Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0016313

Physical Location & Seq

Genomic Coordinates Forward (+)

49775188 .. 49775855

Gene Structure 668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019293

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAGCTTCCCACTTGCCCTAATCTCACGCACACCTCACTCCCGCTCCCTCCGCCATGACTTCGTCGGATGCCCCCACAGCCTCCGCCCCCTCGCTAGCGACCTCAGGTCGCTGAGGAAGAACTGGCGCCAGGGCCGGCCGTCTCTCGATTCTCACTGGATTCTGGTGTTCGTCACGGTGGTGATGCTCTCTGCGGTGTCCGTGGTGTACTTCAATCGGTCATTGAAGCGGAAGAAGATGAATCACAGAGAGAAATCTATTGAAATTTGGGTAATAAGACTCAACGAGGTCGTAGCCAGGACACTTCCGTCGCCGGGATTGAGCAAGCCAACAGAAACTGAGCCCGAGCCTGAGCCGGAGAAGATGATGGTCTGCGTCGCCGTCGTCGAGCATCAGCTTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

135

Amino Acids

15.45

Weight (kDa)

10.2

Isoelectric Point (pI)

67.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016313)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22580
pyrus_communis	pycom10g10050
rosa_chinensis	RchiOBHm_Chr1g0360291 RchiOBHm_Chr4g0392001
rosa_laevigata	RLG00000019293
rosa_multiflora	Rmu_sc0003548.1_g000002 Rmu_sc0005230.1_g000016 Rmu_sc0010382.1_g000007
rosa_roxburghii	Rroxscaffold_1G00027230 Rroxscaffold_2G00132030 Rroxscaffold_7G00188300 Rroxscaffold_7G00194990
rosa_samantha	Rh2AG435600 Rh2CG421700 Rh4AG122200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	126
AccBSI	CCGCTC	1 cut(s)	45
AciI	CCGC	5 cut(s)	43, 52, 85, 194, 229
AcoI	YGGCCR	1 cut(s)	137
AcsI	RAATTY	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	127
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	3 cut(s)	214, 226, 263
AhdI	GACNNNNNGTC	1 cut(s)	106
AjnI	CCWGG	2 cut(s)	129, 296
AleI	CACNNNNGTG	1 cut(s)	179
AluBI	AGCT	2 cut(s)	6, 397
AluI	AGCT	2 cut(s)	6, 397
Alw26I	GTCTC	1 cut(s)	147
AlwNI	CAGNNNCTG	1 cut(s)	338
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	2 cut(s)	133, 137
ApoI	RAATTY	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	133
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	1 cut(s)	193
AsuNHI	GCTAGC	1 cut(s)	95
AvaI	CYCGRG	1 cut(s)	344
AxyI	CCTNAGG	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	345
BbvCI	CCTCAGC	1 cut(s)	113
BccI	CCATC	1 cut(s)	361
BceAI	ACGGC	2 cut(s)	124, 365
BciT130I	CCWGG	2 cut(s)	131, 298
BcnI	CCSGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	130
Bme1390I	CCNGG	3 cut(s)	131, 298, 315
BmeRI	GACNNNNNGTC	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	3 cut(s)	131, 298, 315
BmsI	GCATC	3 cut(s)	59, 174, 400
BmtI	GCTAGC	1 cut(s)	99
Bpu10I	CCTNAGC	2 cut(s)	113, 351
BpuMI	CCSGG	1 cut(s)	315
BsaHI	GRCGYC	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	130, 201
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse118I	RCCGGY	1 cut(s)	135
Bse1I	ACTGG	2 cut(s)	128, 161
Bse21I	CCTNAGG	1 cut(s)	104
BseBI	CCWGG	2 cut(s)	131, 298
BseDI	CCNNGG	2 cut(s)	130, 201
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMII	CTCAG	4 cut(s)	104, 118, 330, 342
BseNI	ACTGG	2 cut(s)	128, 161
BseX3I	CGGCCG	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	140
BshFI	GGCC	2 cut(s)	135, 139
BshNI	GGYRCC	1 cut(s)	126
BsiEI	CGRYCG	1 cut(s)	140
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	3 cut(s)	136, 314, 356
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	1 cut(s)	147
BsmBI	CGTCTC	1 cut(s)	147
BsnI	GGCC	2 cut(s)	135, 139
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	345
BspACI	CCGC	5 cut(s)	43, 52, 85, 194, 229
BspANI	GGCC	2 cut(s)	135, 139
BspCNI	CTCAG	4 cut(s)	105, 117, 331, 343
BspLI	GGNNCC	1 cut(s)	128
BspOI	GCTAGC	1 cut(s)	99
BspT107I	GGYRCC	1 cut(s)	126
BsrBI	CCGCTC	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	128, 161
BssAI	RCCGGY	1 cut(s)	135
BssECI	CCNNGG	2 cut(s)	130, 201
BssNI	GRCGYC	1 cut(s)	127
Bst2UI	CCWGG	2 cut(s)	131, 298
Bst4CI	ACNGT	1 cut(s)	178
BstACI	GRCGYC	1 cut(s)	127
BstC8I	GCNNGC	3 cut(s)	97, 137, 326
BstDEI	CTNAG	4 cut(s)	104, 113, 339, 351
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	74
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	129
BstMAI	GTCTC	1 cut(s)	147
BstMCI	CGRYCG	1 cut(s)	140
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 78
BstNI	CCWGG	2 cut(s)	131, 298
BstSCI	CCNGG	3 cut(s)	129, 296, 313
