Rroxscaffold_1G00027230

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016313
Physical Location & Seq
Forward (+)
34406600 .. 34409703
3104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00027230.1

Sequence Viewer

Length: 891 bp
ATGCACACCTCACTCCAGTTCCCTCCGCCGCGACTTCGTCGGGTGCCCCCACAGCCTCCTCCCCTTGTCGGCGGCCTCGGCCGCTCGGGAAGAACAGGAGCCTCCGGCACCCTCGGACATCAGCATCCGCCGTCGCAGTTCTTGATTAAAGCGTCTCTCGATTCTCACTGTATTCTACTGTTCGTCGCGGTGGTGACGTTCTCGGAGGTGTCCGTGGTGTACTTCAATCAGCCATTGAAGCCAAAGAAGATGAATCACGAGAGAGAAAATAGAAATCTATTGGTAGTTTGTTATAAACTCATCCCCAAATTTCAGTTACGTGATTTGAAGGAAGTGAATGAAGAGGTTGCCATGTACAAGGTCAGGTTTCCAAAGGCTTTCATGGCAACCAAAAGTACCTCCTCCTCAGTTTTTCCTTCTTCCTCTTCTTCATATCCACCTTGGACCTATGATGTCTTCCTCAGCTTCAGAGAGATTGTTGAGTGCATGAAAGAGATGGGACAGACGATGCTTCCCATTTTCTGTAATGTAGATCCATCAAATGTACGGAAACAAACGGGAAGCTTTGCAGAAGCCTTTGAAGCACATGAAGAACACTTCAAGGATAACTTAGAAAAAGTGCAAATGTGGAGAGCTGCTTTGATCGAAGTGGCCAATCTTTCGGATTTCATCTCCAAGATGGATATGTACAAGGGGACTGCTGATACGAAAGGGATACTGCAAATAGATATGTACAAGGGGACTGCTGATACGAAAGGGATACTGCAAGCACAACCCCAGGGAAATGGTGAAGGTAATTGCCCCTCTTATGCAACATGCCCCGACAAAGTTTGGGAGTTTAGATTATGTGAAAAGGTCTACTCGGCTGGACAGACCTTATATATACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

296

Amino Acids

33.39

Weight (kDa)

