Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008362

Physical Location & Seq

Genomic Coordinates Reverse (-)

12789648 .. 12791697

Gene Structure 2050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGTCTATTCAAATGTTGAAGTCCCCTCTCTCTTCAATCCCAGTTTCCCAGTCGAATTTTCCCGGAAAATCCAGCCGGGTTTTCTCGGAAAATCAGTCCAGGAAATGTTTAATCAGGTTGTCAGGATACAGGGGGTCTGGATATCTATTGAGAGATAGGAGGAGATTTGGGGTCTGCTGCAAAGCTCAAGAATCTGACAGCAAAAGCAATGGTGAAGAACCGCCCGAGTCGCTGTTTATGAAGGAATTAAGGAGGAGGGGTATGAATCCCACTTCTTTGCTTGAGGAAAGAGAGAGGACCGATTACGGAATGAACGATGAGATGAGGAATGAAGATAGAGGTTTCTCAGCTAGAAATGCGGTCTCAACCGAGATTGAGAAAAGCCTAGCAAATCAAAGGGAGCGGTCGATGCAATTGAACAGCGAAGGCCTCGAGGGGTTAATCCCTCGGGCCAGACTCTTGCTGACGATTGGAGGGTCGTTCTTCTTGGGGTTTTGGCCATTGATCCTCATAACTGTAGCACTCTTCTCTGCTCTCTACTTGTACTTTGGATCAACTTTTGTCCATGACGGAAGCAGTTCTCAGATATCAGCACTCCAATACATTGATCCATACGAACTTCTGGAAGATGAAAGGATTTCTCAAATAGCACCGCGTGTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

25.15

Weight (kDa)

