Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006849

Physical Location & Seq

Genomic Coordinates Reverse (-)

18262621 .. 18264730

Gene Structure 2110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0207400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGCATGCCTTCATCTTCTTCATCCTCTTCTTTACTTCCATCTTTCTTGAAACAGAAGCCTCCGGTGAAATCTGCAAAACAAAGAAATGTGCTGTTGGGGCTCCCAAAATTCAGTTTCCTTTCCAATTAAAAAGCCAGCAGCCCCAACACTGTGGTCTCCCTGGTTTTGATCTTGACTGCAGCAACAACAGAACCACGATCCACATCCCGTCTTATGGTGACTTGATTGTGAAATCTATCTCCTACGATATCAAGAAACTTGAGCTCCTTGACCCCAAGAATTGTGTTCATGGAGTCTTTCTTAATCTCAATCTCTCCCTTACACCATTTCAATACTACTATGTCATGAAAGAGTACTCGTATCTCAATTGTTCGGTTAGGCTGTCAAAATGTTTCAGAGAAGTTCCCTGCTTGAGTGGCTCTGGCTACCATGTTTACACTGTTAAGCCTACTTTCGCTATACCAAATTCTTGCAGGGTGGTGAAAACTGTTCCTATTCCTTTTGAGTATAGTCCCTATCTGAGTGACAATAGCTTCGGTCTGGGATTAACCTGGAACTTACTTGGGCATGAAGATTCTCATGAAGCAAAAGTAGGGTCATTGCAGACTCGAACAGAACAAGAAACTGATTGCTTCACTATCGCACATGTTAAAGTGTGTATTGCAATTCTTATTTTCGTGGCGGCAGCAGTTATTATAAGAGTAAACATGAATCAATCCAGAAAACTACATTATCAGAAACAAGGGGAAAATCAAATTCAGGTTGAGAAACTACTGGGAGAGTACAGAGCCAATAAGACCGGAAGATATCATGAAGCTGATCTCAAGCAAAGCAACAGTCAGTGTGAAACAGTTATGGACATTAAAATCATGAAGAACCAGAAAGTGCAATTGCTATTGCTGAATAATCATCCACAGTTGAAGCAGTCACCGCATTATTTTATTCCAGCATGCTTTGCTCTGCAATTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

324

Amino Acids

36.94

Weight (kDa)