8.73

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 156 - 224 1.7e-15 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 294
AccB1I GGYRCC 2 cut(s) 43, 107
AccBSI CCGCTC 1 cut(s) 84
AccI GTMKAC 1 cut(s) 858
AccII CGCG 2 cut(s) 31, 188
AciI CCGC 6 cut(s) 26, 29, 72, 82, 128, 188
AclWI GGATC 1 cut(s) 527
AcoI YGGCCR 2 cut(s) 79, 651
AcsI RAATTY 1 cut(s) 308
AcuI CTGAAG 1 cut(s) 451
AfaI GTAC 6 cut(s) 221, 356, 397, 546, 689, 734
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 5 cut(s) 226, 238, 328, 581, 601
AjnI CCWGG 1 cut(s) 777
AluBI AGCT 3 cut(s) 465, 564, 635
AluI AGCT 3 cut(s) 465, 564, 635
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 1 cut(s) 527
Ama87I CYCGRG 1 cut(s) 85
AoxI GGCC 3 cut(s) 73, 79, 651
ApeKI GCWGC 1 cut(s) 635
ApoI RAATTY 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 444
AsuHPI GGTGA 2 cut(s) 205, 800
AvaI CYCGRG 1 cut(s) 85
AvaII GGWCC 1 cut(s) 444
BaeGI GKGCMC 1 cut(s) 48
BalI TGGCCA 1 cut(s) 653
BanI GGYRCC 2 cut(s) 43, 107
BauI CACGAG 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 448
BbvCI CCTCAGC 1 cut(s) 461
BbvI GCAGC 1 cut(s) 622
BccI CCATC 3 cut(s) 490, 544, 673
BceAI ACGGC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 779
BciVI GTATCC 2 cut(s) 708, 753
BcoDI GTCTC 1 cut(s) 159
BfuI GTATCC 2 cut(s) 708, 753
BisI GCNGC 4 cut(s) 29, 73, 82, 636
BlsI GCNGC 4 cut(s) 30, 74, 83, 637
Bme1390I CCNGG 1 cut(s) 779
Bme18I GGWCC 1 cut(s) 444
BmeT110I CYCGRG 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 444
BmiI GGNNCC 3 cut(s) 45, 100, 109
BmrFI CCNGG 1 cut(s) 779
BmsI GCATC 2 cut(s) 133, 498
BpiI GAAGAC 1 cut(s) 448
Bpu10I CCTNAGC 1 cut(s) 461
BsaAI YACGTR 1 cut(s) 320
BsaJI CCNNGG 6 cut(s) 76, 112, 213, 440, 777, 778
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 16
BseBI CCWGG 1 cut(s) 779
BseDI CCNNGG 6 cut(s) 76, 112, 213, 440, 777, 778
BseGI GGATG 2 cut(s) 124, 300
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 2 cut(s) 420, 475
BseNI ACTGG 1 cut(s) 16
BseRI GAGGAG 3 cut(s) 48, 391, 394
BseSI GKGCMC 1 cut(s) 48
BseX3I CGGCCG 1 cut(s) 79
BseXI GCAGC 1 cut(s) 622
Bsh1236I CGCG 2 cut(s) 31, 188
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 3 cut(s) 75, 81, 653
BshNI GGYRCC 2 cut(s) 43, 107
BsiEI CGRYCG 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 85
BsiSI CCGG 1 cut(s) 105
BslFI GGGAC 3 cut(s) 513, 709, 754
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 159
BsmBI CGTCTC 1 cut(s) 159
BsmFI GGGAC 3 cut(s) 513, 709, 754
BsnI GGCC 3 cut(s) 75, 81, 653
BsoBI CYCGRG 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 48
Bsp1407I TGTACA 3 cut(s) 354, 687, 732
Bsp143I GATC 2 cut(s) 532, 642
BspACI CCGC 6 cut(s) 26, 29, 72, 82, 128, 188
BspANI GGCC 3 cut(s) 75, 81, 653
BspCNI CTCAG 2 cut(s) 419, 474
BspFNI CGCG 2 cut(s) 31, 188
BspLI GGNNCC 3 cut(s) 45, 100, 109
BspPI GGATC 1 cut(s) 527
BspT107I GGYRCC 2 cut(s) 43, 107
BsrBI CCGCTC 1 cut(s) 84
BsrGI TGTACA 3 cut(s) 354, 687, 732
BsrI ACTGG 1 cut(s) 16
BssECI CCNNGG 6 cut(s) 76, 112, 213, 440, 777, 778
BssMI GATC 2 cut(s) 532, 642
BssSI CACGAG 1 cut(s) 257
BssT1I CCWWGG 1 cut(s) 440
Bst2BI CACGAG 1 cut(s) 257
Bst2UI CCWGG 1 cut(s) 779
Bst4CI ACNGT 3 cut(s) 170, 180, 888
Bst6I CTCTTC 2 cut(s) 336, 430
BstAUI TGTACA 3 cut(s) 354, 687, 732
BstBAI YACGTR 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 768
BstDEI CTNAG 3 cut(s) 406, 461, 610
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 124, 300
BstFNI CGCG 2 cut(s) 31, 188
BstKTI GATC 2 cut(s) 535, 645
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 2 cut(s) 532, 642
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 6 cut(s) 52, 78, 81, 238, 383, 581
BstNI CCWGG 1 cut(s) 779
BstNSI RCATGY 1 cut(s) 819
BstSCI CCNGG 1 cut(s) 777
BstSLI GKGCMC 1 cut(s) 48
BstUI CGCG 2 cut(s) 31, 188
BstV1I GCAGC 1 cut(s) 622
BstV2I GAAGAC 1 cut(s) 448
BstX2I RGATCY 1 cut(s) 532
BstXI CCANNNNNNTGG 1 cut(s) 785
BstYI RGATCY 1 cut(s) 532
BstZI CGGCCG 1 cut(s) 79
BsuI GTATCC 2 cut(s) 708, 753
BsuRI GGCC 3 cut(s) 75, 81, 653
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 2 cut(s) 124, 300
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 768
Cfr13I GGNCC 1 cut(s) 444
CseI GACGC 1 cut(s) 141
Csp6I GTAC 6 cut(s) 220, 355, 396, 545, 688, 733
