pycom10g05510

Ring finger

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
5839976 .. 5842848
2873 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1314 bp
ATGGGTTCTGCTTGTTGTGTTGCTGCTAGAGACAAGACTGTAACAAACAGAGCTAATAGCGAAATTGTGCATCGTAATATGCGGTACTCACCAACTTGGAGCTTTCGGTGGGATAACCGGGTGGGGGTGGCAGCTGAAGAGACCTCTGTAAGTTGGTTTTCTGATGGTGTTAGCAGAAATGATGGATCAGAAGTTAAATTTGAGTCGGCATGTGTATCTGAGGAGGGAAGTCCACTGGAACATTTTCGAAGACATACGGCGCAAAAATCTTCAGTATCTGAGGGAACTGCCGGGCATGTCCGGACTCCTGCTTCAGATCAATCCATTTCAAGAAATATTTCCATGGATGCAAGTCTTGAGCAGGTAAAAGAGTCAGAAGAGTCCCCTACTGTTTCATATCCATCCCCAACAAAATTATCAGTTTCGTTGCCTTCTACTTCATCCTTGTCAGCATCCCCTTTGTCATCCCAGAGTCACCTGCCTCCTCCGAGCTCAACTCCATTGAGGTGGCCCCGCTGTTCTCCAGGACATCAGCTATTAAGGCAAGTATCTGATGGCCGAGTCCCAGGAAACAAGTCACCCAACAGCTTCTCAATTTCTGAAGATAAGGCAAGGCCTCCCTCATGGAGCAATGAATCTGCTAGGGGCTCCCGTGGTGGTTCTTCTGATAGTTGGTCTATGAATGCATTTTCCGAGCTCATGGCCACATCTAATAGAGAAAGGTGGTCTTTTGATAGCGAGTCCTTTGGCTTTAATCGTGAAAAGATAACGAGATCCAGTAGCAGAGTTTCAGCTTCACCCTCTGTTGATTCGCAGACATGTGGGGTTTGCTCAAAGCTTTTGGGTGAGAAATCTTCATGGAGCAGCCAAAAGATTATTGCAACCAATGAGCTTTCTGTGGTTTCTGTGTTAATTTGTGGACATGTTTATCATGCCGAGTGTTTGGAGAATATGACACCTGAAATTAACAAGTATGACCCAGCTTGCCCAGTTTGTACTTTTGGGGAGAAACAGATCCACAAGTTGTCCGAAAAAGCATTGAAAGCTGAAATGGATTTGAAGGTTAGAAACAAGAGATCGAGGAACCGGGTGTTAGATCTTGATGGTGATTCTGCTGTGTTTGATCGCTTGAAAAGCACCGGACATCAAGGAAAGGATCCTAAGTTGGGATCCAGTTCCAGCATGAAAGGCTCCTTGGGAAAGCCTTTTTTGAGACGGCACTTCTCATTTGGCTCCAAGAGCGCTCGAGCCCTATCGGAGAATCATTCTACTAGAAAGAAAGGGTTCTTCTGGGCCAAATCCAGCAAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

438

Amino Acids

47.9

Weight (kDa)

9.36

Isoelectric Point (pI)

