Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016313

Physical Location & Seq

Genomic Coordinates Reverse (-)

68973492 .. 68975872

Gene Structure 2381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00132030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCACACCTCACTCCAATTCCCTCCGCCGCGACTTCGTCGGTGCCCCCACACCTCCTCCCCTTGTCGGCGGCCTCGGGCCGCTCGGGAAGAACGAAGCCTCCGGCACTGCGGACATCGGCATCCGCCGTCGCAGTTCTTGATTAAAGCGTCTCTCGATTCTCACTTGTATTCTACTGTTCGTCGCGGTGGTGACGTTCTCGGAGGTGTCTATGGTGTACTTCAATCAGCCATTGAAGCCAAAGAAGATGAATCACGAGAGTGTGTATTGATCTTGGATTGTGTTACAATTATGGATATGAATCTTGTTTTGGTTTTCTGGTTTGCGATTGATGAGAATGTTCGAGAGGTTTACAATAGAGGAAATGCAGAAGTGCTTGTGGGAGGCCAAGCGGTGTTAAGGTGGAGGAATGGGAGGAGTAAAGTCCTAAACCATTTAGAACGTGGATACCTTACGGAAGATTTAAACAATTACAAGGTAATTGCCCCTCTTATGCAACATGCCCCGACAAAGTTTGGGAGTTTAGATTATGTGAAAAGGTCTACTCGGCTGGACAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

21.31

Weight (kDa)

9.53

Isoelectric Point (pI)

