Rroxscaffold_7G00188300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016313
Physical Location & Seq
Forward (+)
27871229 .. 27873006
1778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188300.1

Sequence Viewer

Length: 450 bp
ATGCCCATAAAAAACGGTGACAATCCTAACGAGAGAGAGAGCCGGAAGCGGAATCGGATTTTGGAGGAGCCGGAATCGGATCCTCCGGTTGAGCGGCAAGTCGAGATCCTTGTCGGATCGGGTCCTCGGGTTGAGCGGCAAGTTGAGGCTGCTGAACTCACGGTGGATCAATGCCTCGGCGCCGGCGACCATAGTCAAATTTCCCTCCGCCGCGACTTCGTCGGTGCCTCCACAGCCTCCTCCCCCTTGTCGGCGGCCTCGGGCCGCTCGGGACGAACAGAGCCTCCGGCACTGCGGACATCGCATCCGCCGACGCAGTTCTTGATTAAAGCGTCTCTCGATTCTCACTGTATTCTACTTGTTCGTCGCGGTGGTGACGTTCTCGGAGGTGTACGTGGTGTACTTCAATCAGCCATTGAAGCCAAAGAAGATGAATCACATAGAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.06

Weight (kDa)

6.1

Isoelectric Point (pI)

63.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 179, 224
AccBSI CCGCTC 3 cut(s) 94, 136, 267
AccII CGCG 2 cut(s) 213, 369
AclWI GGATC 5 cut(s) 74, 87, 100, 124, 174
AcsI RAATTY 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 2 cut(s) 393, 402
AfiI CCNNNNNNNGG 1 cut(s) 250
AgsI TTSAA 2 cut(s) 407, 419
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AloI GAACNNNNNNTCC 2 cut(s) 268, 300
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 5 cut(s) 74, 87, 100, 124, 174
Ama87I CYCGRG 3 cut(s) 126, 259, 268
AoxI GGCC 2 cut(s) 255, 262
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 198
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 122, 262
AsuHPI GGTGA 2 cut(s) 29, 386
AvaI CYCGRG 3 cut(s) 126, 259, 268
AvaII GGWCC 1 cut(s) 122
BamHI GGATCC 1 cut(s) 79
BanI GGYRCC 2 cut(s) 179, 224
BbvI GCAGC 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 339
BfoI RGCGCY 1 cut(s) 183
BisI GCNGC 6 cut(s) 95, 137, 150, 211, 255, 265
BlsI GCNGC 6 cut(s) 96, 138, 151, 212, 256, 266
Bme18I GGWCC 1 cut(s) 122
BmeT110I CYCGRG 3 cut(s) 126, 259, 268
BmgT120I GGNCC 2 cut(s) 122, 262
BmiI GGNNCC 5 cut(s) 69, 81, 123, 181, 226
BmsI GCATC 1 cut(s) 313
BoxI GACNNNNGTC 1 cut(s) 192
BsaAI YACGTR 1 cut(s) 395
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 3 cut(s) 125, 175, 258
BsaWI WCCGGW 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse118I RCCGGY 1 cut(s) 182
BseDI CCNNGG 3 cut(s) 125, 175, 258
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 250
BseRI GAGGAG 2 cut(s) 80, 229
BseXI GCAGC 1 cut(s) 136
Bsh1236I CGCG 2 cut(s) 213, 369
BshFI GGCC 2 cut(s) 257, 264
BshNI GGYRCC 2 cut(s) 179, 224
BsiHKCI CYCGRG 3 cut(s) 126, 259, 268
BsiSI CCGG 5 cut(s) 43, 71, 86, 183, 287
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 339
