Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016313

Physical Location & Seq

Genomic Coordinates Reverse (-)

37131442 .. 37139525

Gene Structure 8084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00194990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCACTTGGCACAACAGTTAAAGTCATCAAGGACGGTGCGTATGAAAATTGGGTTGGGTTGGGAACTCCGGTACTAATGCGGTGTCGACATTCAGGTAAGAGTACAAACATTGCTTCACCCAGTAACCAGCCAATTTTGGATGTTGGACCTTCACACGCTGAAACTGTTCCAGCTCCAAATACTATGGTCCATGATGTTACTGTGCCAATTACTCAAGTTAAGTTAGAACCCTTAACTGATGTAGCTCCAGACAAACAGGGGGAACAAGATGCTTTTTCCTCTTTGTTGACACGAGAGAGACTTCTTCTTCGATCTTCTTCCGATGAGCTTCTCTGTAAAGCCTCTGCCATTTGCCCTAATCTCATGCACACCTCACTCCAGTTCCCTCCGCCGCGACTTCGTCGGTGCCCCCACAGCCTCCTCCCCCTTGTCGGCGGCCTCGGGCCGCTCGGGAAGAACAGGAGCCTCGGCACCCTCGGACATCGGCATCCGCCGTCGCAGTTCTTGATTAAAGCGTCTCTCGATTCTCACTGTATTCTACTGTTCGTCGCGGTGGTGACGTTCTCGGAGGTGTACGTGGTGTACTTCAATCAGCCATTGAAGCCAAAGAAGATGAATCACGAGAGGTTAGCGATGAAGTTCCGATCAAAGATCGAGTATTGTTTTGTTGTTTTGAAGGATGAGATTAGAGATCTATTGAAGTTATCATCTTTGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

240

Amino Acids

26.54

Weight (kDa)