63.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016313)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22580
pyrus_communis	pycom10g10050
rosa_chinensis	RchiOBHm_Chr1g0360291 RchiOBHm_Chr4g0392001
rosa_laevigata	RLG00000019293
rosa_multiflora	Rmu_sc0003548.1_g000002 Rmu_sc0005230.1_g000016 Rmu_sc0010382.1_g000007
rosa_roxburghii	Rroxscaffold_1G00027230 Rroxscaffold_2G00132030 Rroxscaffold_7G00188300 Rroxscaffold_7G00194990
rosa_samantha	Rh2AG435600 Rh2CG421700 Rh4AG122200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	42
AccBSI	CCGCTC	1 cut(s)	83
AccI	GTMKAC	1 cut(s)	542
AccII	CGCG	2 cut(s)	31, 186
AciI	CCGC	8 cut(s)	26, 29, 70, 81, 111, 125, 186, 392
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	224, 236
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AleI	CACNNNNGTG	1 cut(s)	259
AloI	GAACNNNNNNTCC	2 cut(s)	84, 116
Alw26I	GTCTC	1 cut(s)	156
Ama87I	CYCGRG	2 cut(s)	75, 84
AoxI	GGCC	3 cut(s)	71, 78, 385
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	203
AvaI	CYCGRG	2 cut(s)	75, 84
BaeGI	GKGCMC	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	42
BauI	CACGAG	1 cut(s)	255
BceAI	ACGGC	1 cut(s)	112
BciVI	GTATCC	1 cut(s)	440
BcoDI	GTCTC	1 cut(s)	156
BfuI	GTATCC	1 cut(s)	440
BisI	GCNGC	3 cut(s)	29, 71, 81
BlsI	GCNGC	3 cut(s)	30, 72, 82
BmeT110I	CYCGRG	2 cut(s)	75, 84
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	44
BmsI	GCATC	1 cut(s)	130
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	74
BsaXI	ACNNNNNCTCC	4 cut(s)	41, 71, 84, 114
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse8I	GATNNNNATC	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	121
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseRI	GAGGAG	2 cut(s)	46, 430
BseSI	GKGCMC	1 cut(s)	47
Bsh1236I	CGCG	2 cut(s)	31, 186
BshFI	GGCC	3 cut(s)	73, 80, 387
BshNI	GGYRCC	1 cut(s)	42
BsiHKCI	CYCGRG	2 cut(s)	75, 84
BsiSI	CCGG	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	156
BsmBI	CGTCTC	1 cut(s)	156
BsnI	GGCC	3 cut(s)	73, 80, 387
BsoBI	CYCGRG	2 cut(s)	75, 84
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	270
BspACI	CCGC	8 cut(s)	26, 29, 70, 81, 111, 125, 186, 392
BspANI	GGCC	3 cut(s)	73, 80, 387
BspFNI	CGCG	2 cut(s)	31, 186
BspLI	GGNNCC	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	42
BsrBI	CCGCTC	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	1 cut(s)	270
BssSI	CACGAG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	178
BstF5I	GGATG	1 cut(s)	121
BstFNI	CGCG	2 cut(s)	31, 186
BstKTI	GATC	1 cut(s)	273
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	503
BstSLI	GKGCMC	1 cut(s)	47
BstUI	CGCG	2 cut(s)	31, 186
BsuI	GTATCC	1 cut(s)	440
BsuRI	GGCC	3 cut(s)	73, 80, 387
BtsCI	GGATG	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	78
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	1 cut(s)	500
CviJI	RGCY	7 cut(s)	73, 80, 99, 230, 239, 387, 550
CviKI_1	RGCY	7 cut(s)	73, 80, 99, 230, 239, 387, 550
CviQI	GTAC	1 cut(s)	218
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
DraI	TTTAAA	1 cut(s)	465
EciI	GGCGGA	2 cut(s)	15, 114
Eco88I	CYCGRG	2 cut(s)	75, 84
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	1 cut(s)	503
FaiI	YATR	6 cut(s)	213, 293, 299, 494, 501, 531
FatI	CATG	1 cut(s)	499
FblI	GTMKAC	1 cut(s)	542
Fnu4HI	GCNGC	3 cut(s)	29, 71, 81
FokI	GGATG	1 cut(s)	108
Fsp4HI	GCNGC	3 cut(s)	29, 71, 81
GluI	GCNGC	3 cut(s)	29, 71, 81
HaeIII	GGCC	3 cut(s)	73, 80, 387
HapII	CCGG	1 cut(s)	103
HgaI	GACGC	1 cut(s)	138
Hin1II	CATG	1 cut(s)	503
HinfI	GANTC	3 cut(s)	158, 251, 301
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	3 cut(s)	218, 352, 543
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	5 cut(s)	86, 139, 155, 255, 344
Hpy8I	GTNNAC	3 cut(s)	218, 352, 543
Hpy99I	CGWCG	3 cut(s)	42, 133, 186
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	2 cut(s)	195, 442
HpyCH4V	TGCA	3 cut(s)	4, 368, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpySE526I	ACGT	2 cut(s)	195, 442
Hsp92II	CATG	1 cut(s)	503
Kzo9I	GATC	1 cut(s)	270
LpnPI	CCDG	4 cut(s)	116, 304, 536, 541
LweI	GCATC	1 cut(s)	130
MaeII	ACGT	2 cut(s)	195, 442
MaeIII	GTNAC	2 cut(s)	191, 283
MalI	GATC	1 cut(s)	272
MbiI	CCGCTC	1 cut(s)	83
MboI	GATC	1 cut(s)	270
MboII	GAAGA	3 cut(s)	101, 257, 470
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	4 cut(s)	17, 288, 469, 480
MseI	TTAA	3 cut(s)	144, 398, 464
MslI	CAYNNNNRTG	1 cut(s)	259
MspI	CCGG	1 cut(s)	103
MvnI	CGCG	2 cut(s)	31, 186
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	1 cut(s)	503
NlaIV	GGNNCC	1 cut(s)	44
NmeAIII	GCCGAG	1 cut(s)	526
NmuCI	GTSAC	1 cut(s)	191
NspI	RCATGY	1 cut(s)	503
OliI	CACNNNNGTG	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	91
PfeI	GAWTC	3 cut(s)	158, 251, 301
PflFI	GACNNNGTC	1 cut(s)	36
PkrI	GCNGC	3 cut(s)	30, 72, 82
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	78
PsyI	GACNNNGTC	1 cut(s)	36
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	259
SaqAI	TTAA	3 cut(s)	144, 398, 464
SatI	GCNGC	3 cut(s)	29, 71, 81
Sau3AI	GATC	1 cut(s)	270
Sau96I	GGNCC	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	47
SfaNI	GCATC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	259
Sse9I	AATT	4 cut(s)	17, 288, 469, 480
SsiI	CCGC	8 cut(s)	26, 29, 70, 81, 111, 125, 186, 392
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	2 cut(s)	198, 445
TaqI	TCGA	2 cut(s)	156, 343
TasI	AATT	4 cut(s)	17, 288, 469, 480
TatI	WGTACW	1 cut(s)	217
TauI	GCSGC	3 cut(s)	31, 73, 83
TfiI	GAWTC	3 cut(s)	158, 251, 301
Tru1I	TTAA	3 cut(s)	144, 398, 464
Tru9I	TTAA	3 cut(s)	144, 398, 464
TscAI	CASTG	1 cut(s)	113
TseFI	GTSAC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	2 cut(s)	264, 314
TspGWI	ACGGA	1 cut(s)	470
TspRI	CASTG	1 cut(s)	113
Tth111I	GACNNNGTC	1 cut(s)	36
XceI	RCATGY	1 cut(s)	503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.