Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006872

Physical Location & Seq

Genomic Coordinates Reverse (-)

6839344 .. 6842694

Gene Structure 3351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1818 bp

ATGGAAGAAAAACGACGTGACGCCGCCGGAACTCAGCCGGCTTCAAATGCCGACTCTCCGGCCGCCGAGCCGTCTTCTACTCGGCGCCGCGGCGGAGCACAAAAGCGAAAGGCAAGCAGTCTCGGCGGCTCAACCTCTTCATCCACGCCGTCCAAACGTTTCGCTCGCGAGAAGCCTTTGCTTTCTCACACTCCGATCCACAACGGCCCGTTGACCCGGGCCCGTCAGGGCCCTAGCAGCCTCGCTTCGGCTTCGGCTTCAGCAGCTGGGGGTGCTGTGAAGCCGGCGGCGCAAGCCAAGCGGCCTGACCCGGTGGGGGAGGCTGTGGCTGAGCTGGTGAAACGGGAGAGCGAGTTGGAGGCTCTGGAGGCTTCTATGGAGGCTGAGTTTGAAGCCATTAGATCTCGCGGTGCCAATGCTCATGTTGTTCCTAGTCATTGCGGTTGGTTTTCATGGACAAAGGTTCACTCCATTGAGGAGCAAATGTTGGCGTCTTTCTTTAATGGGAAGTCTGAGACTCGGACTCCTGATGTATACTTGGAGATACGTAATTGCATCATGAAGAAATTCCATGCAAATCCGGGCACATTTATTGAATTAAAGGACTTGTTGGAGCTTGAAGTTGGAGAATTTGATGCTAGACAAGAAGTACTGGAATTTTTGGACCACTGGGGTTTGATTAATTTCCACCCATTCCCACCAACATGTTCTGCTGTGGCCAGTGCCAGTAGTGATGGGGTGGCGGAAAAGGATTCTTTGGTTGATAAGTTGTATCACTTTGAAGAATTACAATCACGTTCATCAGTTGTTCCCAAGACTAATATAACAACCCCAACATTGCCATCTGGGTTGTTTCCCGAGTCTGCAATTGCTGAAGAGTTGGTGTGGCCTGAGGGGCCATCTGTTGAGTACCATTGCAACTCTTGTTCAGCTGATTGCTCACGTAAGCGATACCATTGCCAGAAGCAGGCAGATTTTGATCTATGCACTGATAGCTTTAATAATGGGAAATTCGACTCTGGCATGTCTTCATCAGATTTCATTCTTATGGAGCCTGCTGAAGCTCCTGGGGTTAGTGGTGGGAACTGGACAGATCAGGAGACTCTCCTTCTCCTTGAAGCATTAGAACTTTATAAAGAAAACTGGAATGAGATTGCTGAACATGTTGCAACAAAAACAAAAGCTCAATGTATACTGCACTTTGTTCAAATGCCAATTGAGGACACTTTTCTTGATTATGAGGATGGTTTGGAGGGTAGTGCCAAAGAGACTGCAGATCCAACTTCAACTGGAAATGATTTATCGGCCCCCAAAGATGCCCCTGAAACAACAGAGAATAAGACTGCTGTTAATGAGAGTGACCCCCAAACTTCCCCGATGGAAACTTCAAAACAAGGGACTGAAGTAAACGTTGGAGAGGATACTTCAAAGCCAGAAGATTTGAATGAAGTCAAAGATGGTGAGGAAACTTCAAAATTGGAAGATACCTGTGAATTGAAAGTTGATCAGGAAACAGATGAGAACTTTGCACTGAAGGCGCTTAAAGAAGCATTCGAAGTTGTTGGTTATCCTCCAATGTCTGAAGGCCACCTTTCATTTACAGAAGTGGGCAACCCTGCCATGGCATTGGCAGCATTCTTAGCACGTTTGGTGGGACCTGATGCTGCTATTGCTTCAGCACATAATTCTTTGAAATCAATATCTGCCAGTTCTCCTGGAACTGAGCTGGCTGCAAGGCATTGCTTTATTTTGGAAGATCCACCGAATGACAGTAAGGAACAGGCTGGTCCTGATAGGGAATTGCAGTGTTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SWIRM SWIRM-assoc_1 ZZ

