Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003548.1

Orthogroup ID

OG0016313

Physical Location & Seq

Genomic Coordinates Reverse (-)

9161 .. 12234

Gene Structure 3074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003548.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atggtctctgttccctccgccacgacttcgtcaggtgcccccacagcctcctcccccttgtcgacggcctcaggccgctcaggaagaacaggagcctccggcacccgcggacatcagcatccgccgtcgcaattcttgattaaagcgtctctcgattctcactgtattctactgttcgtcgcggtggtgacgttctcggaggtgtctgtggtgtacttcaatcagccattgaagccaaagaagatgaatcacaaagaggtcttgttgactccaagtcatttagctattgtcatggaatatgcagctggtggtgagctatttgagaggatatgtagtgctggtagatttagtgaagataaggtttacaatagaggaaatgcagaagtgcttgtgggaggccaagcggtgttaaggtggaggaatgggaggagtaaagtcctaaaccatttagaacgtggataccttctggaagatttaaacaattacaaggtaattgcccctcttatgcaacatgccctgacaaagtttgggagtttagattatgtgaaaaggtctactcagctggacaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

190

Amino Acids

20.74

Weight (kDa)

9.69

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016313)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22580
pyrus_communis	pycom10g10050
rosa_chinensis	RchiOBHm_Chr1g0360291 RchiOBHm_Chr4g0392001
rosa_laevigata	RLG00000019293
rosa_multiflora	Rmu_sc0003548.1_g000002 Rmu_sc0005230.1_g000016 Rmu_sc0010382.1_g000007
rosa_roxburghii	Rroxscaffold_1G00027230 Rroxscaffold_2G00132030 Rroxscaffold_7G00188300 Rroxscaffold_7G00194990
rosa_samantha	Rh2AG435600 Rh2CG421700 Rh4AG122200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	35, 101
AccBSI	CCGCTC	1 cut(s)	78
AccI	GTMKAC	2 cut(s)	62, 554
AccII	CGCG	2 cut(s)	108, 182
AciI	CCGC	7 cut(s)	18, 76, 106, 108, 122, 182, 404
AfaI	GTAC	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	220, 232
AhdI	GACNNNNNGTC	1 cut(s)	273
AluBI	AGCT	4 cut(s)	284, 305, 316, 562
AluI	AGCT	4 cut(s)	284, 305, 316, 562
Alw26I	GTCTC	2 cut(s)	10, 153
AoxI	GGCC	3 cut(s)	66, 73, 397
ApeKI	GCWGC	1 cut(s)	302
AsuHPI	GGTGA	2 cut(s)	199, 323
AxyI	CCTNAGG	1 cut(s)	70
BaeGI	GKGCMC	1 cut(s)	40
BanI	GGYRCC	2 cut(s)	35, 101
BbvI	GCAGC	1 cut(s)	314
BceAI	ACGGC	2 cut(s)	81, 109
BciVI	GTATCC	1 cut(s)	452
BcoDI	GTCTC	2 cut(s)	10, 153
BfuI	GTATCC	1 cut(s)	452
BisI	GCNGC	2 cut(s)	76, 303
BlsI	GCNGC	2 cut(s)	77, 304
BmeRI	GACNNNNNGTC	1 cut(s)	273
BmiI	GGNNCC	3 cut(s)	37, 94, 103
BmsI	GCATC	1 cut(s)	127
Bpu10I	CCTNAGC	1 cut(s)	79
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	106
Bse21I	CCTNAGG	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	118
BseMII	CTCAG	3 cut(s)	84, 93, 572
BseRI	GAGGAG	2 cut(s)	40, 442
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	314
Bsh1236I	CGCG	2 cut(s)	108, 182
BshFI	GGCC	3 cut(s)	68, 75, 399
BshNI	GGYRCC	2 cut(s)	35, 101
BsiSI	CCGG	1 cut(s)	99
BsmAI	GTCTC	2 cut(s)	10, 153
BsmBI	CGTCTC	1 cut(s)	153
BsnI	GGCC	3 cut(s)	68, 75, 399
Bso31I	GGTCTC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	40
BspACI	CCGC	7 cut(s)	18, 76, 106, 108, 122, 182, 404
BspANI	GGCC	3 cut(s)	68, 75, 399
BspCNI	CTCAG	3 cut(s)	83, 92, 571
BspFNI	CGCG	2 cut(s)	108, 182
BspLI	GGNNCC	3 cut(s)	37, 94, 103
BspT107I	GGYRCC	2 cut(s)	35, 101
BspTNI	GGTCTC	1 cut(s)	10
BsrBI	CCGCTC	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	106
Bst4CI	ACNGT	2 cut(s)	164, 174
BstDEI	CTNAG	3 cut(s)	70, 79, 558
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	2 cut(s)	108, 182
BstMAI	GTCTC	2 cut(s)	10, 153
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 232
BstNSI	RCATGY	1 cut(s)	515
BstSLI	GKGCMC	1 cut(s)	40