CviAII CATG 5 cut(s) 352, 382, 487, 587, 816
CviQI GTAC 6 cut(s) 220, 355, 396, 545, 688, 733
DdeI CTNAG 3 cut(s) 406, 461, 610
DpnI GATC 2 cut(s) 534, 644
DpnII GATC 2 cut(s) 532, 642
EaeI YGGCCR 2 cut(s) 79, 651
EagI CGGCCG 1 cut(s) 79
Eam1104I CTCTTC 2 cut(s) 336, 430
EarI CTCTTC 2 cut(s) 336, 430
EciI GGCGGA 2 cut(s) 15, 117
EclXI CGGCCG 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 440
Eco47I GGWCC 1 cut(s) 444
Eco52I CGGCCG 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 451
Eco88I CYCGRG 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 777
EcoT14I CCWWGG 1 cut(s) 440
ErhI CCWWGG 1 cut(s) 440
Esp3I CGTCTC 1 cut(s) 159
FaeI CATG 5 cut(s) 355, 385, 490, 590, 819
FalI AAGNNNNNCTT 2 cut(s) 593, 625
FaqI GGGAC 3 cut(s) 513, 709, 754
FatI CATG 5 cut(s) 351, 381, 486, 586, 815
FblI GTMKAC 1 cut(s) 858
Fnu4HI GCNGC 4 cut(s) 29, 73, 82, 636
FokI GGATG 2 cut(s) 111, 287
Fsp4HI GCNGC 4 cut(s) 29, 73, 82, 636
GluI GCNGC 4 cut(s) 29, 73, 82, 636
HaeIII GGCC 3 cut(s) 75, 81, 653
HapII CCGG 1 cut(s) 105
HgaI GACGC 1 cut(s) 141
Hin1II CATG 5 cut(s) 355, 385, 490, 590, 819
HindIII AAGCTT 1 cut(s) 562
HinfI GANTC 2 cut(s) 161, 253
HpaII CCGG 1 cut(s) 105
HphI GGTGA 2 cut(s) 205, 800
Hpy166II GTNNAC 2 cut(s) 220, 859
Hpy188I TCNGA 4 cut(s) 116, 205, 470, 664
Hpy188III TCNNGA 4 cut(s) 87, 142, 158, 257
Hpy8I GTNNAC 2 cut(s) 220, 859
Hpy99I CGWCG 3 cut(s) 42, 136, 188
HpyAV CCTTC 3 cut(s) 322, 426, 785
HpyCH4III ACNGT 3 cut(s) 170, 180, 888
HpyCH4IV ACGT 2 cut(s) 197, 319
HpyCH4V TGCA 7 cut(s) 4, 486, 569, 622, 721, 766, 812
HpyF10VI GCNNNNNNNGC 6 cut(s) 52, 78, 81, 238, 383, 581
HpyF3I CTNAG 3 cut(s) 406, 461, 610
HpySE526I ACGT 2 cut(s) 197, 319
Hsp92II CATG 5 cut(s) 355, 385, 490, 590, 819
Kzo9I GATC 2 cut(s) 532, 642
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 7 cut(s) 29, 81, 118, 349, 764, 791, 852
Lsp1109I GCAGC 1 cut(s) 622
LweI GCATC 2 cut(s) 133, 498
MaeII ACGT 2 cut(s) 197, 319
MaeIII GTNAC 2 cut(s) 193, 315
MalI GATC 2 cut(s) 534, 644
MbiI CCGCTC 1 cut(s) 84
MboI GATC 2 cut(s) 532, 642
MboII GAAGA 8 cut(s) 102, 259, 353, 411, 417, 420, 448, 602
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 1 cut(s) 48
MlsI TGGCCA 1 cut(s) 653
MluCI AATT 2 cut(s) 308, 796
MluNI TGGCCA 1 cut(s) 653
Mox20I TGGCCA 1 cut(s) 653
MscI TGGCCA 1 cut(s) 653
MseI TTAA 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 653
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 779
MvaI CCWGG 1 cut(s) 779
MvnI CGCG 2 cut(s) 31, 188
MwoI GCNNNNNNNGC 6 cut(s) 52, 78, 81, 238, 383, 581
NdeII GATC 2 cut(s) 532, 642
NlaIII CATG 5 cut(s) 355, 385, 490, 590, 819
NlaIV GGNNCC 3 cut(s) 45, 100, 109
NmeAIII GCCGAG 2 cut(s) 57, 842
NmuCI GTSAC 1 cut(s) 193
NspI RCATGY 1 cut(s) 819
PasI CCCWGGG 1 cut(s) 778
PfeI GAWTC 2 cut(s) 161, 253
PflFI GACNNNGTC 1 cut(s) 36
PkrI GCNGC 4 cut(s) 30, 74, 83, 637
Ppu21I YACGTR 1 cut(s) 320
PsiI TTATAA 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 777
PspGI CCWGG 1 cut(s) 777
PspN4I GGNNCC 3 cut(s) 45, 100, 109
PspPI GGNCC 1 cut(s) 444
PsuI RGATCY 1 cut(s) 532
PsyI GACNNNGTC 1 cut(s) 36
RsaI GTAC 6 cut(s) 221, 356, 397, 546, 689, 734
RsaNI GTAC 6 cut(s) 220, 355, 396, 545, 688, 733
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 4 cut(s) 29, 73, 82, 636
Sau3AI GATC 2 cut(s) 532, 642
Sau96I GGNCC 1 cut(s) 444
ScrFI CCNGG 1 cut(s) 779
SduI GDGCHC 1 cut(s) 48
SfaNI GCATC 2 cut(s) 133, 498
SinI GGWCC 1 cut(s) 444
Sse9I AATT 2 cut(s) 308, 796
SsiI CCGC 6 cut(s) 26, 29, 72, 82, 128, 188
StyD4I CCNGG 1 cut(s) 777
StyI CCWWGG 1 cut(s) 440
TaaI ACNGT 3 cut(s) 170, 180, 888
TaiI ACGT 2 cut(s) 200, 322
TaqI TCGA 2 cut(s) 159, 645
TasI AATT 2 cut(s) 308, 796
TatI WGTACW 4 cut(s) 219, 354, 687, 732
TauI GCSGC 3 cut(s) 31, 75, 84
TfiI GAWTC 2 cut(s) 161, 253
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 1 cut(s) 173
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 1 cut(s) 635
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 7 cut(s) 266, 354, 370, 420, 503, 603, 658
TspGWI ACGGA 2 cut(s) 202, 562
TspRI CASTG 1 cut(s) 173
Tth111I GACNNNGTC 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 444
XapI RAATTY 1 cut(s) 308
XceI RCATGY 1 cut(s) 819
XmiI GTMKAC 1 cut(s) 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.