9.28

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016313)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22580
pyrus_communis	pycom10g10050
rosa_chinensis	RchiOBHm_Chr1g0360291 RchiOBHm_Chr4g0392001
rosa_laevigata	RLG00000019293
rosa_multiflora	Rmu_sc0003548.1_g000002 Rmu_sc0005230.1_g000016 Rmu_sc0010382.1_g000007
rosa_roxburghii	Rroxscaffold_1G00027230 Rroxscaffold_2G00132030 Rroxscaffold_7G00188300 Rroxscaffold_7G00194990
rosa_samantha	Rh2AG435600 Rh2CG421700 Rh4AG122200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	721
AccB1I	GGYRCC	2 cut(s)	408, 473
AccBSI	CCGCTC	1 cut(s)	451
AccI	GTMKAC	1 cut(s)	88
AccII	CGCG	2 cut(s)	397, 554
AciI	CCGC	7 cut(s)	82, 392, 395, 438, 449, 494, 554
AfaI	GTAC	4 cut(s)	75, 106, 578, 587
AfiI	CCNNNNNNNGG	1 cut(s)	434
AgsI	TTSAA	4 cut(s)	592, 604, 679, 703
AjuI	GAANNNNNNNTTGG	2 cut(s)	39, 71
AluBI	AGCT	3 cut(s)	176, 248, 331
AluI	AGCT	3 cut(s)	176, 248, 331
Alw26I	GTCTC	2 cut(s)	295, 525
Ama87I	CYCGRG	2 cut(s)	443, 452
AoxI	GGCC	2 cut(s)	439, 446
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
Asp700I	GAANNNNTTC	1 cut(s)	168
AspS9I	GGNCC	3 cut(s)	149, 190, 446
AsuHPI	GGTGA	2 cut(s)	111, 571
AvaI	CYCGRG	2 cut(s)	443, 452
AvaII	GGWCC	2 cut(s)	149, 190
BaeGI	GKGCMC	1 cut(s)	413
BanI	GGYRCC	2 cut(s)	408, 473
BauI	CACGAG	2 cut(s)	294, 623
BceAI	ACGGC	1 cut(s)	481
BcoDI	GTCTC	2 cut(s)	295, 525
BglII	AGATCT	1 cut(s)	694
BisI	GCNGC	3 cut(s)	395, 439, 449
BlsI	GCNGC	3 cut(s)	396, 440, 450
Bme18I	GGWCC	2 cut(s)	149, 190
BmeT110I	CYCGRG	2 cut(s)	443, 452
BmgT120I	GGNCC	3 cut(s)	149, 190, 446
BmiI	GGNNCC	3 cut(s)	410, 467, 475
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	2 cut(s)	262, 499
BmuI	ACTGGG	1 cut(s)	117
BpmI	CTGGAG	2 cut(s)	234, 365
BpuEI	CTTGAG	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	580
BsaJI	CCNNGG	3 cut(s)	442, 469, 478
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse1I	ACTGG	2 cut(s)	123, 382
Bse3DI	GCAATG	1 cut(s)	111
BseDI	CCNNGG	3 cut(s)	442, 469, 478
BseGI	GGATG	3 cut(s)	148, 490, 688
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseMI	GCAATG	1 cut(s)	111
BseNI	ACTGG	2 cut(s)	123, 382
BseRI	GAGGAG	1 cut(s)	413
BseSI	GKGCMC	1 cut(s)	413
Bsh1236I	CGCG	2 cut(s)	397, 554
BshFI	GGCC	2 cut(s)	441, 448
BshNI	GGYRCC	2 cut(s)	408, 473
BsiHKCI	CYCGRG	2 cut(s)	443, 452
BsiSI	CCGG	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	434
BsmAI	GTCTC	2 cut(s)	295, 525
BsmBI	CGTCTC	1 cut(s)	525
BsnI	GGCC	2 cut(s)	441, 448
BsoBI	CYCGRG	2 cut(s)	443, 452
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp143I	GATC	4 cut(s)	314, 647, 654, 694
BspACI	CCGC	7 cut(s)	82, 392, 395, 438, 449, 494, 554
BspANI	GGCC	2 cut(s)	441, 448
BspFNI	CGCG	2 cut(s)	397, 554
BspLI	GGNNCC	3 cut(s)	410, 467, 475
BspT107I	GGYRCC	2 cut(s)	408, 473
BsrBI	CCGCTC	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	111
BsrI	ACTGG	2 cut(s)	123, 382
BssECI	CCNNGG	3 cut(s)	442, 469, 478
BssMI	GATC	4 cut(s)	314, 647, 654, 694
BssSI	CACGAG	2 cut(s)	294, 623
Bst2BI	CACGAG	2 cut(s)	294, 623
Bst4CI	ACNGT	6 cut(s)	19, 38, 169, 205, 536, 546
BstBAI	YACGTR	1 cut(s)	580
BstF5I	GGATG	3 cut(s)	148, 490, 688
BstFNI	CGCG	2 cut(s)	397, 554
BstKTI	GATC	4 cut(s)	317, 650, 657, 697
BstMAI	GTCTC	2 cut(s)	295, 525
BstMBI	GATC	4 cut(s)	314, 647, 654, 694
BstMWI	GCNNNNNNNGC	2 cut(s)	417, 604
BstSLI	GKGCMC	1 cut(s)	413
BstUI	CGCG	2 cut(s)	397, 554
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
BsuRI	GGCC	2 cut(s)	441, 448
BtgZI	GCGATG	1 cut(s)	650
BtsCI	GGATG	3 cut(s)	148, 490, 688
BtsIMutI	CAGTG	1 cut(s)	532
Cfr13I	GGNCC	3 cut(s)	149, 190, 446
