Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004183

Physical Location & Seq

Genomic Coordinates Reverse (-)

14690026 .. 14691024

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g11150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGATCTGGCTCCTCTTATTGGCTGACAAGTGCAAAAACATGGAAATCATATTTCTAAGTGGCTTCTGTCGTGTTACAGACAGGTTTCAAAACGATCCTGCGTTCTTGCTCCAATTATATAAGCTTAGGGTGTCTCATGGGACTCAGTTAATCGATTTGGTTTTTCATGACATTTCTGCAACTTCCCTTTCTTTAACACATGTTAGCTTGAGACGGTGCACTCTTTTAACCAGCCATGCAGTGACTAGGTTGGTGTCTAACAAGGATCTGGAAGTTTTGGATTTGAGAGATTGCAGAAACCTCGGGGATGAATCCCTCCGAGCCACAAGCACTCTTCCAAAAGTAAAGACATTGTTGCTAGATTGCTCTGATATTAGTGATGTGGGATTATTGTATTTGAGACCAGTGGTTATAAGTTCACTAATTTCATTGTCTGTTAGAGGATGCAAGAAACTTACGGATAATTACTTGTCCAATCTTCCTAATCTCTCCGATAATGCAGTTTTATTACTGGCAAAGAGTAGGATTCCGCTACTTGAACTGCGCATGCGGCAATGCCCACTCATAGGTGACACTGTAGTAATGGCATTAGCATCTATGCAAGTTGACGAGGAGAGGTGGCATGGTAACTGCTTAAGGTTGTTGGATCTGTTTAATTGTGGTGGGATTACCCCGCTTTCGTTTTGGTGGTTGAAGAAACCATATTTTCCAAGGCTGAGATGGTTGGGCGTTACGGGTAGTGTAAATAGAGATATGGTAGATGCTTTGGCTCCAAGTAGACCGTTCTTGCATGTTTCATGCCGTGGTGAGGAGCTGGGAGTTCAGCAAGGGGATACTGCCGATGATGTTTACATGCACGACTTTGATGAGATGGACGACCTTGAACAGTGGCTTGCAGAAGATGACTATGTTGATGACGATATGGTGAACGCAGAGGCAGTGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box LRR_6

Protein Analysis

316

Amino Acids

35.63

Weight (kDa)

