	1273
ErhI	CCWWGG	1 cut(s)	1326
FaqI	GGGAC	1 cut(s)	580
FauI	CCCGC	1 cut(s)	2409
FbaI	TGATCA	1 cut(s)	1921
FblI	GTMKAC	4 cut(s)	31, 166, 846, 1149
Fnu4HI	GCNGC	8 cut(s)	99, 230, 349, 390, 577, 1362, 1638, 2385
FokI	GGATG	6 cut(s)	25, 278, 940, 1270, 1303, 1612
Fsp4HI	GCNGC	8 cut(s)	99, 230, 349, 390, 577, 1362, 1638, 2385
FspBI	CTAG	3 cut(s)	255, 1358, 2444
GluI	GCNGC	8 cut(s)	99, 230, 349, 390, 577, 1362, 1638, 2385
GsaI	CCCAGC	1 cut(s)	2027
GsuI	CTGGAG	2 cut(s)	414, 827
HaeIII	GGCC	5 cut(s)	348, 707, 1312, 1574, 1968
HapII	CCGG	2 cut(s)	522, 1055
HgaI	GACGC	1 cut(s)	881
HincII	GTYRAC	3 cut(s)	550, 1539, 2359
HindII	GTYRAC	3 cut(s)	550, 1539, 2359
HindIII	AAGCTT	1 cut(s)	1420
HinfI	GANTC	7 cut(s)	482, 809, 1013, 1687, 1874, 1911, 2368
HpaI	GTTAAC	1 cut(s)	1539
HpaII	CCGG	2 cut(s)	522, 1055
HphI	GGTGA	4 cut(s)	393, 1315, 1921, 2390
Hpy188I	TCNGA	6 cut(s)	751, 871, 1507, 1723, 2035, 2328
Hpy188III	TCNNGA	6 cut(s)	806, 1216, 1399, 1464, 2199, 2444
Hpy99I	CGWCG	1 cut(s)	1045
HpyAV	CCTTC	2 cut(s)	1461, 2492
HpyCH4III	ACNGT	7 cut(s)	320, 1088, 1503, 1622, 1862, 2079, 2345
HpyCH4IV	ACGT	2 cut(s)	276, 881
HpyF10VI	GCNNNNNNNGC	7 cut(s)	104, 752, 1055, 1358, 1646, 1739, 2192
HpyF3I	CTNAG	4 cut(s)	748, 1295, 1774, 2450
HpySE526I	ACGT	2 cut(s)	276, 881
Ksp22I	TGATCA	1 cut(s)	1921
KspAI	GTTAAC	1 cut(s)	1539
Kzo9I	GATC	6 cut(s)	1474, 1579, 1921, 2019, 2056, 2349
LmnI	GCTCC	1 cut(s)	2153
Lsp1109I	GCAGC	6 cut(s)	110, 216, 376, 1348, 1624, 2396
LweI	GCATC	8 cut(s)	256, 559, 885, 1258, 1281, 1504, 2204, 2257
MaeI	CTAG	3 cut(s)	255, 1358, 2444
MaeII	ACGT	2 cut(s)	276, 881
MaeIII	GTNAC	7 cut(s)	140, 715, 1088, 1927, 2079, 2244, 2396
MalI	GATC	6 cut(s)	1476, 1581, 1923, 2021, 2058, 2351
MboI	GATC	6 cut(s)	1474, 1579, 1921, 2019, 2056, 2349
MboII	GAAGA	7 cut(s)	1028, 1331, 1580, 1820, 2201, 2429, 2432
MfeI	CAATTG	1 cut(s)	539
MflI	RGATCY	3 cut(s)	1474, 2019, 2056
MhlI	GDGCHC	4 cut(s)	1138, 1226, 1441, 1744
MlyI	GAGTC	4 cut(s)	818, 1007, 1868, 2362
MmeI	TCCRAC	2 cut(s)	1505, 2327
Mph1103I	ATGCAT	1 cut(s)	1273
MslI	CAYNNNNRTG	5 cut(s)	180, 636, 683, 1229, 1751
MspA1I	CMGCKG	1 cut(s)	1637
MspCI	CTTAAG	1 cut(s)	1868
MspI	CCGG	2 cut(s)	522, 1055
MspR9I	CCNGG	4 cut(s)	313, 2124, 2216, 2337
MunI	CAATTG	1 cut(s)	539
MvaI	CCWGG	4 cut(s)	313, 2124, 2216, 2337
MwoI	GCNNNNNNNGC	7 cut(s)	104, 752, 1055, 1358, 1646, 1739, 2192
NcoI	CCATGG	1 cut(s)	1326
NdeII	GATC	6 cut(s)	1474, 1579, 1921, 2019, 2056, 2349
NlaIV	GGNNCC	2 cut(s)	2021, 2220
NmeAIII	GCCGAG	1 cut(s)	1759
NmuCI	GTSAC	4 cut(s)	140, 715, 1927, 2396
NsiI	ATGCAT	1 cut(s)	1273
NspI	RCATGY	7 cut(s)	138, 185, 241, 1453, 1756, 2113, 2160