65.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 486
Acc36I ACCTGC 2 cut(s) 352, 486
AccIII TCCGGA 1 cut(s) 300
AciI CCGC 2 cut(s) 82, 514
AclWI GGATC 7 cut(s) 193, 768, 1009, 1151, 1164, 1164, 1177
AcoI YGGCCR 2 cut(s) 556, 702
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 4 cut(s) 156, 255, 297, 621
AfaI GTAC 2 cut(s) 86, 997
AfeI AGCGCT 1 cut(s) 1243
AfiI CCNNNNNNNGG 2 cut(s) 124, 1166
AflIII ACRYGT 2 cut(s) 818, 922
AgsI TTSAA 4 cut(s) 330, 1042, 1060, 1132
AjnI CCWGG 2 cut(s) 523, 565
AjuI GAANNNNNNNTTGG 2 cut(s) 1178, 1210
Alw21I GWGCWC 2 cut(s) 494, 699
Alw26I GTCTC 3 cut(s) 24, 134, 1207
AlwI GGATC 7 cut(s) 193, 768, 1009, 1151, 1164, 1164, 1177
AlwNI CAGNNNCTG 1 cut(s) 278
Ama87I CYCGRG 1 cut(s) 1245
Aor13HI TCCGGA 1 cut(s) 300
Aor51HI AGCGCT 1 cut(s) 1243
AoxI GGCC 5 cut(s) 509, 556, 614, 702, 1293
ApeKI GCWGC 3 cut(s) 23, 131, 864
ApoI RAATTY 1 cut(s) 197
Asp700I GAANNNNTTC 3 cut(s) 243, 337, 1283
AspLEI GCGC 2 cut(s) 262, 1244
AspS9I GGNCC 2 cut(s) 510, 1293
AsuC2I CCSGG 3 cut(s) 119, 292, 1088
AsuHPI GGTGA 6 cut(s) 81, 467, 570, 789, 857, 1118
AsuII TTCGAA 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 1245
BalI TGGCCA 1 cut(s) 704
BamHI GGATCC 2 cut(s) 1156, 1169
BanII GRGCYC 4 cut(s) 494, 650, 699, 1252
BbsI GAAGAC 1 cut(s) 256
Bbv12I GWGCWC 2 cut(s) 494, 699
BbvI GCAGC 3 cut(s) 10, 143, 876
BccI CCATC 5 cut(s) 158, 176, 409, 548, 1097
BceAI ACGGC 2 cut(s) 273, 1232
BciT130I CCWGG 2 cut(s) 525, 567
BcnI CCSGG 3 cut(s) 119, 292, 1088
BcoDI GTCTC 3 cut(s) 24, 134, 1207
BfaI CTAG 3 cut(s) 27, 642, 1272
BfoI RGCGCY 1 cut(s) 1245
BfuAI ACCTGC 2 cut(s) 352, 486
BglII AGATCT 1 cut(s) 1096
BisI GCNGC 3 cut(s) 24, 132, 865
BlsI GCNGC 3 cut(s) 25, 133, 866
Bme1390I CCNGG 5 cut(s) 119, 292, 525, 567, 1088
BmeT110I CYCGRG 1 cut(s) 1245
BmgT120I GGNCC 2 cut(s) 510, 1293
BmiI GGNNCC 7 cut(s) 512, 649, 1085, 1158, 1171, 1192, 1234
BmrFI CCNGG 5 cut(s) 119, 292, 525, 567, 1088
BmrI ACTGGG 1 cut(s) 983
BmsI GCATC 3 cut(s) 79, 337, 461
BmuI ACTGGG 1 cut(s) 983
BpiI GAAGAC 1 cut(s) 256
BplI GAGNNNNNCTC 2 cut(s) 481, 513
BpmI CTGGAG 1 cut(s) 507
Bpu14I TTCGAA 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 3 cut(s) 119, 292, 1088
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 4 cut(s) 342, 565, 652, 1194
BsaWI WCCGGW 2 cut(s) 300, 1139
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 1166
Bse1I ACTGG 4 cut(s) 240, 777, 989, 1173
Bse3DI GCAATG 1 cut(s) 637
BseAI TCCGGA 1 cut(s) 300
BseBI CCWGG 2 cut(s) 525, 567
BseDI CCNNGG 4 cut(s) 342, 565, 652, 1194
BseGI GGATG 5 cut(s) 352, 401, 440, 452, 464
BseLI CCNNNNNNNGG 2 cut(s) 124, 1166
BseMI GCAATG 1 cut(s) 637
BseMII CTCAG 2 cut(s) 210, 270
BseNI ACTGG 4 cut(s) 240, 777, 989, 1173
BseRI GAGGAG 2 cut(s) 236, 474
BseXI GCAGC 3 cut(s) 10, 143, 876
