Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004183

Physical Location & Seq

Genomic Coordinates Reverse (-)

17018803 .. 17019559

Gene Structure 757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0123000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCAAATGAAAGATCTAGAGGTAAAAACCTGGTTTTCTAGAAATGACTTCCCTAAGGATATGAGGCCCAAAATCATGGAATATGCACACAAACTAGTTGAACAGAACAAAGAAGTCCATTTGGAGAATATCCTCTCCATTCTTCCCTTGGAGCAGAAAAGACTTATCAAGCGCCATCTTTGCTTGGCTATGTTGGCAAAAGTGCCAATTCTTCAAGAAATGAATGAAGATATGTTGGTAAAAATCTTTGATAAACTGAAACCTGTGAACTATTCTGGGGATACCAATATAATTGAAGAGGGAGAACCACTTGTTAAGATGCTCTTCATCACGCATGGCACTGTATTAACCTACAGTATAGCTAGTAGTGCCGGAACTAGCAGTGCAGGGTCTTCCACCACTAAGTGGCTTGACATTGGTGATTTTCACGGAGAAGAACTTCTTAATTGGGCAACAACATTTTTTGATGCTCCTACATTGCCCATCTCAACAAGAACAGTCAAGTCTCTCACAAAAGTTGAAGCCTTTGTTCTCATGGCCAACGACTTGAGAGTTTTCGTCTATAAGTTGTTGATGCCTTTCAACAAGGAGGTCAAAATGCCGATGCACCTTGGTGCAAATTTTATACAATCCAACTGGCGCCGCCATGATAAGAGGATGGCCCGAGGTAAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box LRR_6

Protein Analysis

225

Amino Acids

26.0

Weight (kDa)

9.32

Isoelectric Point (pI)