BstZI	CGGCCG	1 cut(s)	137
Bsu36I	CCTNAGG	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	135, 139
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	74
BtsIMutI	CAGTG	2 cut(s)	154, 400
Cac8I	GCNNGC	3 cut(s)	97, 137, 326
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	133
CseI	GACGC	1 cut(s)	364
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	1 cut(s)	56
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	4 cut(s)	104, 113, 339, 351
DinI	GGCGCC	1 cut(s)	128
DrdI	GACNNNNNNGTC	1 cut(s)	307
DriI	GACNNNNNGTC	1 cut(s)	106
DseDI	GACNNNNNNGTC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	137
EagI	CGGCCG	1 cut(s)	137
Eam1105I	GACNNNNNGTC	1 cut(s)	106
EciI	GGCGGA	2 cut(s)	41, 74
EclXI	CGGCCG	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	345
Eco52I	CGGCCG	1 cut(s)	137
Eco81I	CCTNAGG	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	129, 296
EcoT38I	GRGCYC	1 cut(s)	345
EgeI	GGCGCC	1 cut(s)	128
EheI	GGCGCC	1 cut(s)	128
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	1 cut(s)	59
FaiI	YATR	1 cut(s)	57
FatI	CATG	1 cut(s)	55
FauI	CCCGC	1 cut(s)	50
FokI	GGATG	1 cut(s)	81
FriOI	GRGCYC	1 cut(s)	345
FseI	GGCCGGCC	1 cut(s)	139
FspBI	CTAG	1 cut(s)	96
GlaI	GCGC	1 cut(s)	128
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	135, 139
HapII	CCGG	3 cut(s)	136, 314, 356
HgaI	GACGC	1 cut(s)	364
HhaI	GCGC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	127
Hin1II	CATG	1 cut(s)	59
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HinfI	GANTC	4 cut(s)	149, 160, 241, 279
HpaII	CCGG	3 cut(s)	136, 314, 356
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	5 cut(s)	68, 313, 380, 386, 389
HpyCH4III	ACNGT	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 78
HpyF3I	CTNAG	4 cut(s)	104, 113, 339, 351
Hsp92I	GRCGYC	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	59
HspAI	GCGC	1 cut(s)	127
KasI	GGCGCC	1 cut(s)	126
KroI	GCCGGC	1 cut(s)	135
KroNI	GCCGGC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	50
LweI	GCATC	3 cut(s)	59, 174, 400
MaeI	CTAG	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	172
MbiI	CCGCTC	1 cut(s)	45
MboII	GAAGA	4 cut(s)	130, 244, 247, 373
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	1 cut(s)	264
Mly113I	GGCGCC	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	273
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	7 cut(s)	45, 59, 92, 101, 108, 113, 280
MroNI	GCCGGC	1 cut(s)	135
MslI	CAYNNNNRTG	1 cut(s)	179
MspI	CCGG	3 cut(s)	136, 314, 356
MspR9I	CCNGG	3 cut(s)	131, 298, 315
MvaI	CCWGG	2 cut(s)	131, 298
MwoI	GCNNNNNNNGC	2 cut(s)	51, 78
NaeI	GCCGGC	1 cut(s)	137
NarI	GGCGCC	1 cut(s)	127
NciI	CCSGG	1 cut(s)	315
NgoMIV	GCCGGC	1 cut(s)	135
NheI	GCTAGC	1 cut(s)	95
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	172
OliI	CACNNNNGTG	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PdiI	GCCGGC	1 cut(s)	137
PfeI	GAWTC	3 cut(s)	149, 160, 241
PflFI	GACNNNGTC	1 cut(s)	62
PleI	GAGTC	1 cut(s)	273
PluTI	GGCGCC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	273
Psp6I	CCWGG	2 cut(s)	129, 296
PspGI	CCWGG	2 cut(s)	129, 296
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	133
PstNI	CAGNNNCTG	1 cut(s)	338
PsyI	GACNNNGTC	1 cut(s)	62
RigI	GGCCGGCC	1 cut(s)	139
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	179
Sau96I	GGNCC	1 cut(s)	133
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	3 cut(s)	131, 298, 315
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	6 cut(s)	8, 37, 105, 110, 291, 399
SfaNI	GCATC	3 cut(s)	59, 174, 400
SfoI	GGCGCC	1 cut(s)	128
SmiMI	CAYNNNNRTG	1 cut(s)	179
Sse9I	AATT	1 cut(s)	264
SsiI	CCGC	5 cut(s)	43, 52, 85, 194, 229
SspDI	GGCGCC	1 cut(s)	126
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	3 cut(s)	129, 296, 313
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	2 cut(s)	147, 387
TaqII	GACCGA	1 cut(s)	207
TasI	AATT	1 cut(s)	264
TatI	WGTACW	1 cut(s)	207
TfiI	GAWTC	3 cut(s)	149, 160, 241
TscAI	CASTG	1 cut(s)	161
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	254
TspGWI	ACGGA	2 cut(s)	190, 297
TspRI	CASTG	1 cut(s)	161
Tth111I	GACNNNGTC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	264
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.