BseYI CCCAGC 1 cut(s) 979
BshFI GGCC 5 cut(s) 511, 558, 616, 704, 1295
BsiHKAI GWGCWC 2 cut(s) 494, 699
BsiHKCI CYCGRG 1 cut(s) 1245
BsiSI CCGG 5 cut(s) 118, 291, 301, 1087, 1140
BslFI GGGAC 2 cut(s) 367, 548
BslI CCNNNNNNNGG 2 cut(s) 124, 1166
BsmAI GTCTC 3 cut(s) 24, 134, 1207
BsmBI CGTCTC 1 cut(s) 1207
BsmFI GGGAC 2 cut(s) 367, 548
BsmI GAATGC 1 cut(s) 688
BsnI GGCC 5 cut(s) 511, 558, 616, 704, 1295
Bso31I GGTCTC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 1245
Bsp119I TTCGAA 1 cut(s) 247
Bsp1286I GDGCHC 4 cut(s) 494, 650, 699, 1252
Bsp13I TCCGGA 1 cut(s) 300
Bsp143I GATC 9 cut(s) 185, 316, 773, 1014, 1076, 1096, 1123, 1156, 1169
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 2 cut(s) 82, 514
BspANI GGCC 5 cut(s) 511, 558, 616, 704, 1295
BspCNI CTCAG 2 cut(s) 211, 271
BspEI TCCGGA 1 cut(s) 300
BspLI GGNNCC 7 cut(s) 512, 649, 1085, 1158, 1171, 1192, 1234
BspMI ACCTGC 2 cut(s) 352, 486
BspPI GGATC 7 cut(s) 193, 768, 1009, 1151, 1164, 1164, 1177
BspT104I TTCGAA 1 cut(s) 247
BspTNI GGTCTC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 637
BsrI ACTGG 4 cut(s) 240, 777, 989, 1173
BssECI CCNNGG 4 cut(s) 342, 565, 652, 1194
BssMI GATC 9 cut(s) 185, 316, 773, 1014, 1076, 1096, 1123, 1156, 1169
BssT1I CCWWGG 2 cut(s) 342, 1194
Bst2UI CCWGG 2 cut(s) 525, 567
Bst4CI ACNGT 2 cut(s) 40, 391
Bst6I CTCTTC 2 cut(s) 132, 372
BstBI TTCGAA 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 985
BstDEI CTNAG 3 cut(s) 219, 279, 1161
BstDSI CCRYGG 2 cut(s) 342, 652
BstF5I GGATG 5 cut(s) 352, 401, 440, 452, 464
BstH2I RGCGCY 1 cut(s) 1245
BstHHI GCGC 2 cut(s) 262, 1244
BstKTI GATC 9 cut(s) 188, 319, 776, 1017, 1079, 1099, 1126, 1159, 1172
BstMAI GTCTC 3 cut(s) 24, 134, 1207
BstMBI GATC 9 cut(s) 185, 316, 773, 1014, 1076, 1096, 1123, 1156, 1169
BstMWI GCNNNNNNNGC 5 cut(s) 541, 1043, 1134, 1188, 1239
BstNI CCWGG 2 cut(s) 525, 567
BstNSI RCATGY 4 cut(s) 213, 299, 822, 926
BstSCI CCNGG 5 cut(s) 117, 290, 523, 565, 1086
BstV1I GCAGC 3 cut(s) 10, 143, 876
BstV2I GAAGAC 1 cut(s) 256
BstX2I RGATCY 5 cut(s) 773, 1014, 1096, 1156, 1169
BstXI CCANNNNNNTGG 1 cut(s) 507
BstYI RGATCY 5 cut(s) 773, 1014, 1096, 1156, 1169
BsuRI GGCC 5 cut(s) 511, 558, 616, 704, 1295
BtgI CCRYGG 2 cut(s) 342, 652
BtsCI GGATG 5 cut(s) 352, 401, 440, 452, 464
BtsIMutI CAGTG 1 cut(s) 233
BveI ACCTGC 2 cut(s) 352, 486
Cac8I GCNNGC 1 cut(s) 985
CaiI CAGNNNCTG 1 cut(s) 278
CfoI GCGC 2 cut(s) 262, 1244
Cfr13I GGNCC 2 cut(s) 510, 1293
Csp6I GTAC 2 cut(s) 85, 996
CviQI GTAC 2 cut(s) 85, 996
DdeI CTNAG 3 cut(s) 219, 279, 1161
DpnI GATC 9 cut(s) 187, 318, 775, 1016, 1078, 1098, 1125, 1158, 1171
DpnII GATC 9 cut(s) 185, 316, 773, 1014, 1076, 1096, 1123, 1156, 1169
EaeI YGGCCR 2 cut(s) 556, 702
Eam1104I CTCTTC 2 cut(s) 132, 372
EarI CTCTTC 2 cut(s) 132, 372