53.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17020 AT2G17020 AT2G17020
fragaria_vesca	FvH4_2g15790 FvH4_2g15790 FvH4_2g15790 FvH4_2g15790 FvH4_2g15790
malus_domestica	MD05G1089200.v1.1 MD05G1127000.v1.1 MD10G1130200.v1.1 MD10G1130400.v1.1
prunus_persica	Prupe.8G170700_v2.0.a1 Prupe.8G170700_v2.0.a1 Prupe.8G170700_v2.0.a1 Prupe.8G170700_v2.0.a1
pyrus_communis	pycom05g12280 pycom10g11150 pycom10g11170
rosa_chinensis	RchiOBHm_Chr6g0279151
rosa_laevigata	RLG00000013161
rosa_multiflora	Rmu_co8081166.1_g000001 Rmu_sc0014203.1_g000013 Rmu_sc0014536.1_g000008
rosa_roxburghii	Rroxscaffold_7G00189070
rosa_rugosa	Rorug06G0123000 Rorug06G0123100 Rorug06G0123200
rosa_samantha	Rh6AG231600 Rh6BG236500 Rh6CG238500 Rh6DG230100
rosa_wichuraiana	Rw6G020270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	639
AccB7I	CCANNNNNTGG	1 cut(s)	405
AciI	CCGC	1 cut(s)	643
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	1 cut(s)	619
AcyI	GRCGYC	1 cut(s)	640
AdeI	CACNNNGTG	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	405
AgsI	TTSAA	5 cut(s)	101, 215, 296, 521, 583
AhlI	ACTAGT	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	29
AleI	CACNNNNGTG	1 cut(s)	612
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	510
Ama87I	CYCGRG	1 cut(s)	663
AoxI	GGCC	3 cut(s)	65, 537, 660
ApoI	RAATTY	1 cut(s)	619
Asp700I	GAANNNNTTC	1 cut(s)	438
AspLEI	GCGC	2 cut(s)	174, 642
AspS9I	GGNCC	2 cut(s)	66, 661
AsuHPI	GGTGA	1 cut(s)	431
AvaI	CYCGRG	1 cut(s)	663
AxyI	CCTNAGG	1 cut(s)	54
BalI	TGGCCA	1 cut(s)	539
BanI	GGYRCC	1 cut(s)	639
BbsI	GAAGAC	1 cut(s)	384
BccI	CCATC	3 cut(s)	183, 491, 652
BciT130I	CCWGG	1 cut(s)	31
BciVI	GTATCC	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	510
BcuI	ACTAGT	1 cut(s)	94
BfaI	CTAG	5 cut(s)	17, 39, 95, 363, 378
BfmI	CTRYAG	1 cut(s)	352
BfoI	RGCGCY	2 cut(s)	175, 643
BfuI	GTATCC	1 cut(s)	274
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	1 cut(s)	643
BlsI	GCNGC	1 cut(s)	644
Bme1390I	CCNGG	1 cut(s)	31
BmeT110I	CYCGRG	1 cut(s)	663
BmgT120I	GGNCC	2 cut(s)	66, 661
BmiI	GGNNCC	1 cut(s)	641
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	4 cut(s)	309, 457, 564, 594
BpiI	GAAGAC	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	568
BsaHI	GRCGYC	1 cut(s)	640
BsaJI	CCNNGG	3 cut(s)	147, 610, 664
Bsc4I	CCNNNNNNNGG	1 cut(s)	405
Bse1I	ACTGG	1 cut(s)	641
Bse21I	CCTNAGG	1 cut(s)	54
Bse3DI	GCAATG	1 cut(s)	476
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	3 cut(s)	147, 610, 664
BseGI	GGATG	1 cut(s)	663
BseLI	CCNNNNNNNGG	1 cut(s)	405
BseMI	GCAATG	1 cut(s)	476
BseNI	ACTGG	1 cut(s)	641
BsgI	GTGCAG	1 cut(s)	405
BshFI	GGCC	3 cut(s)	67, 539, 662
BshNI	GGYRCC	1 cut(s)	639
BsiHKCI	CYCGRG	1 cut(s)	663
BsiSI	CCGG	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	405
BsmAI	GTCTC	1 cut(s)	510
BsnI	GGCC	3 cut(s)	67, 539, 662
BsoBI	CYCGRG	1 cut(s)	663
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	1 cut(s)	643
BspANI	GGCC	3 cut(s)	67, 539, 662
BspLI	GGNNCC	1 cut(s)	641
BspQI	GCTCTTC	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	639
BsrDI	GCAATG	1 cut(s)	476
BsrI	ACTGG	1 cut(s)	641
BssECI	CCNNGG	3 cut(s)	147, 610, 664
BssMI	GATC	1 cut(s)	13
BssNI	GRCGYC	1 cut(s)	640
BssT1I	CCWWGG	2 cut(s)	147, 610
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	3 cut(s)	343, 356, 499
Bst6I	CTCTTC	2 cut(s)	291, 329
BstACI	GRCGYC	1 cut(s)	640
BstDEI	CTNAG	2 cut(s)	54, 402
BstF5I	GGATG	1 cut(s)	663
BstH2I	RGCGCY	2 cut(s)	175, 643
BstHHI	GCGC	2 cut(s)	174, 642
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 194, 368
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	1 cut(s)	352
BstV2I	GAAGAC	1 cut(s)	384
BstX2I	RGATCY	1 cut(s)	13
BstXI	CCANNNNNNTGG	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	13
Bsu36I	CCTNAGG	1 cut(s)	54
BsuI	GTATCC	1 cut(s)	274
BsuRI	GGCC	3 cut(s)	67, 539, 662
BtsCI	GGATG	1 cut(s)	663
BtsI	GCAGTG	1 cut(s)	388
BtsIMutI	CAGTG	2 cut(s)	339, 388
CfoI	GCGC	2 cut(s)	174, 642
Cfr13I	GGNCC	2 cut(s)	66, 661
CsiI	ACCWGGT	1 cut(s)	29
CviAII	CATG	4 cut(s)	76, 335, 535, 647
