Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0016313

Physical Location & Seq

Genomic Coordinates Reverse (-)

26432237 .. 26435522

Gene Structure 3286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG122200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAGCTTCTCTGCAAAGCCTCTACCACTCACTTTAATCTCACGCACACCTCACTCCCGCTCCCTCCGCTGCGAATTCGTCGGATGCCCCCACGGCCTCTGCCCCCTCGCCAGCGGCCTCAGGACGCTTAGGAAGAACAAGAGCCTCGTCGGCGCCAGCGGACGTCAGCATCCCCAGTCGCGGTTCTTGATTAAAGAGTCTCTAGATTCTCACTGGATTCTGGTGTTCGTCGCGGTGGTGATGTTCTCGGCTGTGTCTGTGGTGTACTTCAATCGGTCATTAAAGCCGAAGAAGATGAATCACAGAGAGTTACGTGATTTGAAGGAAGTGAAAGAAGAGGTTGCCAAGTACAAGGTCAGGTTGGACTTGGATTTTTGGTCGTTGTACAAGGAACATGTACAAGAGAACACTGGTATTGAAGGCTTGAAGGTACAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

146

Amino Acids

16.78

Weight (kDa)

9.87

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016313)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22580
pyrus_communis	pycom10g10050
rosa_chinensis	RchiOBHm_Chr1g0360291 RchiOBHm_Chr4g0392001
rosa_laevigata	RLG00000019293
rosa_multiflora	Rmu_sc0003548.1_g000002 Rmu_sc0005230.1_g000016 Rmu_sc0010382.1_g000007
rosa_roxburghii	Rroxscaffold_1G00027230 Rroxscaffold_2G00132030 Rroxscaffold_7G00188300 Rroxscaffold_7G00194990
rosa_samantha	Rh2AG435600 Rh2CG421700 Rh4AG122200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	166
AccB1I	GGYRCC	1 cut(s)	152
AccBSI	CCGCTC	1 cut(s)	60
AccII	CGCG	2 cut(s)	181, 233
AciI	CCGC	6 cut(s)	58, 67, 114, 159, 181, 233
AcsI	RAATTY	1 cut(s)	74
AcyI	GRCGYC	2 cut(s)	153, 163
AfaI	GTAC	5 cut(s)	266, 350, 386, 399, 432
AfiI	CCNNNNNNNGG	1 cut(s)	180
AflIII	ACRYGT	1 cut(s)	394
AgsI	TTSAA	4 cut(s)	271, 322, 419, 427
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
Alw26I	GTCTC	1 cut(s)	204
AoxI	GGCC	2 cut(s)	94, 115
ApeKI	GCWGC	1 cut(s)	69
ApoI	RAATTY	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	250
AxyI	CCTNAGG	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	1 cut(s)	203
BfoI	RGCGCY	1 cut(s)	156
BglI	GCCNNNNNGGC	2 cut(s)	93, 150
BisI	GCNGC	2 cut(s)	70, 115
BlsI	GCNGC	2 cut(s)	71, 116
BmiI	GGNNCC	1 cut(s)	154
BmrI	ACTGGG	1 cut(s)	169
BmsI	GCATC	2 cut(s)	74, 178
BmuI	ACTGGG	1 cut(s)	169
Bpu10I	CCTNAGC	1 cut(s)	128
BsaAI	YACGTR	1 cut(s)	314
BsaHI	GRCGYC	2 cut(s)	153, 163
BsaJI	CCNNGG	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse1I	ACTGG	3 cut(s)	175, 218, 415
Bse21I	CCTNAGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	2 cut(s)	89, 169
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	133
BseNI	ACTGG	3 cut(s)	175, 218, 415
BseXI	GCAGC	1 cut(s)	56
Bsh1236I	CGCG	2 cut(s)	181, 233
BshFI	GGCC	2 cut(s)	96, 117
BshNI	GGYRCC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	204
BsnI	GGCC	2 cut(s)	96, 117
Bsp1407I	TGTACA	2 cut(s)	384, 397
BspACI	CCGC	6 cut(s)	58, 67, 114, 159, 181, 233
BspANI	GGCC	2 cut(s)	96, 117
BspCNI	CTCAG	1 cut(s)	132
BspFNI	CGCG	2 cut(s)	181, 233
BspLI	GGNNCC	1 cut(s)	154
BspT107I	GGYRCC	1 cut(s)	152
BsrBI	CCGCTC	1 cut(s)	60
BsrGI	TGTACA	2 cut(s)	384, 397
BsrI	ACTGG	3 cut(s)	175, 218, 415
BssECI	CCNNGG	1 cut(s)	91
BssNI	GRCGYC	2 cut(s)	153, 163
Bst4CI	ACNGT	1 cut(s)	435
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	2 cut(s)	153, 163
BstAUI	TGTACA	2 cut(s)	384, 397
BstBAI	YACGTR	1 cut(s)	314
BstC8I	GCNNGC	2 cut(s)	112, 157
BstDEI	CTNAG	2 cut(s)	119, 128
BstDSI	CCRYGG	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	89, 169
BstFNI	CGCG	2 cut(s)	181, 233
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	155
BstMAI	GTCTC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 93, 150
BstNSI	RCATGY	1 cut(s)	398
BstUI	CGCG	2 cut(s)	181, 233
BstV1I	GCAGC	1 cut(s)	56
Bsu36I	CCTNAGG	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	96, 117
