Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010382.1

Orthogroup ID

OG0016313

Physical Location & Seq

Genomic Coordinates Reverse (-)

33237 .. 37025

Gene Structure 3789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010382.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atggtctctgttccctccgccgcgacttcgtcaggtgcccccacagcctcctcccccttgtcgacggcctcaagccgctcaggaagaacaggagcctccggcacccgcggacatcagcatccgccgtcgcaattcttgattaaagcgtctctcgattctcactgtattctactgttcgtcgaggtggagacgttcttggaggtgtctgtggtgtacttcaatcagccattgaagccaaagaagatgaatcacagagaggtcttgttgactccaagtcatttagctattgtcatagaatatgcagctagtggtgagctatttgagaggatatgtagtgctggtagatttagtgaagataaggtttacaatagaggaaatgcagaagtgcttgtgggaggccaagcggtgttaaggtggaggaatgggaggagtaaagtcctaaaccatttagaacgtggataccttctggaagatttaaacaattacaagttcaaggaaaaagacactaacactcaagaagagattgatgtcgttcgagtagagtgggcagagcaggttgatagatatatccaagatgaactaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

195

Amino Acids

21.76

Weight (kDa)

6.6

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016313)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22580
pyrus_communis	pycom10g10050
rosa_chinensis	RchiOBHm_Chr1g0360291 RchiOBHm_Chr4g0392001
rosa_laevigata	RLG00000019293
rosa_multiflora	Rmu_sc0003548.1_g000002 Rmu_sc0005230.1_g000016 Rmu_sc0010382.1_g000007
rosa_roxburghii	Rroxscaffold_1G00027230 Rroxscaffold_2G00132030 Rroxscaffold_7G00188300 Rroxscaffold_7G00194990
rosa_samantha	Rh2AG435600 Rh2CG421700 Rh4AG122200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	544
AccB1I	GGYRCC	2 cut(s)	35, 101
AccBSI	CCGCTC	1 cut(s)	78
AccI	GTMKAC	1 cut(s)	62
AccII	CGCG	2 cut(s)	23, 108
AciI	CCGC	7 cut(s)	18, 21, 76, 106, 108, 122, 404
AfaI	GTAC	1 cut(s)	215
AgsI	TTSAA	3 cut(s)	220, 232, 493
AhdI	GACNNNNNGTC	1 cut(s)	273
AluBI	AGCT	3 cut(s)	284, 305, 316
AluI	AGCT	3 cut(s)	284, 305, 316
Alw26I	GTCTC	3 cut(s)	10, 153, 182
AoxI	GGCC	2 cut(s)	66, 397
ApeKI	GCWGC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	40
BanI	GGYRCC	2 cut(s)	35, 101
BbvI	GCAGC	1 cut(s)	314
BceAI	ACGGC	2 cut(s)	81, 109
BciVI	GTATCC	1 cut(s)	452
BcoDI	GTCTC	3 cut(s)	10, 153, 182
BfaI	CTAG	1 cut(s)	306
BfuAI	ACCTGC	1 cut(s)	544
BfuI	GTATCC	1 cut(s)	452
BisI	GCNGC	3 cut(s)	21, 76, 303
BlsI	GCNGC	3 cut(s)	22, 77, 304
BmeRI	GACNNNNNGTC	1 cut(s)	273
BmiI	GGNNCC	3 cut(s)	37, 94, 103
BmsI	GCATC	1 cut(s)	127
Bpu10I	CCTNAGC	1 cut(s)	79
BpuEI	CTTGAG	2 cut(s)	55, 498
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	93
BseRI	GAGGAG	2 cut(s)	40, 442
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	314
Bsh1236I	CGCG	2 cut(s)	23, 108
BshFI	GGCC	2 cut(s)	68, 399
BshNI	GGYRCC	2 cut(s)	35, 101
BsiSI	CCGG	1 cut(s)	99
BsmAI	GTCTC	3 cut(s)	10, 153, 182
BsmBI	CGTCTC	2 cut(s)	153, 182
BsnI	GGCC	2 cut(s)	68, 399
Bso31I	GGTCTC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	40
BspACI	CCGC	7 cut(s)	18, 21, 76, 106, 108, 122, 404
BspANI	GGCC	2 cut(s)	68, 399
BspCNI	CTCAG	1 cut(s)	92
BspFNI	CGCG	2 cut(s)	23, 108
BspLI	GGNNCC	3 cut(s)	37, 94, 103
BspMI	ACCTGC	1 cut(s)	544
BspT107I	GGYRCC	2 cut(s)	35, 101
BspTNI	GGTCTC	1 cut(s)	10
BsrBI	CCGCTC	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	106
Bst4CI	ACNGT	2 cut(s)	164, 174
Bst6I	CTCTTC	1 cut(s)	513
BstDEI	CTNAG	1 cut(s)	79
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	2 cut(s)	23, 108
BstMAI	GTCTC	3 cut(s)	10, 153, 182