5.09

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17020 AT2G17020 AT2G17020
fragaria_vesca	FvH4_2g15790 FvH4_2g15790 FvH4_2g15790 FvH4_2g15790 FvH4_2g15790
malus_domestica	MD05G1089200.v1.1 MD05G1127000.v1.1 MD10G1130200.v1.1 MD10G1130400.v1.1
prunus_persica	Prupe.8G170700_v2.0.a1 Prupe.8G170700_v2.0.a1 Prupe.8G170700_v2.0.a1 Prupe.8G170700_v2.0.a1
pyrus_communis	pycom05g12280 pycom10g11150 pycom10g11170
rosa_chinensis	RchiOBHm_Chr6g0279151
rosa_laevigata	RLG00000013161
rosa_multiflora	Rmu_co8081166.1_g000001 Rmu_sc0014203.1_g000013 Rmu_sc0014536.1_g000008
rosa_roxburghii	Rroxscaffold_7G00189070
rosa_rugosa	Rorug06G0123000 Rorug06G0123100 Rorug06G0123200
rosa_samantha	Rh6AG231600 Rh6BG236500 Rh6CG238500 Rh6DG230100
rosa_wichuraiana	Rw6G020270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
Acc16I	TGCGCA	1 cut(s)	545
AccI	GTMKAC	1 cut(s)	778
AciI	CCGC	3 cut(s)	530, 550, 674
AclWI	GGATC	3 cut(s)	89, 273, 654
AfiI	CCNNNNNNNGG	3 cut(s)	19, 566, 808
AflII	CTTAAG	1 cut(s)	634
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	4 cut(s)	89, 539, 694, 884
AluBI	AGCT	3 cut(s)	124, 207, 814
AluI	AGCT	3 cut(s)	124, 207, 814
Alw21I	GWGCWC	1 cut(s)	221
Alw26I	GTCTC	3 cut(s)	138, 205, 394
Alw44I	GTGCAC	1 cut(s)	217
AlwI	GGATC	3 cut(s)	89, 273, 654
Ama87I	CYCGRG	1 cut(s)	302
ApaLI	GTGCAC	1 cut(s)	217
AspLEI	GCGC	1 cut(s)	546
AsuHPI	GGTGA	3 cut(s)	581, 818, 937
AvaI	CYCGRG	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	221
BccI	CCATC	2 cut(s)	714, 865
BceAI	ACGGC	1 cut(s)	786
BcgI	CGANNNNNNTGC	2 cut(s)	283, 317
BciVI	GTATCC	1 cut(s)	826
BcoDI	GTCTC	3 cut(s)	138, 205, 394
BfaI	CTAG	2 cut(s)	246, 359
BfmI	CTRYAG	1 cut(s)	576
BfrI	CTTAAG	1 cut(s)	634
BfuI	GTATCC	1 cut(s)	826
BisI	GCNGC	1 cut(s)	551
BlsI	GCNGC	1 cut(s)	552
BmeT110I	CYCGRG	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	11, 771
BmsI	GCATC	3 cut(s)	434, 602, 751
Bpu10I	CCTNAGC	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	229
Bsa29I	ATCGAT	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	394
BsaJI	CCNNGG	3 cut(s)	301, 710, 802
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 566, 808
Bse1I	ACTGG	2 cut(s)	404, 516
Bse3DI	GCAATG	1 cut(s)	560
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	3 cut(s)	301, 710, 802
BseGI	GGATG	2 cut(s)	313, 449
BseLI	CCNNNNNNNGG	3 cut(s)	19, 566, 808
BseMI	GCAATG	1 cut(s)	560
BseMII	CTCAG	2 cut(s)	158, 707
BseNI	ACTGG	2 cut(s)	404, 516
BseRI	GAGGAG	2 cut(s)	626, 824
BseSI	GKGCMC	1 cut(s)	221
BseYI	CCCAGC	1 cut(s)	814
BshVI	ATCGAT	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	302
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	3 cut(s)	19, 566, 808
BsmAI	GTCTC	3 cut(s)	138, 205, 394
BsmBI	CGTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	154
Bso31I	GGTCTC	1 cut(s)	394
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	4 cut(s)	3, 94, 265, 646
BspACI	CCGC	3 cut(s)	530, 550, 674
BspCNI	CTCAG	2 cut(s)	157, 708
BspDI	ATCGAT	1 cut(s)	153
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	11, 771
BspPI	GGATC	3 cut(s)	89, 273, 654
BspTI	CTTAAG	1 cut(s)	634
BspTNI	GGTCTC	1 cut(s)	394
BsrDI	GCAATG	1 cut(s)	560
BsrI	ACTGG	2 cut(s)	404, 516
BssECI	CCNNGG	3 cut(s)	301, 710, 802
BssMI	GATC	4 cut(s)	3, 94, 265, 646
BssT1I	CCWWGG	1 cut(s)	710
Bst4CI	ACNGT	4 cut(s)	216, 577, 783, 888
Bst6I	CTCTTC	1 cut(s)	339
BstAFI	CTTAAG	1 cut(s)	634
BstC8I	GCNNGC	2 cut(s)	548, 894
BstDEI	CTNAG	4 cut(s)	56, 125, 144, 716
BstDSI	CCRYGG	1 cut(s)	802
BstF5I	GGATG	2 cut(s)	313, 449
BstHHI	GCGC	1 cut(s)	546
BstKTI	GATC	4 cut(s)	6, 97, 268, 649
BstMAI	GTCTC	3 cut(s)	138, 205, 394
BstMBI	GATC	4 cut(s)	3, 94, 265, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	550
BstNSI	RCATGY	4 cut(s)	203, 550, 794, 856
BstSFI	CTRYAG	1 cut(s)	576
BstSLI	GKGCMC	1 cut(s)	221
BstX2I	RGATCY	2 cut(s)	265, 646