Protein Analysis

606

Amino Acids

65.58

Weight (kDa)

4.76

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	151 - 229	4.4e-20	SWIRM domain
ZZ	PF00569	303 - 337	6.9e-07	Zinc finger, ZZ type
Myb_DNA-binding	PF00249	361 - 403	3.1e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	363 - 403	7.1e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34430 AT4G34430 AT4G34430 AT4G34430
fragaria_vesca	FvH4_2g08620 FvH4_2g08620
malus_domestica	MD05G1067900.v1.1 MD10G1077800.v1.1
prunus_persica	Prupe.8G098500_v2.0.a1
pyrus_communis	pycom05g05880 pycom10g06070
rosa_chinensis	RchiOBHm_Chr6g0263951
rosa_laevigata	RLG00000014300
rosa_multiflora	Rmu_co8374983.1_g000001 Rmu_sc0002112.1_g000023 Rmu_sc0034069.1_g000004
rosa_roxburghii	Rroxscaffold_176G00431340 Rroxscaffold_7G00203710
rosa_rugosa	Rorug06G0007000 Rorug06G0007000 Rorug06G0007000
rosa_samantha	Rh6AG127900 Rh6BG123700 Rh6CG122400 Rh6DG109600
rosa_wichuraiana	Rw6G011040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1134
AccB1I	GGYRCC	2 cut(s)	84, 410
AccI	GTMKAC	2 cut(s)	534, 1192
AccII	CGCG	3 cut(s)	90, 168, 408
AclI	AACGTT	2 cut(s)	157, 1410
AclWI	GGATC	3 cut(s)	190, 1271, 1751
AcoI	YGGCCR	2 cut(s)	60, 717
AcsI	RAATTY	4 cut(s)	566, 629, 656, 1010
AcuI	CTGAAG	7 cut(s)	243, 894, 1080, 1422, 1553, 1602, 1659
AcyI	GRCGYC	3 cut(s)	21, 85, 491
AfaI	GTAC	2 cut(s)	651, 911
AfiI	CCNNNNNNNGG	4 cut(s)	247, 316, 967, 1621
AflIII	ACRYGT	2 cut(s)	704, 1162
AjiI	CACGTC	1 cut(s)	17
AjnI	CCWGG	2 cut(s)	1066, 1714
AjuI	GAANNNNNNNTTGG	2 cut(s)	1395, 1427
AluBI	AGCT	8 cut(s)	266, 334, 616, 932, 996, 1064, 1184, 1726
AluI	AGCT	8 cut(s)	266, 334, 616, 932, 996, 1064, 1184, 1726
Alw21I	GWGCWC	1 cut(s)	100
Alw26I	GTCTC	4 cut(s)	125, 509, 1094, 1262
AlwI	GGATC	3 cut(s)	190, 1271, 1751
AlwNI	CAGNNNCTG	1 cut(s)	266
Ama87I	CYCGRG	2 cut(s)	216, 857
ApaI	GGGCCC	2 cut(s)	223, 233
ApeKI	GCWGC	5 cut(s)	237, 263, 1631, 1664, 1730
ApoI	RAATTY	4 cut(s)	566, 629, 656, 1010
AseI	ATTAAT	1 cut(s)	681
Asp700I	GAANNNNTTC	1 cut(s)	566
AspLEI	GCGC	3 cut(s)	87, 292, 1540
AsuC2I	CCSGG	4 cut(s)	217, 218, 311, 582
AsuHPI	GGTGA	2 cut(s)	349, 1472