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 232
BstSLI	GKGCMC	1 cut(s)	40
BstUI	CGCG	2 cut(s)	23, 108
BstV1I	GCAGC	1 cut(s)	314
BsuI	GTATCC	1 cut(s)	452
BsuRI	GGCC	2 cut(s)	68, 399
BtgI	CCRYGG	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	160
BveI	ACCTGC	1 cut(s)	544
Cfr42I	CCGCGG	1 cut(s)	109
CseI	GACGC	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	214
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	79
DraI	TTTAAA	1 cut(s)	477
DriI	GACNNNNNGTC	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	513
Eam1105I	GACNNNNNGTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	513
EciI	GGCGGA	2 cut(s)	7, 111
Eco31I	GGTCTC	1 cut(s)	10
Esp3I	CGTCTC	2 cut(s)	153, 182
FaiI	YATR	4 cut(s)	293, 300, 331, 567
FauI	CCCGC	1 cut(s)	113
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	3 cut(s)	21, 76, 303
FokI	GGATG	1 cut(s)	105
Fsp4HI	GCNGC	3 cut(s)	21, 76, 303
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	3 cut(s)	21, 76, 303
HaeIII	GGCC	2 cut(s)	68, 399
HapII	CCGG	1 cut(s)	99
HgaI	GACGC	1 cut(s)	135
HincII	GTYRAC	2 cut(s)	63, 267
HindII	GTYRAC	2 cut(s)	63, 267
HinfI	GANTC	3 cut(s)	155, 247, 268
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	4 cut(s)	63, 214, 267, 364
Hpy188III	TCNNGA	5 cut(s)	81, 136, 152, 467, 515
Hpy8I	GTNNAC	4 cut(s)	63, 214, 267, 364
Hpy99I	CGWCG	3 cut(s)	67, 130, 182
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	2 cut(s)	164, 174
HpyCH4IV	ACGT	2 cut(s)	191, 454
HpyCH4V	TGCA	2 cut(s)	302, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 232
HpyF3I	CTNAG	1 cut(s)	79
HpySE526I	ACGT	2 cut(s)	191, 454
KspI	CCGCGG	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	7 cut(s)	18, 66, 75, 112, 324, 452, 539
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	2 cut(s)	191, 454
MbiI	CCGCTC	1 cut(s)	78
MboII	GAAGA	5 cut(s)	96, 253, 365, 482, 530
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	2 cut(s)	131, 481
MlyI	GAGTC	1 cut(s)	262
MseI	TTAA	3 cut(s)	141, 410, 476
MspA1I	CMGCKG	1 cut(s)	108
MspI	CCGG	1 cut(s)	99
MvnI	CGCG	2 cut(s)	23, 108
MwoI	GCNNNNNNNGC	2 cut(s)	44, 232
NlaIV	GGNNCC	3 cut(s)	37, 94, 103
PfeI	GAWTC	2 cut(s)	155, 247
PflFI	GACNNNGTC	1 cut(s)	28
PkrI	GCNGC	3 cut(s)	22, 77, 304
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PspN4I	GGNNCC	3 cut(s)	37, 94, 103
PsyI	GACNNNGTC	1 cut(s)	28
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SacII	CCGCGG	1 cut(s)	109
SalI	GTCGAC	1 cut(s)	61
SaqAI	TTAA	3 cut(s)	141, 410, 476
SatI	GCNGC	3 cut(s)	21, 76, 303
SchI	GAGTC	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	1 cut(s)	127
Sfr303I	CCGCGG	1 cut(s)	109
SgrBI	CCGCGG	1 cut(s)	109
SmlI	CTYRAG	2 cut(s)	70, 513
SmoI	CTYRAG	2 cut(s)	70, 513
Sse9I	AATT	2 cut(s)	131, 481
SsiI	CCGC	7 cut(s)	18, 21, 76, 106, 108, 122, 404
SspMI	CTAG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	164, 174
TaiI	ACGT	2 cut(s)	194, 457
TaqI	TCGA	4 cut(s)	62, 153, 180, 535
TasI	AATT	2 cut(s)	131, 481
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	2 cut(s)	23, 78
TfiI	GAWTC	2 cut(s)	155, 247
Tru1I	TTAA	3 cut(s)	141, 410, 476
Tru9I	TTAA	3 cut(s)	141, 410, 476
TscAI	CASTG	1 cut(s)	167
TseI	GCWGC	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	167
Tth111I	GACNNNGTC	1 cut(s)	28
XcmI	CCANNNNNNNNNTGG	1 cut(s)	452
XmiI	GTMKAC	1 cut(s)	62
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.