BstUI	CGCG	2 cut(s)	108, 182
BstV1I	GCAGC	1 cut(s)	314
Bsu36I	CCTNAGG	1 cut(s)	70
BsuI	GTATCC	1 cut(s)	452
BsuRI	GGCC	3 cut(s)	68, 75, 399
BtgI	CCRYGG	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	160
Cfr42I	CCGCGG	1 cut(s)	109
CseI	GACGC	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	2 cut(s)	292, 512
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	3 cut(s)	70, 79, 558
DraI	TTTAAA	1 cut(s)	477
DriI	GACNNNNNGTC	1 cut(s)	273
Eam1105I	GACNNNNNGTC	1 cut(s)	273
EciI	GGCGGA	2 cut(s)	7, 111
Eco31I	GGTCTC	1 cut(s)	10
Eco81I	CCTNAGG	1 cut(s)	70
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	2 cut(s)	295, 515
FaiI	YATR	6 cut(s)	293, 300, 331, 506, 513, 543
FatI	CATG	2 cut(s)	291, 511
FauI	CCCGC	1 cut(s)	113
FblI	GTMKAC	2 cut(s)	62, 554
Fnu4HI	GCNGC	2 cut(s)	76, 303
FokI	GGATG	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	76, 303
GluI	GCNGC	2 cut(s)	76, 303
HaeIII	GGCC	3 cut(s)	68, 75, 399
HapII	CCGG	1 cut(s)	99
HgaI	GACGC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	295, 515
HincII	GTYRAC	2 cut(s)	63, 267
HindII	GTYRAC	2 cut(s)	63, 267
HinfI	GANTC	3 cut(s)	155, 247, 268
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	2 cut(s)	199, 323
Hpy166II	GTNNAC	5 cut(s)	63, 214, 267, 364, 555
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	4 cut(s)	81, 136, 152, 467
Hpy8I	GTNNAC	5 cut(s)	63, 214, 267, 364, 555
Hpy99I	CGWCG	3 cut(s)	67, 130, 182
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	2 cut(s)	164, 174
HpyCH4IV	ACGT	2 cut(s)	191, 454
HpyCH4V	TGCA	3 cut(s)	302, 380, 508
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 232
HpyF3I	CTNAG	3 cut(s)	70, 79, 558
HpySE526I	ACGT	2 cut(s)	191, 454
Hsp92II	CATG	2 cut(s)	295, 515
KspI	CCGCGG	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	92
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	1 cut(s)	127
MaeII	ACGT	2 cut(s)	191, 454
MaeIII	GTNAC	1 cut(s)	187
MbiI	CCGCTC	1 cut(s)	78
MboII	GAAGA	4 cut(s)	96, 253, 365, 482
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	3 cut(s)	131, 481, 492
MlyI	GAGTC	1 cut(s)	262
MseI	TTAA	3 cut(s)	141, 410, 476
MspA1I	CMGCKG	3 cut(s)	108, 305, 562
MspI	CCGG	1 cut(s)	99
MvnI	CGCG	2 cut(s)	108, 182
MwoI	GCNNNNNNNGC	2 cut(s)	44, 232
NlaIII	CATG	2 cut(s)	295, 515
NlaIV	GGNNCC	3 cut(s)	37, 94, 103
NmuCI	GTSAC	1 cut(s)	187
NspI	RCATGY	1 cut(s)	515
PfeI	GAWTC	2 cut(s)	155, 247
PflFI	GACNNNGTC	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	77, 304
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PspN4I	GGNNCC	3 cut(s)	37, 94, 103
PsyI	GACNNNGTC	1 cut(s)	28
PvuII	CAGCTG	2 cut(s)	305, 562
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SacII	CCGCGG	1 cut(s)	109
SalI	GTCGAC	1 cut(s)	61
SaqAI	TTAA	3 cut(s)	141, 410, 476
SatI	GCNGC	2 cut(s)	76, 303
SchI	GAGTC	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	1 cut(s)	127
Sfr303I	CCGCGG	1 cut(s)	109
SgrBI	CCGCGG	1 cut(s)	109
Sse9I	AATT	3 cut(s)	131, 481, 492
SsiI	CCGC	7 cut(s)	18, 76, 106, 108, 122, 182, 404
TaaI	ACNGT	2 cut(s)	164, 174
TaiI	ACGT	2 cut(s)	194, 457
TaqI	TCGA	2 cut(s)	62, 153
TasI	AATT	3 cut(s)	131, 481, 492
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	2 cut(s)	155, 247
Tru1I	TTAA	3 cut(s)	141, 410, 476
Tru9I	TTAA	3 cut(s)	141, 410, 476
TscAI	CASTG	1 cut(s)	167
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	167
Tth111I	GACNNNGTC	1 cut(s)	28
XceI	RCATGY	1 cut(s)	515
XcmI	CCANNNNNNNNNTGG	1 cut(s)	452
XmiI	GTMKAC	2 cut(s)	62, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.