AsuII	TTCGAA	1 cut(s)	1554
AvaI	CYCGRG	2 cut(s)	216, 857
AvaII	GGWCC	3 cut(s)	664, 1655, 1787
AxyI	CCTNAGG	1 cut(s)	891
BaeGI	GKGCMC	3 cut(s)	223, 233, 587
BalI	TGGCCA	1 cut(s)	719
BanI	GGYRCC	2 cut(s)	84, 410
BanII	GRGCYC	2 cut(s)	223, 233
BbsI	GAAGAC	2 cut(s)	66, 1020
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	5 cut(s)	249, 275, 1643, 1651, 1717
BccI	CCATC	6 cut(s)	728, 850, 907, 1238, 1372, 1451
BceAI	ACGGC	3 cut(s)	55, 133, 220
BcgI	CGANNNNNNTGC	2 cut(s)	939, 973
BciT130I	CCWGG	2 cut(s)	1068, 1716
BciVI	GTATCC	1 cut(s)	1414
BclI	TGATCA	1 cut(s)	1504
BcnI	CCSGG	4 cut(s)	217, 218, 311, 582
BcoDI	GTCTC	4 cut(s)	125, 509, 1094, 1262
BfaI	CTAG	3 cut(s)	234, 432, 639
BfmI	CTRYAG	1 cut(s)	1272
BfoI	RGCGCY	2 cut(s)	88, 1541
BfuI	GTATCC	1 cut(s)	1414
BglI	GCCNNNNNGGC	1 cut(s)	895
BglII	AGATCT	1 cut(s)	401
BlpI	GCTNAGC	1 cut(s)	330
BmcAI	AGTACT	1 cut(s)	651
Bme1390I	CCNGG	6 cut(s)	217, 218, 311, 582, 1068, 1716
Bme18I	GGWCC	3 cut(s)	664, 1655, 1787
BmeT110I	CYCGRG	2 cut(s)	216, 857
BmgBI	CACGTC	1 cut(s)	17
BmiI	GGNNCC	8 cut(s)	86, 221, 231, 412, 897, 1053, 1308, 1656
BmrFI	CCNGG	6 cut(s)	217, 218, 311, 582, 1068, 1716
BmrI	ACTGGG	1 cut(s)	679
BmsI	GCATC	4 cut(s)	564, 625, 1306, 1651
BmuI	ACTGGG	1 cut(s)	679
BpiI	GAAGAC	2 cut(s)	66, 1020
BpmI	CTGGAG	1 cut(s)	386
Bpu1102I	GCTNAGC	1 cut(s)	330
Bpu14I	TTCGAA	1 cut(s)	1554
BpuMI	CCSGG	4 cut(s)	217, 218, 311, 582
BsaAI	YACGTR	2 cut(s)	548, 944
BsaBI	GATNNNNATC	1 cut(s)	978
BsaHI	GRCGYC	3 cut(s)	21, 85, 491
BsaJI	CCNNGG	4 cut(s)	88, 216, 1067, 1620
BsaXI	ACNNNNNCTCC	8 cut(s)	338, 368, 371, 401, 470, 500, 508, 538
Bsc4I	CCNNNNNNNGG	4 cut(s)	247, 316, 967, 1621
Bse118I	RCCGGY	2 cut(s)	37, 283
Bse1I	ACTGG	8 cut(s)	657, 674, 720, 726, 1091, 1148, 1294, 1707
Bse21I	CCTNAGG	1 cut(s)	891
Bse3DI	GCAATG	5 cut(s)	436, 836, 913, 955, 1738
Bse8I	GATNNNNATC	1 cut(s)	978
BseBI	CCWGG	2 cut(s)	1068, 1716
BseDI	CCNNGG	4 cut(s)	88, 216, 1067, 1620
BseGI	GGATG	2 cut(s)	140, 1249
BseJI	GATNNNNATC	1 cut(s)	978
BseLI	CCNNNNNNNGG	4 cut(s)	247, 316, 967, 1621
BseMI	GCAATG	5 cut(s)	436, 836, 913, 955, 1738