8.79

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50020
fragaria_vesca	FvH4_2g03130 FvH4_2g03130 FvH4_2g03130 FvH4_2g03130
malus_domestica	MD05G1106900.v1.1 MD10G1111900.v1.1
prunus_persica	Prupe.8G151000_v2.0.a1 Prupe.8G151000_v2.0.a1 Prupe.8G151000_v2.0.a1
pyrus_communis	pycom05g10380 pycom10g09670
rosa_chinensis	RchiOBHm_Chr6g0248001
rosa_laevigata	RLG00000015164
rosa_multiflora	Rmu_sc0010633.1_g000009 Rmu_sc0025757.1_g000004
rosa_roxburghii	Rroxscaffold_7G00213510
rosa_rugosa	Rorug05G0530100
rosa_samantha	Rh6AG045000 Rh6BG040100 Rh6CG038500 Rh6DG035500
rosa_wichuraiana	Rw6G003910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	434
AccBSI	CCGCTC	1 cut(s)	406
AccII	CGCG	1 cut(s)	658
AciI	CCGC	4 cut(s)	224, 362, 406, 656
AclWI	GGATC	3 cut(s)	502, 562, 605
AcoI	YGGCCR	1 cut(s)	500
AcsI	RAATTY	1 cut(s)	58
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	659
AfaI	GTAC	1 cut(s)	548
AgsI	TTSAA	4 cut(s)	14, 22, 39, 421
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	2 cut(s)	188, 353
AluI	AGCT	2 cut(s)	188, 353
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	3 cut(s)	502, 562, 605
Ama87I	CYCGRG	3 cut(s)	227, 434, 450
AoxI	GGCC	3 cut(s)	430, 453, 500
ApeKI	GCWGC	1 cut(s)	180
ApoI	RAATTY	1 cut(s)	58
Asp700I	GAANNNNTTC	1 cut(s)	580
AspS9I	GGNCC	2 cut(s)	300, 453
AsuC2I	CCSGG	2 cut(s)	66, 80
AsuHPI	GGTGA	1 cut(s)	227
AvaI	CYCGRG	3 cut(s)	227, 434, 450
AvaII	GGWCC	1 cut(s)	300
BalI	TGGCCA	1 cut(s)	502
BbvI	GCAGC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	103
BciVI	GTATCC	1 cut(s)	122
BcnI	CCSGG	2 cut(s)	66, 80
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	2 cut(s)	354, 389
BfmI	CTRYAG	1 cut(s)	519
BfuI	GTATCC	1 cut(s)	122
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
Bme1390I	CCNGG	3 cut(s)	66, 80, 103
Bme18I	GGWCC	1 cut(s)	300
BmeT110I	CYCGRG	3 cut(s)	227, 434, 450
BmgT120I	GGNCC	2 cut(s)	300, 453
BmrFI	CCNGG	3 cut(s)	66, 80, 103
BmrI	ACTGGG	2 cut(s)	38, 46
BmsI	GCATC	1 cut(s)	402
BmuI	ACTGGG	2 cut(s)	38, 46
BpuEI	CTTGAG	2 cut(s)	174, 305
BpuMI	CCSGG	2 cut(s)	66, 80
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	370
BsaJI	CCNNGG	1 cut(s)	449
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bse1I	ACTGG	2 cut(s)	44, 52
Bse3DI	GCAATG	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	449
BseMI	GCAATG	1 cut(s)	217
BseMII	CTCAG	2 cut(s)	363, 599
BseNI	ACTGG	2 cut(s)	44, 52
BseRI	GAGGAG	2 cut(s)	178, 271
BseXI	GCAGC	1 cut(s)	167
Bsh1236I	CGCG	1 cut(s)	658
Bsh1285I	CGRYCG	1 cut(s)	410
BshFI	GGCC	3 cut(s)	432, 455, 502
BsiEI	CGRYCG	1 cut(s)	410
BsiHKCI	CYCGRG	3 cut(s)	227, 434, 450
BsiSI	CCGG	2 cut(s)	66, 79
BslFI	GGGAC	1 cut(s)	10
BsmAI	GTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	10
BsnI	GGCC	3 cut(s)	432, 455, 502
Bso31I	GGTCTC	1 cut(s)	370
BsoBI	CYCGRG	3 cut(s)	227, 434, 450
Bsp143I	GATC	3 cut(s)	507, 554, 610
BspACI	CCGC	4 cut(s)	224, 362, 406, 656
BspANI	GGCC	3 cut(s)	432, 455, 502
BspCNI	CTCAG	2 cut(s)	362, 598
BspFNI	CGCG	1 cut(s)	658
BspPI	GGATC	3 cut(s)	502, 562, 605
BspTNI	GGTCTC	1 cut(s)	370
BsrBI	CCGCTC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	44, 52
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	3 cut(s)	507, 554, 610
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	520
Bst6I	CTCTTC	2 cut(s)	40, 533
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	2 cut(s)	349, 585
BstFNI	CGCG	1 cut(s)	658
BstKTI	GATC	3 cut(s)	510, 557, 613
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	3 cut(s)	507, 554, 610
BstMCI	CGRYCG	1 cut(s)	410
BstMWI	GCNNNNNNNGC	3 cut(s)	232, 359, 412
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	3 cut(s)	64, 78, 101
BstSFI	CTRYAG	1 cut(s)	519
BstUI	CGCG	1 cut(s)	658
BstV1I	GCAGC	1 cut(s)	167
BsuI	GTATCC	1 cut(s)	122
BsuRI	GGCC	3 cut(s)	432, 455, 502
Cfr13I	GGNCC	2 cut(s)	300, 453