8.58

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	25 - 89	2.9e-15	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21300
fragaria_vesca	FvH4_2g11440 FvH4_2g11440 FvH4_2g11440 FvH4_2g11440 FvH4_2g11440
malus_domestica	MD09G1249500.v1.1 MD17G1242300.v1.1
prunus_persica	Prupe.3G135500_v2.0.a1
pyrus_communis	pycom09g16630 pycom17g24490 pycom17g24500
rosa_chinensis	RchiOBHm_Chr7g0222301
rosa_laevigata	RLG00000002074
rosa_multiflora	Rmu_sc0007069.1_g000017
rosa_roxburghii	Rroxscaffold_3G00237140
rosa_rugosa	Rorug07G0207300 Rorug07G0207300 Rorug07G0207300 Rorug07G0207400 Rorug07G0207500
rosa_samantha	Rh7AG349000 Rh7BG339300 Rh7CG366400 Rh7DG345900
rosa_wichuraiana	Rw7G029520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	698
AciI	CCGC	2 cut(s)	683, 932
AclWI	GGATC	1 cut(s)	193
AcsI	RAATTY	3 cut(s)	108, 466, 756
AfaI	GTAC	2 cut(s)	356, 785
AfiI	CCNNNNNNNGG	1 cut(s)	215
AflIII	ACRYGT	1 cut(s)	646
AgsI	TTSAA	3 cut(s)	50, 332, 922
AjnI	CCWGG	2 cut(s)	160, 551
AluBI	AGCT	3 cut(s)	265, 534, 818
AluI	AGCT	3 cut(s)	265, 534, 818
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	1 cut(s)	193
ApeKI	GCWGC	3 cut(s)	139, 180, 686
ApoI	RAATTY	3 cut(s)	108, 466, 756
ArsI	GACNNNNNNTTYG	6 cut(s)	518, 550, 581, 613, 823, 855
AsuHPI	GGTGA	4 cut(s)	77, 230, 493, 921
BanII	GRGCYC	2 cut(s)	103, 267
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	3 cut(s)	151, 192, 698
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	2 cut(s)	162, 553
BcoDI	GTCTC	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	178
BisI	GCNGC	4 cut(s)	140, 181, 684, 687
BlsI	GCNGC	4 cut(s)	141, 182, 685, 688
BmcAI	AGTACT	1 cut(s)	356
Bme1390I	CCNGG	2 cut(s)	162, 553
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	2 cut(s)	162, 553
BmrI	ACTGGG	1 cut(s)	785
BmuI	ACTGGG	1 cut(s)	785
BpuEI	CTTGAG	3 cut(s)	281, 433, 809
BsaBI	GATNNNNATC	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	160
BsaWI	WCCGGW	2 cut(s)	62, 800
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	780
Bse3DI	GCAATG	1 cut(s)	599
Bse8I	GATNNNNATC	1 cut(s)	203
BseBI	CCWGG	2 cut(s)	162, 553
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	3 cut(s)	21, 204, 910
BseJI	GATNNNNATC	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMI	GCAATG	1 cut(s)	599
BseMII	CTCAG	1 cut(s)	512
BseNI	ACTGG	1 cut(s)	780
BseXI	GCAGC	3 cut(s)	151, 192, 698
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	2 cut(s)	63, 801
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	498
Bso31I	GGTCTC	1 cut(s)	161
Bsp1286I	GDGCHC	2 cut(s)	103, 267
Bsp143I	GATC	3 cut(s)	169, 198, 820
BspACI	CCGC	2 cut(s)	683, 932
BspCNI	CTCAG	1 cut(s)	513
BspHI	TCATGA	4 cut(s)	345, 580, 811, 870
BspLI	GGNNCC	1 cut(s)	102
BspMAI	CTGCAG	1 cut(s)	182
BspPI	GGATC	1 cut(s)	193
BspTNI	GGTCTC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	599
BsrI	ACTGG	1 cut(s)	780
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	3 cut(s)	169, 198, 820
Bst2UI	CCWGG	2 cut(s)	162, 553
Bst4CI	ACNGT	6 cut(s)	152, 442, 490, 839, 853, 918
Bst6I	CTCTTC	1 cut(s)	32
BstAPI	GCANNNNNTGC	1 cut(s)	956
BstC8I	GCNNGC	3 cut(s)	6, 137, 952
BstDEI	CTNAG	1 cut(s)	521
BstF5I	GGATG	3 cut(s)	21, 204, 910
BstKTI	GATC	3 cut(s)	172, 201, 823
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	3 cut(s)	169, 198, 820
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 417, 931, 956
BstNI	CCWGG	2 cut(s)	162, 553
BstNSI	RCATGY	3 cut(s)	8, 650, 954
BstSCI	CCNGG	2 cut(s)	160, 551
BstSFI	CTRYAG	1 cut(s)	178
BstV1I	GCAGC	3 cut(s)	151, 192, 698
BstXI	CCANNNNNNTGG	1 cut(s)	152
BtsCI	GGATG	3 cut(s)	21, 204, 910
BtsIMutI	CAGTG	3 cut(s)	148, 438, 848
Cac8I	GCNNGC	3 cut(s)	6, 137, 952
CciI	TCATGA	4 cut(s)	345, 580, 811, 870
Csp6I	GTAC	2 cut(s)	355, 784
CviQI	GTAC	2 cut(s)	355, 784
DdeI	CTNAG	1 cut(s)	521
DpnI	GATC	3 cut(s)	171, 200, 822
DpnII	GATC	3 cut(s)	169, 198, 820