BseMII	CTCAG	6 cut(s)	47, 321, 375, 504, 882, 1713
BseNI	ACTGG	8 cut(s)	657, 674, 720, 726, 1091, 1148, 1294, 1707
BseRI	GAGGAG	1 cut(s)	491
BseSI	GKGCMC	3 cut(s)	223, 233, 587
BseX3I	CGGCCG	1 cut(s)	60
BseXI	GCAGC	5 cut(s)	249, 275, 1643, 1651, 1717
BseYI	CCCAGC	1 cut(s)	266
BsgI	GTGCAG	1 cut(s)	1181
Bsh1236I	CGCG	3 cut(s)	90, 168, 408
Bsh1285I	CGRYCG	1 cut(s)	63
BshNI	GGYRCC	2 cut(s)	84, 410
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	100
BsiHKCI	CYCGRG	2 cut(s)	216, 857
BsiSI	CCGG	7 cut(s)	27, 38, 59, 217, 284, 311, 581
BslFI	GGGAC	2 cut(s)	1411, 1668
BslI	CCNNNNNNNGG	4 cut(s)	247, 316, 967, 1621
BsmAI	GTCTC	4 cut(s)	125, 509, 1094, 1262
BsmFI	GGGAC	2 cut(s)	1411, 1668
BsmI	GAATGC	2 cut(s)	1550, 1634
BsoBI	CYCGRG	2 cut(s)	216, 857
Bsp119I	TTCGAA	1 cut(s)	1554
Bsp120I	GGGCCC	2 cut(s)	219, 229
Bsp1286I	GDGCHC	4 cut(s)	100, 223, 233, 587
Bsp143I	GATC	7 cut(s)	195, 401, 979, 1093, 1276, 1504, 1756
Bsp1720I	GCTNAGC	1 cut(s)	330
Bsp19I	CCATGG	1 cut(s)	1620
Bsp68I	TCGCGA	1 cut(s)	168
BspCNI	CTCAG	6 cut(s)	46, 322, 376, 505, 883, 1714
BspFNI	CGCG	3 cut(s)	90, 168, 408
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	8 cut(s)	86, 221, 231, 412, 897, 1053, 1308, 1656
BspMAI	CTGCAG	1 cut(s)	1276
BspPI	GGATC	3 cut(s)	190, 1271, 1751
BspT104I	TTCGAA	1 cut(s)	1554
BspT107I	GGYRCC	2 cut(s)	84, 410
BsrDI	GCAATG	5 cut(s)	436, 836, 913, 955, 1738
BsrFI	RCCGGY	2 cut(s)	37, 283
BsrI	ACTGG	8 cut(s)	657, 674, 720, 726, 1091, 1148, 1294, 1707
BssAI	RCCGGY	2 cut(s)	37, 283
BssECI	CCNNGG	4 cut(s)	88, 216, 1067, 1620
BssMI	GATC	7 cut(s)	195, 401, 979, 1093, 1276, 1504, 1756
BssNAI	GTATAC	2 cut(s)	535, 1193
BssNI	GRCGYC	3 cut(s)	21, 85, 491
BssT1I	CCWWGG	1 cut(s)	1620
Bst1107I	GTATAC	2 cut(s)	535, 1193
Bst2UI	CCWGG	2 cut(s)	1068, 1716
Bst4CI	ACNGT	1 cut(s)	1772
Bst6I	CTCTTC	2 cut(s)	142, 870
BstACI	GRCGYC	3 cut(s)	21, 85, 491
BstBAI	YACGTR	2 cut(s)	548, 944
BstBI	TTCGAA	1 cut(s)	1554
BstC8I	GCNNGC	8 cut(s)	39, 115, 166, 285, 294, 969, 1056, 1728
BstDEI	CTNAG	7 cut(s)	33, 330, 384, 513, 891, 1639, 1722
BstDSI	CCRYGG	2 cut(s)	88, 1620
BstF5I	GGATG	2 cut(s)	140, 1249
BstFNI	CGCG	3 cut(s)	90, 168, 408