Ecl136II GAGCTC 2 cut(s) 492, 697
Eco130I CCWWGG 2 cut(s) 342, 1194
Eco147I AGGCCT 1 cut(s) 616
Eco24I GRGCYC 4 cut(s) 494, 650, 699, 1252
Eco31I GGTCTC 1 cut(s) 134
Eco47III AGCGCT 1 cut(s) 1243
Eco53kI GAGCTC 2 cut(s) 492, 697
Eco57I CTGAAG 4 cut(s) 156, 255, 297, 621
Eco88I CYCGRG 1 cut(s) 1245
EcoICRI GAGCTC 2 cut(s) 492, 697
EcoRII CCWGG 2 cut(s) 523, 565
EcoT14I CCWWGG 2 cut(s) 342, 1194
EcoT22I ATGCAT 1 cut(s) 688
EcoT38I GRGCYC 4 cut(s) 494, 650, 699, 1252
ErhI CCWWGG 2 cut(s) 342, 1194
Esp3I CGTCTC 1 cut(s) 1207
FalI AAGNNNNNCTT 2 cut(s) 712, 744
FaqI GGGAC 2 cut(s) 367, 548
FauI CCCGC 1 cut(s) 521
Fnu4HI GCNGC 3 cut(s) 24, 132, 865
FokI GGATG 5 cut(s) 359, 388, 427, 439, 451
FriOI GRGCYC 4 cut(s) 494, 650, 699, 1252
Fsp4HI GCNGC 3 cut(s) 24, 132, 865
FspBI CTAG 3 cut(s) 27, 642, 1272
GlaI GCGC 2 cut(s) 261, 1243
GluI GCNGC 3 cut(s) 24, 132, 865
GsaI CCCAGC 1 cut(s) 983
GsuI CTGGAG 1 cut(s) 507
HaeII RGCGCY 1 cut(s) 1245
HaeIII GGCC 5 cut(s) 511, 558, 616, 704, 1295
HapII CCGG 5 cut(s) 118, 291, 301, 1087, 1140
HhaI GCGC 2 cut(s) 262, 1244
Hin6I GCGC 2 cut(s) 260, 1242
HinP1I GCGC 2 cut(s) 260, 1242
HindIII AAGCTT 1 cut(s) 836
HpaII CCGG 5 cut(s) 118, 291, 301, 1087, 1140
HphI GGTGA 6 cut(s) 81, 467, 570, 789, 857, 1118
Hpy166II GTNNAC 2 cut(s) 233, 920
Hpy188III TCNNGA 5 cut(s) 301, 330, 356, 758, 1100
Hpy8I GTNNAC 2 cut(s) 233, 920
HpyAV CCTTC 2 cut(s) 441, 1054
HpyCH4III ACNGT 2 cut(s) 40, 391
HpyCH4V TGCA 4 cut(s) 70, 350, 686, 881
HpyF10VI GCNNNNNNNGC 5 cut(s) 541, 1043, 1134, 1188, 1239
HpyF3I CTNAG 3 cut(s) 219, 279, 1161
HspAI GCGC 2 cut(s) 260, 1242
Kpn2I TCCGGA 1 cut(s) 300
Kzo9I GATC 9 cut(s) 185, 316, 773, 1014, 1076, 1096, 1123, 1156, 1169
LmnI GCTCC 6 cut(s) 99, 627, 653, 861, 1196, 1238
Lsp1109I GCAGC 3 cut(s) 10, 143, 876
LweI GCATC 3 cut(s) 79, 337, 461
MaeI CTAG 3 cut(s) 27, 642, 1272
MaeIII GTNAC 3 cut(s) 40, 473, 576
MalI GATC 9 cut(s) 187, 318, 775, 1016, 1078, 1098, 1125, 1158, 1171
MboI GATC 9 cut(s) 185, 316, 773, 1014, 1076, 1096, 1123, 1156, 1169
MboII GAAGA 8 cut(s) 149, 261, 261, 389, 614, 654, 846, 1279
MflI RGATCY 5 cut(s) 773, 1014, 1096, 1156, 1169
MhlI GDGCHC 4 cut(s) 494, 650, 699, 1252
MlsI TGGCCA 1 cut(s) 704
MluCI AATT 6 cut(s) 63, 197, 413, 594, 912, 963
MluNI TGGCCA 1 cut(s) 704
MlyI GAGTC 7 cut(s) 212, 298, 380, 389, 481, 570, 749
Mox20I TGGCCA 1 cut(s) 704
Mph1103I ATGCAT 1 cut(s) 688
MroI TCCGGA 1 cut(s) 300
MroXI GAANNNNTTC 3 cut(s) 243, 337, 1283
MscI TGGCCA 1 cut(s) 704
MseI TTAA 5 cut(s) 195, 539, 753, 911, 966
MslI CAYNNNNRTG 1 cut(s) 505
Msp20I TGGCCA 1 cut(s) 704
MspA1I CMGCKG 2 cut(s) 134, 516
MspI CCGG 5 cut(s) 118, 291, 301, 1087, 1140
MspR9I CCNGG 5 cut(s) 119, 292, 525, 567, 1088
Mva1269I GAATGC 1 cut(s) 688
MvaI CCWGG 2 cut(s) 525, 567
MwoI GCNNNNNNNGC 5 cut(s) 541, 1043, 1134, 1188, 1239