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 2 cut(s) 257, 264
BsoBI CYCGRG 3 cut(s) 126, 259, 268
Bsp143I GATC 4 cut(s) 79, 105, 116, 166
BspANI GGCC 2 cut(s) 257, 264
BspFNI CGCG 2 cut(s) 213, 369
BspLI GGNNCC 5 cut(s) 69, 81, 123, 181, 226
BspPI GGATC 5 cut(s) 74, 87, 100, 124, 174
BspT107I GGYRCC 2 cut(s) 179, 224
BsrBI CCGCTC 3 cut(s) 94, 136, 267
BsrFI RCCGGY 1 cut(s) 182
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 3 cut(s) 125, 175, 258
BssMI GATC 4 cut(s) 79, 105, 116, 166
BssNI GRCGYC 1 cut(s) 180
Bst4CI ACNGT 3 cut(s) 17, 163, 350
BstACI GRCGYC 1 cut(s) 180
BstBAI YACGTR 1 cut(s) 395
BstC8I GCNNGC 1 cut(s) 184
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 2 cut(s) 213, 369
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 4 cut(s) 82, 108, 119, 169
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 4 cut(s) 79, 105, 116, 166
BstMWI GCNNNNNNNGC 3 cut(s) 233, 301, 419
BstPAI GACNNNNGTC 1 cut(s) 192
BstUI CGCG 2 cut(s) 213, 369
BstV1I GCAGC 1 cut(s) 136
BstX2I RGATCY 2 cut(s) 79, 105
BstYI RGATCY 2 cut(s) 79, 105
BsuRI GGCC 2 cut(s) 257, 264
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 2 cut(s) 290, 346
Cac8I GCNNGC 1 cut(s) 184
CfoI GCGC 1 cut(s) 182
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 2 cut(s) 122, 262
CseI GACGC 2 cut(s) 321, 322
Csp6I GTAC 2 cut(s) 392, 401
CviJI RGCY 9 cut(s) 42, 70, 149, 236, 257, 264, 283, 413, 422
CviKI_1 RGCY 9 cut(s) 42, 70, 149, 236, 257, 264, 283, 413, 422
CviQI GTAC 2 cut(s) 392, 401
DinI GGCGCC 1 cut(s) 181
DpnI GATC 4 cut(s) 81, 107, 118, 168
DpnII GATC 4 cut(s) 79, 105, 116, 166
EciI GGCGGA 2 cut(s) 197, 297
Eco47I GGWCC 1 cut(s) 122
Eco88I CYCGRG 3 cut(s) 126, 259, 268
EcoO109I RGGNCCY 1 cut(s) 122
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
Esp3I CGTCTC 1 cut(s) 339
FaiI YATR 3 cut(s) 8, 192, 441
FaqI GGGAC 1 cut(s) 285
Fnu4HI GCNGC 6 cut(s) 95, 137, 150, 211, 255, 265
FokI GGATG 1 cut(s) 291
Fsp4HI GCNGC 6 cut(s) 95, 137, 150, 211, 255, 265
GlaI GCGC 1 cut(s) 181
GluI GCNGC 6 cut(s) 95, 137, 150, 211, 255, 265
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 2 cut(s) 257, 264
HapII CCGG 5 cut(s) 43, 71, 86, 183, 287
HgaI GACGC 2 cut(s) 321, 322
HhaI GCGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 180
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HinfI GANTC 4 cut(s) 52, 74, 341, 434
HpaII CCGG 5 cut(s) 43, 71, 86, 183, 287
HphI GGTGA 2 cut(s) 29, 386
Hpy166II GTNNAC 2 cut(s) 392, 401
Hpy188I TCNGA 4 cut(s) 57, 79, 116, 386
Hpy188III TCNNGA 4 cut(s) 103, 270, 322, 338
Hpy8I GTNNAC 2 cut(s) 392, 401
Hpy99I CGWCG 3 cut(s) 224, 316, 369