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	1 cut(s)	569
CviJI	RGCY	7 cut(s)	78, 188, 353, 387, 432, 455, 502
CviKI_1	RGCY	7 cut(s)	78, 188, 353, 387, 432, 455, 502
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	2 cut(s)	349, 585
DpnI	GATC	3 cut(s)	509, 556, 612
DpnII	GATC	3 cut(s)	507, 554, 610
DraIII	CACNNNGTG	1 cut(s)	659
EaeI	YGGCCR	1 cut(s)	500
Eam1104I	CTCTTC	2 cut(s)	40, 533
EarI	CTCTTC	2 cut(s)	40, 533
Eco147I	AGGCCT	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	370
Eco32I	GATATC	2 cut(s)	146, 591
Eco47I	GGWCC	1 cut(s)	300
Eco88I	CYCGRG	3 cut(s)	227, 434, 450
EcoRII	CCWGG	1 cut(s)	101
EcoRV	GATATC	2 cut(s)	146, 591
FaeI	CATG	1 cut(s)	572
FaiI	YATR	5 cut(s)	242, 266, 515, 570, 616
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	1 cut(s)	568
Fnu4HI	GCNGC	1 cut(s)	181
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	2 cut(s)	354, 389
GluI	GCNGC	1 cut(s)	181
HaeIII	GGCC	3 cut(s)	432, 455, 502
HapII	CCGG	2 cut(s)	66, 79
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	572
HinfI	GANTC	4 cut(s)	194, 230, 268, 459
HpaII	CCGG	2 cut(s)	66, 79
HphI	GGTGA	1 cut(s)	227
Hpy188I	TCNGA	3 cut(s)	91, 199, 588
Hpy188III	TCNNGA	4 cut(s)	126, 141, 191, 626
HpyAV	CCTTC	2 cut(s)	238, 422
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4V	TGCA	2 cut(s)	183, 415
HpyF10VI	GCNNNNNNNGC	3 cut(s)	232, 359, 412
HpyF3I	CTNAG	2 cut(s)	349, 585
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	572
Kzo9I	GATC	3 cut(s)	507, 554, 610
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	1 cut(s)	402
MaeI	CTAG	2 cut(s)	354, 389
MalI	GATC	3 cut(s)	509, 556, 612
MbiI	CCGCTC	1 cut(s)	406
MboI	GATC	3 cut(s)	507, 554, 610
MboII	GAAGA	6 cut(s)	27, 230, 347, 478, 520, 641
MfeI	CAATTG	1 cut(s)	416
MlsI	TGGCCA	1 cut(s)	502
MluCI	AATT	3 cut(s)	58, 248, 416
MluNI	TGGCCA	1 cut(s)	502
MlyI	GAGTC	2 cut(s)	239, 453
Mox20I	TGGCCA	1 cut(s)	502
MroXI	GAANNNNTTC	1 cut(s)	580
MscI	TGGCCA	1 cut(s)	502
MseI	TTAA	3 cut(s)	113, 251, 443
Msp20I	TGGCCA	1 cut(s)	502
MspI	CCGG	2 cut(s)	66, 79
MspR9I	CCNGG	3 cut(s)	66, 80, 103
MunI	CAATTG	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	1 cut(s)	658
MwoI	GCNNNNNNNGC	3 cut(s)	232, 359, 412
NciI	CCSGG	2 cut(s)	66, 80
NdeII	GATC	3 cut(s)	507, 554, 610
NlaIII	CATG	1 cut(s)	572
PaeR7I	CTCGAG	1 cut(s)	434
PceI	AGGCCT	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	580
PfeI	GAWTC	2 cut(s)	194, 268
PfoI	TCCNGGA	2 cut(s)	64, 101
PkrI	GCNGC	1 cut(s)	182
PleI	GAGTC	2 cut(s)	238, 453
PpsI	GAGTC	2 cut(s)	238, 453
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspPI	GGNCC	2 cut(s)	300, 453
PspXI	VCTCGAGB	1 cut(s)	434
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
SaqAI	TTAA	3 cut(s)	113, 251, 443
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	3 cut(s)	507, 554, 610
Sau96I	GGNCC	2 cut(s)	300, 453
SchI	GAGTC	2 cut(s)	239, 453
ScrFI	CCNGG	3 cut(s)	66, 80, 103
SetI	ASST	4 cut(s)	122, 190, 346, 355
SfaNI	GCATC	1 cut(s)	402
SfcI	CTRYAG	1 cut(s)	519
Sfr274I	CTCGAG	1 cut(s)	434
SinI	GGWCC	1 cut(s)	300
SlaI	CTCGAG	1 cut(s)	434
SmlI	CTYRAG	3 cut(s)	189, 284, 434
SmoI	CTYRAG	3 cut(s)	189, 284, 434
Sse9I	AATT	3 cut(s)	58, 248, 416
SseBI	AGGCCT	1 cut(s)	432
SsiI	CCGC	4 cut(s)	224, 362, 406, 656
SspMI	CTAG	2 cut(s)	354, 389
StuI	AGGCCT	1 cut(s)	432
StyD4I	CCNGG	3 cut(s)	64, 78, 101
TaaI	ACNGT	1 cut(s)	520
TaqI	TCGA	3 cut(s)	56, 410, 435
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	3 cut(s)	58, 248, 416
TatI	WGTACW	1 cut(s)	546
TfiI	GAWTC	2 cut(s)	194, 268
Tru1I	TTAA	3 cut(s)	113, 251, 443
Tru9I	TTAA	3 cut(s)	113, 251, 443
TseI	GCWGC	1 cut(s)	180
TspDTI	ATGAA	5 cut(s)	257, 281, 329, 348, 648
TspGWI	ACGGA	2 cut(s)	324, 588
VpaK11BI	GGWCC	1 cut(s)	300
XapI	RAATTY	1 cut(s)	58
XhoI	CTCGAG	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	580
XspI	CTAG	2 cut(s)	354, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.