BstYI	RGATCY	2 cut(s)	265, 646
Bsu15I	ATCGAT	1 cut(s)	153
BsuI	GTATCC	1 cut(s)	826
BsuTUI	ATCGAT	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	802
BtsCI	GGATG	2 cut(s)	313, 449
BtsI	GCAGTG	2 cut(s)	246, 945
BtsIMutI	CAGTG	5 cut(s)	246, 411, 573, 893, 945
Cac8I	GCNNGC	2 cut(s)	548, 894
CciI	TCATGA	1 cut(s)	166
CfoI	GCGC	1 cut(s)	546
ClaI	ATCGAT	1 cut(s)	153
DdeI	CTNAG	4 cut(s)	56, 125, 144, 716
DpnI	GATC	4 cut(s)	5, 96, 267, 648
DpnII	GATC	4 cut(s)	3, 94, 265, 646
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	710
Eco31I	GGTCTC	1 cut(s)	394
Eco88I	CYCGRG	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	710
ErhI	CCWWGG	1 cut(s)	710
Esp3I	CGTCTC	1 cut(s)	205
FaqI	GGGAC	1 cut(s)	154
FauI	CCCGC	1 cut(s)	681
FblI	GTMKAC	1 cut(s)	778
Fnu4HI	GCNGC	1 cut(s)	551
FokI	GGATG	2 cut(s)	320, 456
Fsp4HI	GCNGC	1 cut(s)	551
FspBI	CTAG	2 cut(s)	246, 359
FspI	TGCGCA	1 cut(s)	545
GlaI	GCGC	1 cut(s)	545
GluI	GCNGC	1 cut(s)	551
GsaI	CCCAGC	1 cut(s)	818
HhaI	GCGC	1 cut(s)	546
Hin6I	GCGC	1 cut(s)	544
HinP1I	GCGC	1 cut(s)	544
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	3 cut(s)	142, 311, 526
HphI	GGTGA	3 cut(s)	581, 818, 937
Hpy166II	GTNNAC	6 cut(s)	219, 419, 607, 779, 850, 928
Hpy188I	TCNGA	3 cut(s)	320, 370, 493
Hpy188III	TCNNGA	2 cut(s)	167, 269
Hpy8I	GTNNAC	6 cut(s)	219, 419, 607, 779, 850, 928
HpyCH4III	ACNGT	4 cut(s)	216, 577, 783, 888
HpyF10VI	GCNNNNNNNGC	1 cut(s)	550
HpyF3I	CTNAG	4 cut(s)	56, 125, 144, 716
HspAI	GCGC	1 cut(s)	544
Kzo9I	GATC	4 cut(s)	3, 94, 265, 646
LmnI	GCTCC	4 cut(s)	15, 114, 775, 811
LpnPI	CCDG	7 cut(s)	67, 111, 244, 254, 417, 497, 800
LweI	GCATC	3 cut(s)	434, 602, 751
MaeI	CTAG	2 cut(s)	246, 359
MaeIII	GTNAC	5 cut(s)	73, 241, 569, 626, 730
MalI	GATC	4 cut(s)	5, 96, 267, 648
MboI	GATC	4 cut(s)	3, 94, 265, 646
MboII	GAAGA	4 cut(s)	326, 470, 706, 911
MflI	RGATCY	2 cut(s)	265, 646
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	4 cut(s)	113, 423, 463, 655
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	624
MnlI	CCTC	8 cut(s)	23, 311, 326, 434, 604, 609, 802, 928
MseI	TTAA	5 cut(s)	149, 194, 227, 635, 654
MspCI	CTTAAG	1 cut(s)	634
MwoI	GCNNNNNNNGC	1 cut(s)	550
NdeII	GATC	4 cut(s)	3, 94, 265, 646
NlaIV	GGNNCC	2 cut(s)	11, 771
NmuCI	GTSAC	2 cut(s)	241, 569
NsbI	TGCGCA	1 cut(s)	545
NspI	RCATGY	4 cut(s)	203, 550, 794, 856
PaeI	GCATGC	1 cut(s)	550
PagI	TCATGA	1 cut(s)	166
PciI	ACATGT	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	311, 526
PkrI	GCNGC	1 cut(s)	552
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PscI	ACATGT	1 cut(s)	199
PsiI	TTATAA	1 cut(s)	413
PspFI	CCCAGC	1 cut(s)	814
PspN4I	GGNNCC	2 cut(s)	11, 771
PsuI	RGATCY	2 cut(s)	265, 646
SaqAI	TTAA	5 cut(s)	149, 194, 227, 635, 654
SatI	GCNGC	1 cut(s)	551
Sau3AI	GATC	4 cut(s)	3, 94, 265, 646
SchI	GAGTC	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	221
SfaNI	GCATC	3 cut(s)	434, 602, 751
SfcI	CTRYAG	1 cut(s)	576
SmlI	CTYRAG	2 cut(s)	208, 634
SmoI	CTYRAG	2 cut(s)	208, 634
SphI	GCATGC	1 cut(s)	550
Sse9I	AATT	4 cut(s)	113, 423, 463, 655
SsiI	CCGC	3 cut(s)	530, 550, 674
SspMI	CTAG	2 cut(s)	246, 359
StyI	CCWWGG	1 cut(s)	710
TaaI	ACNGT	4 cut(s)	216, 577, 783, 888
TaqI	TCGA	1 cut(s)	153
TasI	AATT	4 cut(s)	113, 423, 463, 655
TauI	GCSGC	1 cut(s)	553
TfiI	GAWTC	2 cut(s)	311, 526
Tru1I	TTAA	5 cut(s)	149, 194, 227, 635, 654
Tru9I	TTAA	5 cut(s)	149, 194, 227, 635, 654
TscAI	CASTG	5 cut(s)	246, 411, 580, 893, 945
TseFI	GTSAC	2 cut(s)	241, 569
Tsp45I	GTSAC	2 cut(s)	241, 569
TspDTI	ATGAA	4 cut(s)	155, 324, 417, 786
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	5 cut(s)	246, 411, 580, 893, 945
Vha464I	CTTAAG	1 cut(s)	634
VneI	GTGCAC	1 cut(s)	217
XceI	RCATGY	4 cut(s)	203, 550, 794, 856
XcmI	CCANNNNNNNNNTGG	1 cut(s)	717
XmiI	GTMKAC	1 cut(s)	778
XspI	CTAG	2 cut(s)	246, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.