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	265
Eco24I	GRGCYC	2 cut(s)	103, 267
Eco31I	GGTCTC	1 cut(s)	161
Eco32I	GATATC	2 cut(s)	250, 809
Eco53kI	GAGCTC	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	265
EcoRII	CCWGG	2 cut(s)	160, 551
EcoRV	GATATC	2 cut(s)	250, 809
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	103, 267
FaqI	GGGAC	1 cut(s)	498
Fnu4HI	GCNGC	4 cut(s)	140, 181, 684, 687
FokI	GGATG	3 cut(s)	8, 191, 897
FriOI	GRGCYC	2 cut(s)	103, 267
Fsp4HI	GCNGC	4 cut(s)	140, 181, 684, 687
GluI	GCNGC	4 cut(s)	140, 181, 684, 687
HapII	CCGG	2 cut(s)	63, 801
HinfI	GANTC	4 cut(s)	294, 575, 607, 712
HpaII	CCGG	2 cut(s)	63, 801
HphI	GGTGA	4 cut(s)	77, 230, 493, 921
Hpy166II	GTNNAC	2 cut(s)	436, 706
Hpy188I	TCNGA	3 cut(s)	398, 522, 738
Hpy188III	TCNNGA	8 cut(s)	47, 173, 253, 346, 581, 720, 812, 871
Hpy8I	GTNNAC	2 cut(s)	436, 706
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	6 cut(s)	152, 442, 490, 839, 853, 918
HpyCH4V	TGCA	8 cut(s)	4, 75, 180, 474, 604, 665, 889, 964
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 417, 931, 956
HpyF3I	CTNAG	1 cut(s)	521
Kzo9I	GATC	3 cut(s)	169, 198, 820
LmnI	GCTCC	2 cut(s)	106, 270
Lsp1109I	GCAGC	3 cut(s)	151, 192, 698
MaeIII	GTNAC	3 cut(s)	218, 524, 927
MalI	GATC	3 cut(s)	171, 200, 822
MboI	GATC	3 cut(s)	169, 198, 820
MboII	GAAGA	6 cut(s)	7, 10, 19, 584, 816, 886
MfeI	CAATTG	3 cut(s)	367, 890, 965
MhlI	GDGCHC	2 cut(s)	103, 267
MluCI	AATT	9 cut(s)	108, 125, 280, 367, 466, 666, 756, 890, 965
MlyI	GAGTC	2 cut(s)	303, 601
MnlI	CCTC	2 cut(s)	35, 70
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	6 cut(s)	128, 303, 444, 548, 651, 864
MspI	CCGG	2 cut(s)	63, 801
MspR9I	CCNGG	2 cut(s)	162, 553
MunI	CAATTG	3 cut(s)	367, 890, 965
MvaI	CCWGG	2 cut(s)	162, 553
MwoI	GCNNNNNNNGC	4 cut(s)	98, 417, 931, 956
NdeII	GATC	3 cut(s)	169, 198, 820
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	3 cut(s)	218, 524, 927
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	3 cut(s)	8, 650, 954
PaeI	GCATGC	2 cut(s)	8, 954
PagI	TCATGA	4 cut(s)	345, 580, 811, 870
PciI	ACATGT	1 cut(s)	646
PfeI	GAWTC	2 cut(s)	575, 712
PkrI	GCNGC	4 cut(s)	141, 182, 685, 688
PleI	GAGTC	2 cut(s)	302, 601
PpsI	GAGTC	2 cut(s)	302, 601
PscI	ACATGT	1 cut(s)	646
PsiI	TTATAA	1 cut(s)	698
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	160, 551
PspGI	CCWGG	2 cut(s)	160, 551
PspN4I	GGNNCC	1 cut(s)	102
PstI	CTGCAG	1 cut(s)	182
RsaI	GTAC	2 cut(s)	356, 785
RsaNI	GTAC	2 cut(s)	355, 784
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	6 cut(s)	128, 303, 444, 548, 651, 864
SatI	GCNGC	4 cut(s)	140, 181, 684, 687
Sau3AI	GATC	3 cut(s)	169, 198, 820
ScaI	AGTACT	1 cut(s)	356
SchI	GAGTC	2 cut(s)	303, 601
ScrFI	CCNGG	2 cut(s)	162, 553
SduI	GDGCHC	2 cut(s)	103, 267
SetI	ASST	5 cut(s)	267, 536, 554, 765, 820
SfcI	CTRYAG	1 cut(s)	178
SmlI	CTYRAG	3 cut(s)	260, 412, 824
SmoI	CTYRAG	3 cut(s)	260, 412, 824
SphI	GCATGC	2 cut(s)	8, 954
Sse9I	AATT	9 cut(s)	108, 125, 280, 367, 466, 666, 756, 890, 965
SsiI	CCGC	2 cut(s)	683, 932
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	2 cut(s)	160, 551
TaaI	ACNGT	6 cut(s)	152, 442, 490, 839, 853, 918
TaqI	TCGA	1 cut(s)	610
TaqII	GACCGA	1 cut(s)	527
TasI	AATT	9 cut(s)	108, 125, 280, 367, 466, 666, 756, 890, 965
TatI	WGTACW	2 cut(s)	354, 783
TauI	GCSGC	1 cut(s)	686
TfiI	GAWTC	2 cut(s)	575, 712
Tru1I	TTAA	6 cut(s)	128, 303, 444, 548, 651, 864
Tru9I	TTAA	6 cut(s)	128, 303, 444, 548, 651, 864
TscAI	CASTG	3 cut(s)	155, 445, 848
TseFI	GTSAC	3 cut(s)	218, 524, 927
TseI	GCWGC	3 cut(s)	139, 180, 686
Tsp45I	GTSAC	3 cut(s)	218, 524, 927
TspDTI	ATGAA	8 cut(s)	10, 278, 362, 585, 597, 725, 828, 887
TspRI	CASTG	3 cut(s)	155, 445, 848
XapI	RAATTY	3 cut(s)	108, 466, 756
XceI	RCATGY	3 cut(s)	8, 650, 954
ZrmI	AGTACT	1 cut(s)	356
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.