BtgI	CCRYGG	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	89, 169
BtsIMutI	CAGTG	2 cut(s)	211, 408
Cac8I	GCNNGC	2 cut(s)	112, 157
CfoI	GCGC	1 cut(s)	155
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	5 cut(s)	265, 349, 385, 398, 431
CviAII	CATG	1 cut(s)	395
CviJI	RGCY	8 cut(s)	6, 19, 96, 117, 144, 251, 286, 423
CviKI_1	RGCY	8 cut(s)	6, 19, 96, 117, 144, 251, 286, 423
CviQI	GTAC	5 cut(s)	265, 349, 385, 398, 431
DdeI	CTNAG	2 cut(s)	119, 128
DinI	GGCGCC	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco81I	CCTNAGG	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	74
EgeI	GGCGCC	1 cut(s)	154
EheI	GGCGCC	1 cut(s)	154
FaeI	CATG	1 cut(s)	398
FaiI	YATR	1 cut(s)	396
FatI	CATG	1 cut(s)	394
FauI	CCCGC	1 cut(s)	65
Fnu4HI	GCNGC	2 cut(s)	70, 115
FokI	GGATG	2 cut(s)	96, 156
Fsp4HI	GCNGC	2 cut(s)	70, 115
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	2 cut(s)	70, 115
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	2 cut(s)	96, 117
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	1 cut(s)	155
Hin1I	GRCGYC	2 cut(s)	153, 163
Hin1II	CATG	1 cut(s)	398
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HinfI	GANTC	4 cut(s)	197, 206, 217, 298
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	3 cut(s)	121, 187, 203
Hpy8I	GTNNAC	1 cut(s)	265
Hpy99I	CGWCG	3 cut(s)	83, 152, 233
HpyAV	CCTTC	3 cut(s)	316, 413, 421
HpyCH4III	ACNGT	1 cut(s)	435
HpyCH4IV	ACGT	2 cut(s)	163, 313
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 93, 150
HpyF3I	CTNAG	2 cut(s)	119, 128
HpySE526I	ACGT	2 cut(s)	163, 313
Hsp92I	GRCGYC	2 cut(s)	153, 163
Hsp92II	CATG	1 cut(s)	398
HspAI	GCGC	1 cut(s)	153
KasI	GGCGCC	1 cut(s)	152
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	8 cut(s)	106, 124, 169, 188, 199, 206, 343, 396
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	2 cut(s)	74, 178
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	2 cut(s)	163, 313
MaeIII	GTNAC	1 cut(s)	309
MbiI	CCGCTC	1 cut(s)	60
MboII	GAAGA	4 cut(s)	145, 301, 304, 347
MluCI	AATT	1 cut(s)	74
Mly113I	GGCGCC	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	2 cut(s)	61, 342
MnlI	CCTC	8 cut(s)	30, 60, 74, 107, 116, 128, 155, 331
MseI	TTAA	3 cut(s)	35, 192, 281
MspA1I	CMGCKG	3 cut(s)	69, 114, 159
MvnI	CGCG	2 cut(s)	181, 233
MwoI	GCNNNNNNNGC	3 cut(s)	66, 93, 150
NarI	GGCGCC	1 cut(s)	153
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	1 cut(s)	154
NmeAIII	GCCGAG	1 cut(s)	227
NspI	RCATGY	1 cut(s)	398
PciI	ACATGT	1 cut(s)	394
PfeI	GAWTC	3 cut(s)	206, 217, 298
PkrI	GCNGC	2 cut(s)	71, 116
PleI	GAGTC	1 cut(s)	205
PluTI	GGCGCC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	205
Ppu21I	YACGTR	1 cut(s)	314
PscI	ACATGT	1 cut(s)	394
PspN4I	GGNNCC	1 cut(s)	154
RsaI	GTAC	5 cut(s)	266, 350, 386, 399, 432
RsaNI	GTAC	5 cut(s)	265, 349, 385, 398, 431
SaqAI	TTAA	3 cut(s)	35, 192, 281
SatI	GCNGC	2 cut(s)	70, 115
SchI	GAGTC	1 cut(s)	206
SetI	ASST	8 cut(s)	8, 52, 166, 316, 342, 357, 362, 432
SfaNI	GCATC	2 cut(s)	74, 178
SfoI	GGCGCC	1 cut(s)	154
Sse9I	AATT	1 cut(s)	74
SsiI	CCGC	6 cut(s)	58, 67, 114, 159, 181, 233
SspDI	GGCGCC	1 cut(s)	152
SspMI	CTAG	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	435
TaiI	ACGT	2 cut(s)	166, 316
TaqII	GACCGA	1 cut(s)	264
TasI	AATT	1 cut(s)	74
TatI	WGTACW	4 cut(s)	264, 348, 384, 397
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	3 cut(s)	206, 217, 298
Tru1I	TTAA	3 cut(s)	35, 192, 281
Tru9I	TTAA	3 cut(s)	35, 192, 281
TscAI	CASTG	2 cut(s)	218, 415
TseI	GCWGC	1 cut(s)	69
TspDTI	ATGAA	1 cut(s)	311
TspRI	CASTG	2 cut(s)	218, 415
XapI	RAATTY	1 cut(s)	74
XbaI	TCTAGA	1 cut(s)	202
XceI	RCATGY	1 cut(s)	398
XspI	CTAG	1 cut(s)	203
ZraI	GACGTC	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.