Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0016313

Physical Location & Seq

Genomic Coordinates Reverse (-)

64652964 .. 64657707

Gene Structure 4744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG435600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCGTTGGGCAAGGTGAAGGAGCTCGTCTCGTCCAATCCGGTAGTCATCTTCAGACAATGTGGTTTTTTTGAAATACTTAGTGCTGCAAGGTGGCTCACTATAGCATTTGCACAGAATGCTTGGTGCCTGGATTTAGGACGGTTGTCAGTGGGATTTGGCGTTTACAATAGAGGAAACCAGGGATTGCAGAAGTGCTTGTGGGAGGCCAAGCGGTGTTTGAGATTAAGGTGGAGGAATGGGAGCAGTAAAGTCCTAAACCATTTAGAACGTGAATACCTTCTGGAAGATTTGAACAATTACAGGATTTTGAAAATTAACAAGCACTCTGCTGCACTCCTCAATGGAAGACAAAGTCAGTTTGGTCGGTACAGCAAAGTTGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

129

Amino Acids

14.85

Weight (kDa)

10.03

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016313)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22580
pyrus_communis	pycom10g10050
rosa_chinensis	RchiOBHm_Chr1g0360291 RchiOBHm_Chr4g0392001
rosa_laevigata	RLG00000019293
rosa_multiflora	Rmu_sc0003548.1_g000002 Rmu_sc0005230.1_g000016 Rmu_sc0010382.1_g000007
rosa_roxburghii	Rroxscaffold_1G00027230 Rroxscaffold_2G00132030 Rroxscaffold_7G00188300 Rroxscaffold_7G00194990
rosa_samantha	Rh2AG435600 Rh2CG421700 Rh4AG122200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	126
AciI	CCGC	1 cut(s)	214
AcuI	CTGAAG	1 cut(s)	37
AfaI	GTAC	1 cut(s)	371
AgsI	TTSAA	4 cut(s)	74, 295, 313, 383
AjnI	CCWGG	2 cut(s)	129, 180
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	86, 332
Asp700I	GAANNNNTTC	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	73, 319
BciT130I	CCWGG	2 cut(s)	131, 182
BcoDI	GTCTC	1 cut(s)	34
BfmI	CTRYAG	1 cut(s)	102
BisI	GCNGC	2 cut(s)	87, 333
BlsI	GCNGC	2 cut(s)	88, 334
Bme1390I	CCNGG	2 cut(s)	131, 182
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	2 cut(s)	131, 182
BoxI	GACNNNNGTC	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	355
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BsaJI	CCNNGG	1 cut(s)	181
BsaWI	WCCGGW	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	131, 182
BseDI	CCNNGG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	73, 319
BsgI	GTGCAG	1 cut(s)	318
BshFI	GGCC	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	34
BsmBI	CGTCTC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	27
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	209
BspHI	TCATGA	1 cut(s)	386
BspLI	GGNNCC	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	181
Bst2UI	CCWGG	2 cut(s)	131, 182
Bst4CI	ACNGT	1 cut(s)	144
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstDEI	CTNAG	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	2 cut(s)	131, 182
BstPAI	GACNNNNGTC	1 cut(s)	145
BstSCI	CCNGG	2 cut(s)	129, 180
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	73, 319
BstV2I	GAAGAC	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	209
BtsIMutI	CAGTG	1 cut(s)	156
CciI	TCATGA	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	1 cut(s)	387
CviJI	RGCY	3 cut(s)	25, 97, 209
CviKI_1	RGCY	3 cut(s)	25, 97, 209
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	1 cut(s)	80
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	129, 180
EcoT38I	GRGCYC	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	1 cut(s)	390
FaiI	YATR	2 cut(s)	104, 388
FatI	CATG	1 cut(s)	386
Fnu4HI	GCNGC	2 cut(s)	87, 333
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	2 cut(s)	87, 333
GluI	GCNGC	2 cut(s)	87, 333
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	1 cut(s)	41
Hin1II	CATG	1 cut(s)	390
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	1 cut(s)	56
Hpy188III	TCNNGA	2 cut(s)	284, 387
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	2 cut(s)	13, 290
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	4 cut(s)	89, 113, 190, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	1 cut(s)	390
LmnI	GCTCC	2 cut(s)	22, 243
LpnPI	CCDG	7 cut(s)	54, 116, 143, 167, 194, 269, 289
Lsp1109I	GCAGC	2 cut(s)	73, 319
MaeII	ACGT	1 cut(s)	271
MboII	GAAGA	3 cut(s)	43, 299, 360
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	2 cut(s)	298, 315
MnlI	CCTC	4 cut(s)	167, 199, 228, 350
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	2 cut(s)	227, 318
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	2 cut(s)	131, 182
Mva1269I	GAATGC	1 cut(s)	124
MvaI	CCWGG	2 cut(s)	131, 182
MwoI	GCNNNNNNNGC	1 cut(s)	119
NlaIII	CATG	1 cut(s)	390
NlaIV	GGNNCC	1 cut(s)	128
PagI	TCATGA	1 cut(s)	386
PctI	GAATGC	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	383
PflFI	GACNNNGTC	1 cut(s)	354
PkrI	GCNGC	2 cut(s)	88, 334
PshAI	GACNNNNGTC	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	129, 180
PspGI	CCWGG	2 cut(s)	129, 180
PspN4I	GGNNCC	1 cut(s)	128
PsyI	GACNNNGTC	1 cut(s)	354
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	227, 318
SatI	GCNGC	2 cut(s)	87, 333
ScrFI	CCNGG	2 cut(s)	131, 182
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	6 cut(s)	18, 27, 95, 233, 274, 282
SfcI	CTRYAG	1 cut(s)	102
Sse9I	AATT	2 cut(s)	298, 315
SsiI	CCGC	1 cut(s)	214
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	129, 180
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	1 cut(s)	274
TasI	AATT	2 cut(s)	298, 315
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	2 cut(s)	227, 318
Tru9I	TTAA	2 cut(s)	227, 318
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	2 cut(s)	86, 332
TspRI	CASTG	1 cut(s)	156
Tth111I	GACNNNGTC	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.