BstH2I	RGCGCY	2 cut(s)	88, 1541
BstHHI	GCGC	3 cut(s)	87, 292, 1540
BstKTI	GATC	7 cut(s)	198, 404, 982, 1096, 1279, 1507, 1759
BstMAI	GTCTC	4 cut(s)	125, 509, 1094, 1262
BstMBI	GATC	7 cut(s)	195, 401, 979, 1093, 1276, 1504, 1756
BstMCI	CGRYCG	1 cut(s)	63
BstNI	CCWGG	2 cut(s)	1068, 1716
BstNSI	RCATGY	3 cut(s)	708, 1027, 1166
BstSCI	CCNGG	6 cut(s)	215, 216, 309, 580, 1066, 1714
BstSFI	CTRYAG	1 cut(s)	1272
BstSLI	GKGCMC	3 cut(s)	223, 233, 587
BstSNI	TACGTA	1 cut(s)	548
BstUI	CGCG	3 cut(s)	90, 168, 408
BstV1I	GCAGC	5 cut(s)	249, 275, 1643, 1651, 1717
BstV2I	GAAGAC	2 cut(s)	66, 1020
BstX2I	RGATCY	3 cut(s)	401, 1276, 1756
BstXI	CCANNNNNNTGG	1 cut(s)	1627
BstYI	RGATCY	3 cut(s)	401, 1276, 1756
BstZ17I	GTATAC	2 cut(s)	535, 1193
BstZI	CGGCCG	1 cut(s)	60
Bsu36I	CCTNAGG	1 cut(s)	891
BsuI	GTATCC	1 cut(s)	1414
BtgI	CCRYGG	2 cut(s)	88, 1620
BtrI	CACGTC	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	140, 1249
BtsI	GCAGTG	1 cut(s)	1811
BtsIMutI	CAGTG	5 cut(s)	667, 727, 987, 1529, 1811
BtuMI	TCGCGA	1 cut(s)	168
Cac8I	GCNNGC	8 cut(s)	39, 115, 166, 285, 294, 969, 1056, 1728
CaiI	CAGNNNCTG	1 cut(s)	266
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	3 cut(s)	87, 292, 1540
Cfr10I	RCCGGY	2 cut(s)	37, 283
Cfr42I	CCGCGG	1 cut(s)	91
Cfr9I	CCCGGG	1 cut(s)	216
CseI	GACGC	2 cut(s)	29, 480
Csp6I	GTAC	2 cut(s)	650, 910
CviAII	CATG	8 cut(s)	422, 453, 559, 572, 705, 1024, 1163, 1621
CviQI	GTAC	2 cut(s)	650, 910
DdeI	CTNAG	7 cut(s)	33, 330, 384, 513, 891, 1639, 1722
DinI	GGCGCC	1 cut(s)	86
DpnI	GATC	7 cut(s)	197, 403, 981, 1095, 1278, 1506, 1758
DpnII	GATC	7 cut(s)	195, 401, 979, 1093, 1276, 1504, 1756
EaeI	YGGCCR	2 cut(s)	60, 717
EagI	CGGCCG	1 cut(s)	60
Eam1104I	CTCTTC	2 cut(s)	142, 870
EarI	CTCTTC	2 cut(s)	142, 870
EciI	GGCGGA	2 cut(s)	108, 758
EclXI	CGGCCG	1 cut(s)	60
Eco105I	TACGTA	1 cut(s)	548
Eco130I	CCWWGG	1 cut(s)	1620
Eco24I	GRGCYC	2 cut(s)	223, 233
Eco47I	GGWCC	3 cut(s)	664, 1655, 1787
Eco52I	CGGCCG	1 cut(s)	60
Eco57I	CTGAAG	7 cut(s)	243, 894, 1080, 1422, 1553, 1602, 1659
Eco81I	CCTNAGG	1 cut(s)	891
Eco88I	CYCGRG	2 cut(s)	216, 857
EcoO109I	RGGNCCY	3 cut(s)	229, 230, 1655