NspV	TTCGAA	1 cut(s)	2299
PaeI	GCATGC	2 cut(s)	138, 2113
PciI	ACATGT	1 cut(s)	1752
PfeI	GAWTC	3 cut(s)	482, 1687, 1911
Pfl23II	CGTACG	1 cut(s)	878
PflMI	CCANNNNNTGG	1 cut(s)	2129
PkrI	GCNGC	8 cut(s)	100, 231, 350, 391, 578, 1363, 1639, 2386
PleI	GAGTC	4 cut(s)	817, 1007, 1868, 2362
PpsI	GAGTC	4 cut(s)	817, 1007, 1868, 2362
PscI	ACATGT	1 cut(s)	1752
PshAI	GACNNNNGTC	1 cut(s)	2394
PsiI	TTATAA	1 cut(s)	2466
Psp6I	CCWGG	4 cut(s)	311, 2122, 2214, 2335
PspFI	CCCAGC	1 cut(s)	2023
PspGI	CCWGG	4 cut(s)	311, 2122, 2214, 2335
PspLI	CGTACG	1 cut(s)	878
PspN4I	GGNNCC	2 cut(s)	2021, 2220
PspPI	GGNCC	1 cut(s)	346
PstNI	CAGNNNCTG	1 cut(s)	2129
PsuI	RGATCY	3 cut(s)	1474, 2019, 2056
PvuII	CAGCTG	1 cut(s)	1637
RsaI	GTAC	8 cut(s)	5, 413, 772, 880, 1110, 1201, 2166, 2342
RsaNI	GTAC	8 cut(s)	4, 412, 771, 879, 1109, 1200, 2165, 2341
RseI	CAYNNNNRTG	5 cut(s)	180, 636, 683, 1229, 1751
SatI	GCNGC	8 cut(s)	99, 230, 349, 390, 577, 1362, 1638, 2385
Sau3AI	GATC	6 cut(s)	1474, 1579, 1921, 2019, 2056, 2349
Sau96I	GGNCC	1 cut(s)	346
SchI	GAGTC	4 cut(s)	818, 1007, 1868, 2362
ScrFI	CCNGG	4 cut(s)	313, 2124, 2216, 2337
SduI	GDGCHC	4 cut(s)	1138, 1226, 1441, 1744
SfaNI	GCATC	8 cut(s)	256, 559, 885, 1258, 1281, 1504, 2204, 2257
SfuI	TTCGAA	1 cut(s)	2299
SmiMI	CAYNNNNRTG	5 cut(s)	180, 636, 683, 1229, 1751
SmlI	CTYRAG	2 cut(s)	1064, 1868
SmoI	CTYRAG	2 cut(s)	1064, 1868
SphI	GCATGC	2 cut(s)	138, 2113
SsiI	CCGC	3 cut(s)	349, 577, 2402
SspI	AATATT	2 cut(s)	1186, 2176
SspMI	CTAG	3 cut(s)	255, 1358, 2444
StyD4I	CCNGG	4 cut(s)	311, 2122, 2214, 2335
StyI	CCWWGG	1 cut(s)	1326
TaaI	ACNGT	7 cut(s)	320, 1088, 1503, 1622, 1862, 2079, 2345
TaiI	ACGT	2 cut(s)	279, 884
TaqI	TCGA	6 cut(s)	204, 354, 1143, 1532, 2299, 2352
TaqII	GACCGA	1 cut(s)	2021
TatI	WGTACW	2 cut(s)	3, 411
TauI	GCSGC	2 cut(s)	351, 579
TfiI	GAWTC	3 cut(s)	482, 1687, 1911
TscAI	CASTG	9 cut(s)	145, 199, 430, 480, 720, 828, 1231, 1270, 2430
TseFI	GTSAC	4 cut(s)	140, 715, 1927, 2396
TseI	GCWGC	6 cut(s)	98, 229, 389, 1361, 1637, 2384
Tsp45I	GTSAC	4 cut(s)	140, 715, 1927, 2396
TspGWI	ACGGA	2 cut(s)	1029, 1880
TspRI	CASTG	9 cut(s)	145, 199, 430, 480, 720, 828, 1231, 1270, 2430
Van91I	CCANNNNNTGG	1 cut(s)	2129
Vha464I	CTTAAG	1 cut(s)	1868
VneI	GTGCAC	3 cut(s)	1134, 1222, 1740
XapI	RAATTY	5 cut(s)	1278, 1712, 1983, 2302, 2331
XbaI	TCTAGA	1 cut(s)	2443
XceI	RCATGY	7 cut(s)	138, 185, 241, 1453, 1756, 2113, 2160
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1976
XmiI	GTMKAC	4 cut(s)	31, 166, 846, 1149
XspI	CTAG	3 cut(s)	255, 1358, 2444
Zsp2I	ATGCAT	1 cut(s)	1273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.