NciI CCSGG 3 cut(s) 119, 292, 1088
NcoI CCATGG 1 cut(s) 342
NdeII GATC 9 cut(s) 185, 316, 773, 1014, 1076, 1096, 1123, 1156, 1169
NlaIV GGNNCC 7 cut(s) 512, 649, 1085, 1158, 1171, 1192, 1234
NmeAIII GCCGAG 2 cut(s) 584, 961
NmuCI GTSAC 2 cut(s) 473, 576
NsiI ATGCAT 1 cut(s) 688
NspI RCATGY 4 cut(s) 213, 299, 822, 926
NspV TTCGAA 1 cut(s) 247
PaeR7I CTCGAG 1 cut(s) 1245
PaqCI CACCTGC 1 cut(s) 486
PceI AGGCCT 1 cut(s) 616
PciI ACATGT 2 cut(s) 818, 922
PctI GAATGC 1 cut(s) 688
PdmI GAANNNNTTC 3 cut(s) 243, 337, 1283
PfeI GAWTC 4 cut(s) 635, 809, 1109, 1261
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 3 cut(s) 25, 133, 866
PleI GAGTC 7 cut(s) 211, 298, 379, 388, 480, 569, 748
PpsI GAGTC 7 cut(s) 211, 298, 379, 388, 480, 569, 748
PscI ACATGT 2 cut(s) 818, 922
Psp124BI GAGCTC 2 cut(s) 494, 699
Psp6I CCWGG 2 cut(s) 523, 565
PspFI CCCAGC 1 cut(s) 979
PspGI CCWGG 2 cut(s) 523, 565
PspN4I GGNNCC 7 cut(s) 512, 649, 1085, 1158, 1171, 1192, 1234
PspPI GGNCC 2 cut(s) 510, 1293
PspXI VCTCGAGB 1 cut(s) 1245
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 5 cut(s) 773, 1014, 1096, 1156, 1169
PvuII CAGCTG 1 cut(s) 134
RsaI GTAC 2 cut(s) 86, 997
RsaNI GTAC 2 cut(s) 85, 996
RseI CAYNNNNRTG 1 cut(s) 505
SacI GAGCTC 2 cut(s) 494, 699
SaqAI TTAA 5 cut(s) 195, 539, 753, 911, 966
SatI GCNGC 3 cut(s) 24, 132, 865
Sau3AI GATC 9 cut(s) 185, 316, 773, 1014, 1076, 1096, 1123, 1156, 1169
Sau96I GGNCC 2 cut(s) 510, 1293
SchI GAGTC 7 cut(s) 212, 298, 380, 389, 481, 570, 749
ScrFI CCNGG 5 cut(s) 119, 292, 525, 567, 1088
SduI GDGCHC 4 cut(s) 494, 650, 699, 1252
SfaNI GCATC 3 cut(s) 79, 337, 461
Sfr274I CTCGAG 1 cut(s) 1245
SfuI TTCGAA 1 cut(s) 247
SlaI CTCGAG 1 cut(s) 1245
SmiMI CAYNNNNRTG 1 cut(s) 505
SmlI CTYRAG 2 cut(s) 356, 1245
SmoI CTYRAG 2 cut(s) 356, 1245
Sse9I AATT 6 cut(s) 63, 197, 413, 594, 912, 963
SseBI AGGCCT 1 cut(s) 616
SsiI CCGC 2 cut(s) 82, 514
SspI AATATT 1 cut(s) 337
SspMI CTAG 3 cut(s) 27, 642, 1272
SstI GAGCTC 2 cut(s) 494, 699
StuI AGGCCT 1 cut(s) 616
StyD4I CCNGG 5 cut(s) 117, 290, 523, 565, 1086
StyI CCWWGG 2 cut(s) 342, 1194
TaaI ACNGT 2 cut(s) 40, 391
TaqI TCGA 3 cut(s) 247, 1079, 1246
TasI AATT 6 cut(s) 63, 197, 413, 594, 912, 963
TatI WGTACW 1 cut(s) 995
TfiI GAWTC 4 cut(s) 635, 809, 1109, 1261
Tru1I TTAA 5 cut(s) 195, 539, 753, 911, 966
Tru9I TTAA 5 cut(s) 195, 539, 753, 911, 966
TscAI CASTG 1 cut(s) 240
TseFI GTSAC 2 cut(s) 473, 576
TseI GCWGC 3 cut(s) 23, 131, 864
Tsp45I GTSAC 2 cut(s) 473, 576
TspDTI ATGAA 6 cut(s) 384, 429, 648, 695, 846, 1199
TspRI CASTG 1 cut(s) 240
XapI RAATTY 1 cut(s) 197
XceI RCATGY 4 cut(s) 213, 299, 822, 926
XhoI CTCGAG 1 cut(s) 1245
XmnI GAANNNNTTC 3 cut(s) 243, 337, 1283
XspI CTAG 3 cut(s) 27, 642, 1272
Zsp2I ATGCAT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.