EcoRII	CCWGG	2 cut(s)	1066, 1714
EcoT14I	CCWWGG	1 cut(s)	1620
EcoT38I	GRGCYC	2 cut(s)	223, 233
EgeI	GGCGCC	1 cut(s)	86
EheI	GGCGCC	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	1620
FaeI	CATG	8 cut(s)	425, 456, 562, 575, 708, 1027, 1166, 1624
FalI	AAGNNNNNCTT	2 cut(s)	1575, 1607
FaqI	GGGAC	2 cut(s)	1411, 1668
FatI	CATG	8 cut(s)	421, 452, 558, 571, 704, 1023, 1162, 1620
FbaI	TGATCA	1 cut(s)	1504
FblI	GTMKAC	2 cut(s)	534, 1192
FokI	GGATG	2 cut(s)	127, 1256
FriOI	GRGCYC	2 cut(s)	223, 233
FspBI	CTAG	3 cut(s)	234, 432, 639
GlaI	GCGC	3 cut(s)	86, 291, 1539
GsaI	CCCAGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	386
HaeII	RGCGCY	2 cut(s)	88, 1541
HapII	CCGG	7 cut(s)	27, 38, 59, 217, 284, 311, 581
HgaI	GACGC	2 cut(s)	29, 480
HhaI	GCGC	3 cut(s)	87, 292, 1540
Hin1I	GRCGYC	3 cut(s)	21, 85, 491
Hin1II	CATG	8 cut(s)	425, 456, 562, 575, 708, 1027, 1166, 1624
Hin6I	GCGC	3 cut(s)	85, 290, 1538
HinP1I	GCGC	3 cut(s)	85, 290, 1538
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	7 cut(s)	53, 517, 523, 752, 860, 1016, 1102
HpaII	CCGG	7 cut(s)	27, 38, 59, 217, 284, 311, 581
HphI	GGTGA	2 cut(s)	349, 1472
Hpy166II	GTNNAC	5 cut(s)	213, 466, 535, 1193, 1408
Hpy188I	TCNGA	5 cut(s)	195, 514, 522, 1036, 1582
Hpy188III	TCNNGA	9 cut(s)	167, 365, 527, 559, 857, 1097, 1232, 1508, 1790
Hpy8I	GTNNAC	5 cut(s)	213, 466, 535, 1193, 1408
Hpy99I	CGWCG	1 cut(s)	18
HpyAV	CCTTC	3 cut(s)	1118, 1528, 1577
HpyCH4III	ACNGT	1 cut(s)	1772
HpyCH4IV	ACGT	7 cut(s)	16, 157, 547, 796, 943, 1410, 1645
HpyF3I	CTNAG	7 cut(s)	33, 330, 384, 513, 891, 1639, 1722
HpySE526I	ACGT	7 cut(s)	16, 157, 547, 796, 943, 1410, 1645
Hsp92I	GRCGYC	3 cut(s)	21, 85, 491
Hsp92II	CATG	8 cut(s)	425, 456, 562, 575, 708, 1027, 1166, 1624
HspAI	GCGC	3 cut(s)	85, 290, 1538
KasI	GGCGCC	1 cut(s)	84
KroI	GCCGGC	2 cut(s)	37, 283
KroNI	GCCGGC	2 cut(s)	39, 285
Ksp22I	TGATCA	1 cut(s)	1504
KspI	CCGCGG	1 cut(s)	91
Kzo9I	GATC	7 cut(s)	195, 401, 979, 1093, 1276, 1504, 1756
LmnI	GCTCC	5 cut(s)	95, 478, 613, 1051, 1069
Lsp1109I	GCAGC	5 cut(s)	249, 275, 1643, 1651, 1717
LweI	GCATC	4 cut(s)	564, 625, 1306, 1651
