Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005230.1

Orthogroup ID

OG0016313

Physical Location & Seq

Genomic Coordinates Reverse (-)

84362 .. 86700

Gene Structure 2339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005230.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgagcttcccactcgccctaatctcatgcacacctcactcccgctccctccgccatgacttcgtcggatgcccccacagccttcgccccctcgttagcgacctcagagcatctctcaattctcactggattctggtgttcgtcacggtggtgatgttctctgcggtgtccgtggtgtacttcaatcggtcattgaagcggaagaagatgaatcacagagaggttagcgtgaacaatccgaataagttcggaccaacaccgaatgagacattcttgggtctgctttatccaattgaaaattacaaagtgtatgactatttgactaatacaaaggtgaagtttatcttggtgactattgatctcgatgttaaagatgcagatgtcagaaatattgatgagaatgttcagagggaaatcataaatcacagatccttgaggcatccaaatattgtcaggttcaaaggggtcttggtgactccaagtaatttagctattgtcatggaatatgcagctggtggtgagctatttgagaggatatgtagtgctagtagatttagtgaagatgaggttacttcttcagtttacatgttagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

198

Amino Acids

22.63

Weight (kDa)

8.78

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016313)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22580
pyrus_communis	pycom10g10050
rosa_chinensis	RchiOBHm_Chr1g0360291 RchiOBHm_Chr4g0392001
rosa_laevigata	RLG00000019293
rosa_multiflora	Rmu_sc0003548.1_g000002 Rmu_sc0005230.1_g000016 Rmu_sc0010382.1_g000007
rosa_roxburghii	Rroxscaffold_1G00027230 Rroxscaffold_2G00132030 Rroxscaffold_7G00188300 Rroxscaffold_7G00194990
rosa_samantha	Rh2AG435600 Rh2CG421700 Rh4AG122200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	45
AciI	CCGC	4 cut(s)	43, 52, 164, 199
AclWI	GGATC	1 cut(s)	423
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	585
AgsI	TTSAA	4 cut(s)	184, 196, 296, 460
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AleI	CACNNNNGTG	1 cut(s)	149
AluBI	AGCT	4 cut(s)	6, 491, 512, 523
AluI	AGCT	4 cut(s)	6, 491, 512, 523
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	1 cut(s)	423
ApeKI	GCWGC	1 cut(s)	509
Asp700I	GAANNNNTTC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	5 cut(s)	163, 346, 361, 484, 530
AvaII	GGWCC	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	521
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	1 cut(s)	546
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BmsI	GCATC	4 cut(s)	59, 119, 364, 448
BplI	GAGNNNNNCTC	2 cut(s)	99, 131
BpuEI	CTTGAG	1 cut(s)	454
BsaJI	CCNNGG	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bse1I	ACTGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	2 cut(s)	74, 439
BseMII	CTCAG	1 cut(s)	118
BseNI	ACTGG	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	521
BsmAI	GTCTC	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	358, 428
BspACI	CCGC	4 cut(s)	43, 52, 164, 199
BspCNI	CTCAG	1 cut(s)	117
BspPI	GGATC	1 cut(s)	423
BsrBI	CCGCTC	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	2 cut(s)	358, 428
Bst4CI	ACNGT	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	104
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	74, 439
BstKTI	GATC	2 cut(s)	361, 431
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	2 cut(s)	358, 428
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 78
BstNSI	RCATGY	1 cut(s)	589
BstV1I	GCAGC	1 cut(s)	521
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	74, 439
BtsIMutI	CAGTG	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	4 cut(s)	27, 56, 499, 586
CviJI	RGCY	5 cut(s)	6, 81, 491, 512, 523
CviKI_1	RGCY	5 cut(s)	6, 81, 491, 512, 523
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	2 cut(s)	360, 430
DpnII	GATC	2 cut(s)	358, 428
EciI	GGCGGA	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	561
FaeI	CATG	4 cut(s)	30, 59, 502, 589
FaiI	YATR	8 cut(s)	28, 57, 312, 419, 500, 507, 538, 587
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FatI	CATG	4 cut(s)	26, 55, 498, 585
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	1 cut(s)	510
FokI	GGATG	2 cut(s)	81, 426
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	1 cut(s)	546
GluI	GCNGC	1 cut(s)	510
Hin1II	CATG	4 cut(s)	30, 59, 502, 589
HinfI	GANTC	3 cut(s)	130, 211, 475
HphI	GGTGA	5 cut(s)	163, 346, 361, 484, 530
Hpy166II	GTNNAC	3 cut(s)	178, 232, 583
Hpy188I	TCNGA	6 cut(s)	68, 107, 240, 251, 386, 408
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	3 cut(s)	178, 232, 583
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	92
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	3 cut(s)	30, 377, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 78
HpyF3I	CTNAG	1 cut(s)	104
Hsp92II	CATG	4 cut(s)	30, 59, 502, 589
Kzo9I	GATC	2 cut(s)	358, 428
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	4 cut(s)	112, 119, 439, 498
Lsp1109I	GCAGC	1 cut(s)	521
LweI	GCATC	4 cut(s)	59, 119, 364, 448
MaeI	CTAG	1 cut(s)	546
MaeIII	GTNAC	4 cut(s)	142, 349, 472, 568
MalI	GATC	2 cut(s)	360, 430
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	2 cut(s)	358, 428
MboII	GAAGA	4 cut(s)	214, 217, 567, 572
MfeI	CAATTG	1 cut(s)	291
MflI	RGATCY	1 cut(s)	428
MluCI	AATT	4 cut(s)	118, 291, 298, 484
MlyI	GAGTC	1 cut(s)	469
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	9 cut(s)	45, 59, 101, 113, 214, 402, 429, 525, 559
MroXI	GAANNNNTTC	1 cut(s)	245
MseI	TTAA	2 cut(s)	369, 595
MslI	CAYNNNNRTG	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	512
MunI	CAATTG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	51, 78
NdeII	GATC	2 cut(s)	358, 428
NlaIII	CATG	4 cut(s)	30, 59, 502, 589
NmuCI	GTSAC	3 cut(s)	142, 349, 472
NspI	RCATGY	1 cut(s)	589
OliI	CACNNNNGTG	1 cut(s)	149
PciI	ACATGT	1 cut(s)	585
PdmI	GAANNNNTTC	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	130, 211
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	511
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
PscI	ACATGT	1 cut(s)	585
PspPI	GGNCC	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	428
PsyI	GACNNNGTC	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	369, 595
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	2 cut(s)	358, 428
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	469
SfaNI	GCATC	4 cut(s)	59, 119, 364, 448
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
Sse9I	AATT	4 cut(s)	118, 291, 298, 484
SsiI	CCGC	4 cut(s)	43, 52, 164, 199
SspI	AATATT	2 cut(s)	391, 448
SspMI	CTAG	1 cut(s)	546
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	1 cut(s)	363
TaqII	GACCGA	1 cut(s)	177
TasI	AATT	4 cut(s)	118, 291, 298, 484
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	2 cut(s)	130, 211
Tru1I	TTAA	2 cut(s)	369, 595
Tru9I	TTAA	2 cut(s)	369, 595
TscAI	CASTG	1 cut(s)	131
TseFI	GTSAC	3 cut(s)	142, 349, 472
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	3 cut(s)	142, 349, 472
TspDTI	ATGAA	1 cut(s)	224
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	1 cut(s)	131
Tth111I	GACNNNGTC	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	251
XceI	RCATGY	1 cut(s)	589
XmnI	GAANNNNTTC	1 cut(s)	245
XspI	CTAG	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.