Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0016313

Physical Location & Seq

Genomic Coordinates Forward (+)

13296438 .. 13296882

Gene Structure 445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAACTTCTCCACGAAGCCTCAAACCCTAACTTTAATCTCATACACAGTCTCCCCGCCCTCCGGCGGTCTCCGATCCCATTTGAAACGCAGGAGCTTCAACGGTAGACAGCGCTCTCCTCCCTCGAAGTTTCTCATCAAAGCCTCTCTGGACTCGCATTCGCTCCTCGTTGTCGTCGCCGTCATCACCTTCTCTGCTGCCTCCGTAGTCGACTTCAATCACTCCGTCAAGCCCCGGAAGAATGTTGATGTTAGGGAGAGAGAGGTTAAAGAGGGTAACGGTATAGTTCCGATTGAAGAGAAGCAGATTCTTGGCATCAATACTTTGAACGGCAAAATTGAAGAAATTGAGATGTCGGCGCTGACGCGGGTGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

126

Amino Acids

13.82

Weight (kDa)

10.15

Isoelectric Point (pI)

57.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016313)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22580
pyrus_communis	pycom10g10050
rosa_chinensis	RchiOBHm_Chr1g0360291 RchiOBHm_Chr4g0392001
rosa_laevigata	RLG00000019293
rosa_multiflora	Rmu_sc0003548.1_g000002 Rmu_sc0005230.1_g000016 Rmu_sc0010382.1_g000007
rosa_roxburghii	Rroxscaffold_1G00027230 Rroxscaffold_2G00132030 Rroxscaffold_7G00188300 Rroxscaffold_7G00194990
rosa_samantha	Rh2AG435600 Rh2CG421700 Rh4AG122200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	106, 210
AccII	CGCG	1 cut(s)	367
AciI	CCGC	3 cut(s)	56, 66, 367
AclWI	GGATC	1 cut(s)	69
AfeI	AGCGCT	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	62, 65
AgsI	TTSAA	6 cut(s)	85, 100, 217, 296, 328, 341
AluBI	AGCT	1 cut(s)	96
AluI	AGCT	1 cut(s)	96
Alw26I	GTCTC	2 cut(s)	55, 74
AlwI	GGATC	1 cut(s)	69
Aor51HI	AGCGCT	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	197
AspLEI	GCGC	2 cut(s)	114, 361
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	184
BceAI	ACGGC	2 cut(s)	164, 346
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	2 cut(s)	55, 74
BfoI	RGCGCY	2 cut(s)	115, 362
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	235
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	233
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 65
BseDI	CCNNGG	1 cut(s)	233
BseLI	CCNNNNNNNGG	2 cut(s)	62, 65
BseRI	GAGGAG	2 cut(s)	108, 155
BseXI	GCAGC	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	367
BsiSI	CCGG	2 cut(s)	63, 235
BslI	CCNNNNNNNGG	2 cut(s)	62, 65
BsmAI	GTCTC	2 cut(s)	55, 74
BsmI	GAATGC	1 cut(s)	157
Bso31I	GGTCTC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	74
BspACI	CCGC	3 cut(s)	56, 66, 367
BspFNI	CGCG	1 cut(s)	367
BspPI	GGATC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	1 cut(s)	74
Bst4CI	ACNGT	3 cut(s)	49, 104, 281
Bst6I	CTCTTC	1 cut(s)	291
BstFNI	CGCG	1 cut(s)	367
BstH2I	RGCGCY	2 cut(s)	115, 362
BstHHI	GCGC	2 cut(s)	114, 361
BstKTI	GATC	1 cut(s)	77
BstMAI	GTCTC	2 cut(s)	55, 74
BstMBI	GATC	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	233
BstUI	CGCG	1 cut(s)	367
BstV1I	GCAGC	1 cut(s)	184
CfoI	GCGC	2 cut(s)	114, 361
CseI	GACGC	1 cut(s)	373
CviJI	RGCY	4 cut(s)	19, 96, 143, 232
CviKI_1	RGCY	4 cut(s)	19, 96, 143, 232
DpnI	GATC	1 cut(s)	76
DpnII	GATC	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	74
Eco47III	AGCGCT	1 cut(s)	113
FaiI	YATR	2 cut(s)	43, 284
FauI	CCCGC	2 cut(s)	63, 360
FblI	GTMKAC	2 cut(s)	106, 210
Fnu4HI	GCNGC	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	198
GlaI	GCGC	2 cut(s)	113, 360
GluI	GCNGC	1 cut(s)	198
HaeII	RGCGCY	2 cut(s)	115, 362
HapII	CCGG	2 cut(s)	63, 235
HgaI	GACGC	1 cut(s)	373
HhaI	GCGC	2 cut(s)	114, 361
Hin6I	GCGC	2 cut(s)	112, 359
HinP1I	GCGC	2 cut(s)	112, 359
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	152, 307
HpaII	CCGG	2 cut(s)	63, 235
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	2 cut(s)	107, 211
Hpy188I	TCNGA	2 cut(s)	74, 291
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	2 cut(s)	107, 211
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	3 cut(s)	49, 104, 281
HspAI	GCGC	2 cut(s)	112, 359
Kzo9I	GATC	1 cut(s)	74
LmnI	GCTCC	2 cut(s)	93, 168
LpnPI	CCDG	4 cut(s)	76, 76, 134, 248
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	1 cut(s)	76
MboI	GATC	1 cut(s)	74
MboII	GAAGA	3 cut(s)	250, 308, 353
MluCI	AATT	2 cut(s)	336, 345
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	9 cut(s)	30, 70, 129, 133, 154, 176, 211, 256, 265
MseI	TTAA	2 cut(s)	35, 267
MspI	CCGG	2 cut(s)	63, 235
MspR9I	CCNGG	1 cut(s)	235
Mva1269I	GAATGC	1 cut(s)	157
MvnI	CGCG	1 cut(s)	367
NciI	CCSGG	1 cut(s)	235
NdeII	GATC	1 cut(s)	74
PctI	GAATGC	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
SalI	GTCGAC	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	35, 267
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	74
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	235
SetI	ASST	3 cut(s)	98, 191, 267
SfaNI	GCATC	1 cut(s)	324
Sse9I	AATT	2 cut(s)	336, 345
SsiI	CCGC	3 cut(s)	56, 66, 367
StyD4I	CCNGG	1 cut(s)	233
TaaI	ACNGT	3 cut(s)	49, 104, 281
TaqI	TCGA	2 cut(s)	125, 210
TasI	AATT	2 cut(s)	336, 345
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	2 cut(s)	35, 267
Tru9I	TTAA	2 cut(s)	35, 267
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	193, 214
XmiI	GTMKAC	2 cut(s)	106, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.