MaeI	CTAG	3 cut(s)	234, 432, 639
MaeII	ACGT	7 cut(s)	16, 157, 547, 796, 943, 1410, 1645
MaeIII	GTNAC	2 cut(s)	17, 1358
MalI	GATC	7 cut(s)	197, 403, 981, 1095, 1278, 1506, 1758
MboI	GATC	7 cut(s)	195, 401, 979, 1093, 1276, 1504, 1756
MfeI	CAATTG	2 cut(s)	867, 1215
MflI	RGATCY	3 cut(s)	401, 1276, 1756
MhlI	GDGCHC	4 cut(s)	100, 223, 233, 587
MlsI	TGGCCA	1 cut(s)	719
MluNI	TGGCCA	1 cut(s)	719
Mly113I	GGCGCC	1 cut(s)	85
MlyI	GAGTC	6 cut(s)	47, 511, 517, 869, 1010, 1096
MmeI	TCCRAC	5 cut(s)	336, 591, 604, 1304, 1393
Mox20I	TGGCCA	1 cut(s)	719
MroNI	GCCGGC	2 cut(s)	37, 283
MroXI	GAANNNNTTC	1 cut(s)	566
MscI	TGGCCA	1 cut(s)	719
MseI	TTAA	6 cut(s)	501, 599, 681, 999, 1350, 1542
MslI	CAYNNNNRTG	2 cut(s)	703, 1046
Msp20I	TGGCCA	1 cut(s)	719
MspA1I	CMGCKG	3 cut(s)	90, 266, 932
MspI	CCGG	7 cut(s)	27, 38, 59, 217, 284, 311, 581
MspR9I	CCNGG	6 cut(s)	217, 218, 311, 582, 1068, 1716
MunI	CAATTG	2 cut(s)	867, 1215
Mva1269I	GAATGC	2 cut(s)	1550, 1634
MvaI	CCWGG	2 cut(s)	1068, 1716
MvnI	CGCG	3 cut(s)	90, 168, 408
NaeI	GCCGGC	2 cut(s)	39, 285
NarI	GGCGCC	1 cut(s)	85
NciI	CCSGG	4 cut(s)	217, 218, 311, 582
NcoI	CCATGG	1 cut(s)	1620
NdeII	GATC	7 cut(s)	195, 401, 979, 1093, 1276, 1504, 1756
NgoMIV	GCCGGC	2 cut(s)	37, 283
NlaIII	CATG	8 cut(s)	425, 456, 562, 575, 708, 1027, 1166, 1624
NlaIV	GGNNCC	8 cut(s)	86, 221, 231, 412, 897, 1053, 1308, 1656
NmeAIII	GCCGAG	3 cut(s)	61, 91, 102
NmuCI	GTSAC	2 cut(s)	17, 1358
NruI	TCGCGA	1 cut(s)	168
NspI	RCATGY	3 cut(s)	708, 1027, 1166
NspV	TTCGAA	1 cut(s)	1554
PagI	TCATGA	1 cut(s)	558
PciI	ACATGT	2 cut(s)	704, 1162
PctI	GAATGC	2 cut(s)	1550, 1634
PdiI	GCCGGC	2 cut(s)	39, 285
PdmI	GAANNNNTTC	1 cut(s)	566
PfeI	GAWTC	1 cut(s)	752
PfoI	TCCNGGA	1 cut(s)	1714
PleI	GAGTC	6 cut(s)	47, 511, 517, 868, 1010, 1096
PluTI	GGCGCC	1 cut(s)	88
PpsI	GAGTC	6 cut(s)	47, 511, 517, 868, 1010, 1096
Ppu21I	YACGTR	2 cut(s)	548, 944
PpuMI	RGGWCCY	1 cut(s)	1655
PscI	ACATGT	2 cut(s)	704, 1162
PshBI	ATTAAT	1 cut(s)	681
PsiI	TTATAA	1 cut(s)	1134
Psp1406I	AACGTT	2 cut(s)	157, 1410
Psp5II	RGGWCCY	1 cut(s)	1655
Psp6I	CCWGG	2 cut(s)	1066, 1714
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	2 cut(s)	1066, 1714