CviJI	RGCY	7 cut(s)	67, 188, 362, 409, 524, 539, 662
CviKI_1	RGCY	7 cut(s)	67, 188, 362, 409, 524, 539, 662
DdeI	CTNAG	2 cut(s)	54, 402
DinI	GGCGCC	1 cut(s)	641
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DraIII	CACNNNGTG	1 cut(s)	405
EaeI	YGGCCR	1 cut(s)	537
Eam1104I	CTCTTC	2 cut(s)	291, 329
EarI	CTCTTC	2 cut(s)	291, 329
Eco130I	CCWWGG	2 cut(s)	147, 610
Eco81I	CCTNAGG	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	663
EcoRII	CCWGG	1 cut(s)	29
EcoT14I	CCWWGG	2 cut(s)	147, 610
EgeI	GGCGCC	1 cut(s)	641
EheI	GGCGCC	1 cut(s)	641
ErhI	CCWWGG	2 cut(s)	147, 610
FaeI	CATG	4 cut(s)	79, 338, 538, 650
FalI	AAGNNNNNCTT	4 cut(s)	308, 340, 426, 458
FatI	CATG	4 cut(s)	75, 334, 534, 646
Fnu4HI	GCNGC	1 cut(s)	643
FokI	GGATG	1 cut(s)	670
Fsp4HI	GCNGC	1 cut(s)	643
FspBI	CTAG	5 cut(s)	17, 39, 95, 363, 378
GlaI	GCGC	2 cut(s)	173, 641
GluI	GCNGC	1 cut(s)	643
HaeII	RGCGCY	2 cut(s)	175, 643
HaeIII	GGCC	3 cut(s)	67, 539, 662
HapII	CCGG	1 cut(s)	372
HhaI	GCGC	2 cut(s)	174, 642
Hin1I	GRCGYC	1 cut(s)	640
Hin1II	CATG	4 cut(s)	79, 338, 538, 650
Hin6I	GCGC	2 cut(s)	172, 640
HinP1I	GCGC	2 cut(s)	172, 640
HpaII	CCGG	1 cut(s)	372
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188III	TCNNGA	3 cut(s)	17, 39, 215
Hpy8I	GTNNAC	1 cut(s)	268
HpyCH4III	ACNGT	3 cut(s)	343, 356, 499
HpyCH4V	TGCA	5 cut(s)	4, 86, 386, 607, 617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 194, 368
HpyF3I	CTNAG	2 cut(s)	54, 402
Hsp92I	GRCGYC	1 cut(s)	640
Hsp92II	CATG	4 cut(s)	79, 338, 538, 650
HspAI	GCGC	2 cut(s)	172, 640
KasI	GGCGCC	1 cut(s)	639
Kzo9I	GATC	1 cut(s)	13
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	2 cut(s)	151, 475
LpnPI	CCDG	7 cut(s)	16, 43, 261, 276, 372, 385, 622
LweI	GCATC	4 cut(s)	309, 457, 564, 594
MabI	ACCWGGT	1 cut(s)	29
MaeI	CTAG	5 cut(s)	17, 39, 95, 363, 378
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	7 cut(s)	134, 203, 239, 308, 316, 384, 446
MflI	RGATCY	1 cut(s)	13
MlsI	TGGCCA	1 cut(s)	539
MluCI	AATT	4 cut(s)	207, 291, 445, 619
MluNI	TGGCCA	1 cut(s)	539
Mly113I	GGCGCC	1 cut(s)	640
MmeI	TCCRAC	1 cut(s)	657
MnlI	CCTC	7 cut(s)	13, 57, 143, 292, 583, 648, 659
Mox20I	TGGCCA	1 cut(s)	539
MroXI	GAANNNNTTC	1 cut(s)	438
MscI	TGGCCA	1 cut(s)	539
MseI	TTAA	3 cut(s)	315, 347, 444
MslI	CAYNNNNRTG	1 cut(s)	612
Msp20I	TGGCCA	1 cut(s)	539
MspI	CCGG	1 cut(s)	372
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	3 cut(s)	180, 194, 368
NarI	GGCGCC	1 cut(s)	640
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	4 cut(s)	79, 338, 538, 650
NlaIV	GGNNCC	1 cut(s)	641
OliI	CACNNNNGTG	1 cut(s)	612
PciSI	GCTCTTC	1 cut(s)	329
PdmI	GAANNNNTTC	1 cut(s)	438
PflMI	CCANNNNNTGG	1 cut(s)	405
PkrI	GCNGC	1 cut(s)	644
PluTI	GGCGCC	1 cut(s)	643
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	641
PspPI	GGNCC	2 cut(s)	66, 661
PsuI	RGATCY	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	612
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	3 cut(s)	315, 347, 444
SatI	GCNGC	1 cut(s)	643
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	2 cut(s)	66, 661
ScrFI	CCNGG	1 cut(s)	31
SetI	ASST	9 cut(s)	24, 32, 265, 353, 364, 594, 612, 670, 677
SexAI	ACCWGGT	1 cut(s)	29
SfaNI	GCATC	4 cut(s)	309, 457, 564, 594
SfcI	CTRYAG	1 cut(s)	352
SfoI	GGCGCC	1 cut(s)	641
SmiMI	CAYNNNNRTG	1 cut(s)	612
SmlI	CTYRAG	1 cut(s)	547
SmoI	CTYRAG	1 cut(s)	547
SpeI	ACTAGT	1 cut(s)	94
Sse9I	AATT	4 cut(s)	207, 291, 445, 619
SsiI	CCGC	1 cut(s)	643
SspDI	GGCGCC	1 cut(s)	639
SspMI	CTAG	5 cut(s)	17, 39, 95, 363, 378
StyD4I	CCNGG	1 cut(s)	29
StyI	CCWWGG	2 cut(s)	147, 610
TaaI	ACNGT	3 cut(s)	343, 356, 499
TasI	AATT	4 cut(s)	207, 291, 445, 619
TauI	GCSGC	1 cut(s)	645
Tru1I	TTAA	3 cut(s)	315, 347, 444
Tru9I	TTAA	3 cut(s)	315, 347, 444
TscAI	CASTG	2 cut(s)	346, 388
TspDTI	ATGAA	4 cut(s)	23, 236, 240, 316
TspGWI	ACGGA	1 cut(s)	444
TspRI	CASTG	2 cut(s)	346, 388
Van91I	CCANNNNNTGG	1 cut(s)	405
XapI	RAATTY	1 cut(s)	619
XbaI	TCTAGA	2 cut(s)	16, 38
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	5 cut(s)	17, 39, 95, 363, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.