HpyCH4III ACNGT 3 cut(s) 17, 163, 350
HpyCH4IV ACGT 2 cut(s) 378, 394
HpyF10VI GCNNNNNNNGC 3 cut(s) 233, 301, 419
HpySE526I ACGT 2 cut(s) 378, 394
Hsp92I GRCGYC 1 cut(s) 180
HspAI GCGC 1 cut(s) 180
KasI GGCGCC 1 cut(s) 179
KroI GCCGGC 1 cut(s) 182
KroNI GCCGGC 1 cut(s) 184
Kzo9I GATC 4 cut(s) 79, 105, 116, 166
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 5 cut(s) 56, 84, 99, 196, 300
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 313
MaeII ACGT 2 cut(s) 378, 394
MaeIII GTNAC 2 cut(s) 17, 374
MalI GATC 4 cut(s) 81, 107, 118, 168
MbiI CCGCTC 3 cut(s) 94, 136, 267
MboI GATC 4 cut(s) 79, 105, 116, 166
MboII GAAGA 1 cut(s) 440
MflI RGATCY 2 cut(s) 79, 105
MluCI AATT 1 cut(s) 198
Mly113I GGCGCC 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 94
MreI CGCCGGCG 1 cut(s) 182
MroNI GCCGGC 1 cut(s) 182
MseI TTAA 1 cut(s) 327
MspI CCGG 5 cut(s) 43, 71, 86, 183, 287
MvnI CGCG 2 cut(s) 213, 369
MwoI GCNNNNNNNGC 3 cut(s) 233, 301, 419
NaeI GCCGGC 1 cut(s) 184
NarI GGCGCC 1 cut(s) 180
NdeII GATC 4 cut(s) 79, 105, 116, 166
NgoMIV GCCGGC 1 cut(s) 182
NlaIV GGNNCC 5 cut(s) 69, 81, 123, 181, 226
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 2 cut(s) 17, 374
PcsI WCGNNNNNNNCGW 2 cut(s) 183, 308
PdiI GCCGGC 1 cut(s) 184
PfeI GAWTC 4 cut(s) 52, 74, 341, 434
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 6 cut(s) 96, 138, 151, 212, 256, 266
PluTI GGCGCC 1 cut(s) 183
Ppu21I YACGTR 1 cut(s) 395
PpuMI RGGWCCY 1 cut(s) 122
PshAI GACNNNNGTC 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 122
PspN4I GGNNCC 5 cut(s) 69, 81, 123, 181, 226
PspPI GGNCC 2 cut(s) 122, 262
PspPPI RGGWCCY 1 cut(s) 122
PsuI RGATCY 2 cut(s) 79, 105
PsyI GACNNNGTC 1 cut(s) 218
RsaI GTAC 2 cut(s) 393, 402
RsaNI GTAC 2 cut(s) 392, 401
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 6 cut(s) 95, 137, 150, 211, 255, 265
Sau3AI GATC 4 cut(s) 79, 105, 116, 166
Sau96I GGNCC 2 cut(s) 122, 262
SetI ASST 4 cut(s) 381, 391, 397, 448
SfaNI GCATC 1 cut(s) 313
SfoI GGCGCC 1 cut(s) 181
SgrAI CRCCGGYG 1 cut(s) 182
SinI GGWCC 1 cut(s) 122
Sse9I AATT 1 cut(s) 198
SspDI GGCGCC 1 cut(s) 179
TaaI ACNGT 3 cut(s) 17, 163, 350
TaiI ACGT 2 cut(s) 381, 397
TaqI TCGA 2 cut(s) 102, 339
TasI AATT 1 cut(s) 198
TatI WGTACW 1 cut(s) 400
TauI GCSGC 5 cut(s) 97, 139, 213, 257, 267
TfiI GAWTC 4 cut(s) 52, 74, 341, 434
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 2 cut(s) 297, 353
TseFI GTSAC 2 cut(s) 17, 374
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 2 cut(s) 17, 374
TspDTI ATGAA 1 cut(s) 447
TspRI CASTG 2 cut(s) 297, 353
Tth111I GACNNNGTC 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.