PspN4I	GGNNCC	8 cut(s)	86, 221, 231, 412, 897, 1053, 1308, 1656
PspOMI	GGGCCC	2 cut(s)	219, 229
PspPPI	RGGWCCY	1 cut(s)	1655
PstI	CTGCAG	1 cut(s)	1276
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	3 cut(s)	401, 1276, 1756
PvuII	CAGCTG	2 cut(s)	266, 932
RruI	TCGCGA	1 cut(s)	168
RsaI	GTAC	2 cut(s)	651, 911
RsaNI	GTAC	2 cut(s)	650, 910
RseI	CAYNNNNRTG	2 cut(s)	703, 1046
SacII	CCGCGG	1 cut(s)	91
SaqAI	TTAA	6 cut(s)	501, 599, 681, 999, 1350, 1542
Sau3AI	GATC	7 cut(s)	195, 401, 979, 1093, 1276, 1504, 1756
ScaI	AGTACT	1 cut(s)	651
SchI	GAGTC	6 cut(s)	47, 511, 517, 869, 1010, 1096
ScrFI	CCNGG	6 cut(s)	217, 218, 311, 582, 1068, 1716
SduI	GDGCHC	4 cut(s)	100, 223, 233, 587
SfaNI	GCATC	4 cut(s)	564, 625, 1306, 1651
SfcI	CTRYAG	1 cut(s)	1272
SfiI	GGCCNNNNNGGCC	1 cut(s)	895
SfoI	GGCGCC	1 cut(s)	86
Sfr303I	CCGCGG	1 cut(s)	91
SfuI	TTCGAA	1 cut(s)	1554
SgrBI	CCGCGG	1 cut(s)	91
SinI	GGWCC	3 cut(s)	664, 1655, 1787
SmaI	CCCGGG	1 cut(s)	218
SmiMI	CAYNNNNRTG	2 cut(s)	703, 1046
SnaBI	TACGTA	1 cut(s)	548
SspDI	GGCGCC	1 cut(s)	84
SspMI	CTAG	3 cut(s)	234, 432, 639
StyD4I	CCNGG	6 cut(s)	215, 216, 309, 580, 1066, 1714
StyI	CCWWGG	1 cut(s)	1620
TaaI	ACNGT	1 cut(s)	1772
TaiI	ACGT	7 cut(s)	19, 160, 550, 799, 946, 1413, 1648
TaqI	TCGA	2 cut(s)	1014, 1554
TatI	WGTACW	1 cut(s)	649
TauI	GCSGC	7 cut(s)	26, 65, 90, 93, 129, 290, 304
TfiI	GAWTC	1 cut(s)	752
Tru1I	TTAA	6 cut(s)	501, 599, 681, 999, 1350, 1542
Tru9I	TTAA	6 cut(s)	501, 599, 681, 999, 1350, 1542
TscAI	CASTG	5 cut(s)	674, 727, 994, 1536, 1811
TseFI	GTSAC	2 cut(s)	17, 1358
TseI	GCWGC	5 cut(s)	237, 263, 1631, 1664, 1730
Tsp45I	GTSAC	2 cut(s)	17, 1358
TspDTI	ATGAA	8 cut(s)	129, 441, 575, 789, 1020, 1030, 1461, 1584
TspMI	CCCGGG	1 cut(s)	216
TspRI	CASTG	5 cut(s)	674, 727, 994, 1536, 1811
VpaK11BI	GGWCC	3 cut(s)	664, 1655, 1787
VspI	ATTAAT	1 cut(s)	681
XapI	RAATTY	4 cut(s)	566, 629, 656, 1010
XceI	RCATGY	3 cut(s)	708, 1027, 1166
XmaI	CCCGGG	1 cut(s)	216
XmiI	GTMKAC	2 cut(s)	534, 1192
XmnI	GAANNNNTTC	1 cut(s)	566
XspI	CTAG	3 cut(s)	234, 432, 639
ZrmI	AGTACT	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.