CseI	GACGC	1 cut(s)	507
Csp6I	GTAC	4 cut(s)	74, 105, 577, 586
CviAII	CATG	2 cut(s)	194, 367
CviQI	GTAC	4 cut(s)	74, 105, 577, 586
DpnI	GATC	4 cut(s)	316, 649, 656, 696
DpnII	GATC	4 cut(s)	314, 647, 654, 694
EciI	GGCGGA	2 cut(s)	381, 483
Eco47I	GGWCC	2 cut(s)	149, 190
Eco88I	CYCGRG	2 cut(s)	443, 452
Esp3I	CGTCTC	1 cut(s)	525
FaeI	CATG	2 cut(s)	197, 370
FaiI	YATR	5 cut(s)	45, 188, 195, 368, 721
FatI	CATG	2 cut(s)	193, 366
FblI	GTMKAC	1 cut(s)	88
Fnu4HI	GCNGC	3 cut(s)	395, 439, 449
FokI	GGATG	3 cut(s)	155, 477, 695
Fsp4HI	GCNGC	3 cut(s)	395, 439, 449
GluI	GCNGC	3 cut(s)	395, 439, 449
GsuI	CTGGAG	2 cut(s)	234, 365
HaeIII	GGCC	2 cut(s)	441, 448
HapII	CCGG	1 cut(s)	71
HgaI	GACGC	1 cut(s)	507
Hin1II	CATG	2 cut(s)	197, 370
HincII	GTYRAC	2 cut(s)	89, 291
HindII	GTYRAC	2 cut(s)	89, 291
HinfI	GANTC	2 cut(s)	527, 619
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	2 cut(s)	111, 571
Hpy166II	GTNNAC	4 cut(s)	89, 291, 577, 586
Hpy188I	TCNGA	4 cut(s)	325, 482, 571, 647
Hpy188III	TCNNGA	5 cut(s)	251, 454, 508, 524, 623
Hpy8I	GTNNAC	4 cut(s)	89, 291, 577, 586
Hpy99I	CGWCG	3 cut(s)	408, 502, 554
HpyAV	CCTTC	2 cut(s)	162, 673
HpyCH4III	ACNGT	6 cut(s)	19, 38, 169, 205, 536, 546
HpyCH4IV	ACGT	2 cut(s)	563, 579
HpyCH4V	TGCA	1 cut(s)	370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	417, 604
HpySE526I	ACGT	2 cut(s)	563, 579
Hsp92II	CATG	2 cut(s)	197, 370
Kzo9I	GATC	4 cut(s)	314, 647, 654, 694
LmnI	GCTCC	3 cut(s)	181, 253, 465
LpnPI	CCDG	9 cut(s)	81, 84, 136, 143, 186, 245, 264, 395, 448
LweI	GCATC	2 cut(s)	262, 499
MaeII	ACGT	2 cut(s)	563, 579
MaeIII	GTNAC	4 cut(s)	3, 125, 199, 559
MalI	GATC	4 cut(s)	316, 649, 656, 696
MbiI	CCGCTC	1 cut(s)	451
MboI	GATC	4 cut(s)	314, 647, 654, 694
MboII	GAAGA	6 cut(s)	299, 302, 309, 312, 469, 625
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	1 cut(s)	413
MluCI	AATT	3 cut(s)	49, 135, 210
MmeI	TCCRAC	1 cut(s)	127
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	4 cut(s)	21, 222, 236, 513
MspI	CCGG	1 cut(s)	71
MvnI	CGCG	2 cut(s)	397, 554
MwoI	GCNNNNNNNGC	2 cut(s)	417, 604
NdeII	GATC	4 cut(s)	314, 647, 654, 694
NlaIII	CATG	2 cut(s)	197, 370
NlaIV	GGNNCC	3 cut(s)	410, 467, 475
NmeAIII	GCCGAG	1 cut(s)	450
NmuCI	GTSAC	2 cut(s)	3, 559
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	527, 619
PflFI	GACNNNGTC	1 cut(s)	402
PkrI	GCNGC	3 cut(s)	396, 440, 450
Ppu21I	YACGTR	1 cut(s)	580
PsiI	TTATAA	1 cut(s)	721
PspN4I	GGNNCC	3 cut(s)	410, 467, 475
PspPI	GGNCC	3 cut(s)	149, 190, 446
PsuI	RGATCY	1 cut(s)	694
PsyI	GACNNNGTC	1 cut(s)	402
RsaI	GTAC	4 cut(s)	75, 106, 578, 587
RsaNI	GTAC	4 cut(s)	74, 105, 577, 586
SalI	GTCGAC	1 cut(s)	87
SaqAI	TTAA	4 cut(s)	21, 222, 236, 513
SatI	GCNGC	3 cut(s)	395, 439, 449
Sau3AI	GATC	4 cut(s)	314, 647, 654, 694
Sau96I	GGNCC	3 cut(s)	149, 190, 446
SduI	GDGCHC	1 cut(s)	413
SfaNI	GCATC	2 cut(s)	262, 499
SinI	GGWCC	2 cut(s)	149, 190
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	3 cut(s)	49, 135, 210
SsiI	CCGC	7 cut(s)	82, 392, 395, 438, 449, 494, 554
TaaI	ACNGT	6 cut(s)	19, 38, 169, 205, 536, 546
TaiI	ACGT	2 cut(s)	566, 582
TaqI	TCGA	4 cut(s)	88, 313, 525, 657
TasI	AATT	3 cut(s)	49, 135, 210
TatI	WGTACW	2 cut(s)	104, 585
TauI	GCSGC	3 cut(s)	397, 441, 451
TfiI	GAWTC	2 cut(s)	527, 619
Tru1I	TTAA	4 cut(s)	21, 222, 236, 513
Tru9I	TTAA	4 cut(s)	21, 222, 236, 513
TscAI	CASTG	1 cut(s)	539
TseFI	GTSAC	2 cut(s)	3, 559
Tsp45I	GTSAC	2 cut(s)	3, 559
TspDTI	ATGAA	3 cut(s)	60, 632, 653
TspRI	CASTG	1 cut(s)	539
Tth111I	GACNNNGTC	1 cut(s)	402
VpaK11BI	GGWCC	2 cut(s)	149, 190
XmiI	GTMKAC	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.