Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8081166.1

Orthogroup ID

OG0004183

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 462

Gene Structure 461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8081166.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 461 bp

atgtttgatgtctcgttttcgctgcgtcatgactttgctcgagtttgggctttggcctctgagaaactcacttctcttgagattggctacgtttcatctgtaatggtgactgaactacttagcccaaatttcaaattaccgcagtcagcaaatcgtattcagccttccatattgcctaatattcataaattgtccctttccgttgactacataactgatgccatggttggtactgtatctaaaggtctcacctccttgacccatttggatcttcgggatgcacccctcattgaaccaagagttacatttgaccttaccaactctggccttcaactgataaatcagcatggaaagttgaagcatttatcattggttcggagccaggagtttctcttcacatatttcaaacgagtaaatgatcttgggctccttttattagccgacaagtgtgaaaagatgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box LRR_6

Protein Analysis

153

Amino Acids

17.23

Weight (kDa)

7.91

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17020 AT2G17020 AT2G17020
fragaria_vesca	FvH4_2g15790 FvH4_2g15790 FvH4_2g15790 FvH4_2g15790 FvH4_2g15790
malus_domestica	MD05G1089200.v1.1 MD05G1127000.v1.1 MD10G1130200.v1.1 MD10G1130400.v1.1
prunus_persica	Prupe.8G170700_v2.0.a1 Prupe.8G170700_v2.0.a1 Prupe.8G170700_v2.0.a1 Prupe.8G170700_v2.0.a1
pyrus_communis	pycom05g12280 pycom10g11150 pycom10g11170
rosa_chinensis	RchiOBHm_Chr6g0279151
rosa_laevigata	RLG00000013161
rosa_multiflora	Rmu_co8081166.1_g000001 Rmu_sc0014203.1_g000013 Rmu_sc0014536.1_g000008
rosa_roxburghii	Rroxscaffold_7G00189070
rosa_rugosa	Rorug06G0123000 Rorug06G0123100 Rorug06G0123200
rosa_samantha	Rh6AG231600 Rh6BG236500 Rh6CG238500 Rh6DG230100
rosa_wichuraiana	Rw6G020270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	140
AclWI	GGATC	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	127
AfaI	GTAC	1 cut(s)	232
AgsI	TTSAA	5 cut(s)	133, 293, 332, 358, 406
AjnI	CCWGG	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	16, 251
AlwI	GGATC	1 cut(s)	276
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	2 cut(s)	54, 325
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	127
AsuHPI	GGTGA	2 cut(s)	118, 241
AvaI	CYCGRG	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	429
BarI	GAAGNNNNNNTAC	2 cut(s)	148, 180
BbvI	GCAGC	1 cut(s)	9
BccI	CCATC	1 cut(s)	451
BciT130I	CCWGG	1 cut(s)	383
BcoDI	GTCTC	2 cut(s)	16, 251
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	383
BmeT110I	CYCGRG	1 cut(s)	39
BmiI	GGNNCC	2 cut(s)	380, 428
BmrFI	CCNGG	1 cut(s)	383
BmsI	GCATC	2 cut(s)	208, 268
BpuEI	CTTGAG	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	283
BseMII	CTCAG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	9
BshFI	GGCC	2 cut(s)	56, 327
BsiHKCI	CYCGRG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	178
BsmAI	GTCTC	2 cut(s)	16, 251
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	2 cut(s)	56, 327
Bso31I	GGTCTC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp143I	GATC	2 cut(s)	268, 418
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	2 cut(s)	56, 327
BspCNI	CTCAG	1 cut(s)	52
BspHI	TCATGA	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	380, 428
BspPI	GGATC	1 cut(s)	276
BspTNI	GGTCTC	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	2 cut(s)	268, 418
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	398
BstDEI	CTNAG	2 cut(s)	60, 119
BstDSI	CCRYGG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	2 cut(s)	271, 421
BstMAI	GTCTC	2 cut(s)	16, 251
BstMBI	GATC	2 cut(s)	268, 418
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	9
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	56, 327
BtgI	CCRYGG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	283
CciI	TCATGA	1 cut(s)	28
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	3 cut(s)	29, 223, 347
CviJI	RGCY	9 cut(s)	50, 56, 87, 123, 163, 327, 381, 427, 440
CviKI_1	RGCY	9 cut(s)	50, 56, 87, 123, 163, 327, 381, 427, 440
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	2 cut(s)	60, 119
DpnI	GATC	2 cut(s)	270, 420
DpnII	GATC	2 cut(s)	268, 418
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	429
Eco31I	GGTCTC	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	3 cut(s)	32, 226, 350
FaiI	YATR	7 cut(s)	30, 170, 186, 212, 224, 348, 400
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	3 cut(s)	28, 222, 346
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	23
GluI	GCNGC	1 cut(s)	23
HaeIII	GGCC	2 cut(s)	56, 327
HgaI	GACGC	1 cut(s)	14
Hin1II	CATG	3 cut(s)	32, 226, 350
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HphI	GGTGA	2 cut(s)	118, 241
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	61, 378
Hpy188III	TCNNGA	3 cut(s)	29, 77, 275
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	174, 338
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	1 cut(s)	281
HpyF3I	CTNAG	2 cut(s)	60, 119
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	32, 226, 350
Kzo9I	GATC	2 cut(s)	268, 418
LmnI	GCTCC	2 cut(s)	378, 432
LpnPI	CCDG	3 cut(s)	309, 368, 395
Lsp1109I	GCAGC	1 cut(s)	9
LweI	GCATC	2 cut(s)	208, 268
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	106, 301
MalI	GATC	2 cut(s)	270, 420
MboI	GATC	2 cut(s)	268, 418
MboII	GAAGA	2 cut(s)	263, 385
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	429
MluCI	AATT	3 cut(s)	127, 134, 188
MnlI	CCTC	3 cut(s)	67, 262, 296
MspR9I	CCNGG	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	383
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	2 cut(s)	268, 418
NlaIII	CATG	3 cut(s)	32, 226, 350
NlaIV	GGNNCC	2 cut(s)	380, 428
NmuCI	GTSAC	1 cut(s)	106
PaeR7I	CTCGAG	1 cut(s)	39
PagI	TCATGA	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	380, 428
PspXI	VCTCGAGB	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	2 cut(s)	268, 418
ScrFI	CCNGG	1 cut(s)	383
SduI	GDGCHC	1 cut(s)	429
SetI	ASST	4 cut(s)	93, 247, 254, 315
SfaNI	GCATC	2 cut(s)	208, 268
Sfr274I	CTCGAG	1 cut(s)	39
SlaI	CTCGAG	1 cut(s)	39
SmlI	CTYRAG	2 cut(s)	39, 77
SmoI	CTYRAG	2 cut(s)	39, 77
Sse9I	AATT	3 cut(s)	127, 134, 188
SsiI	CCGC	1 cut(s)	140
SspI	AATATT	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	40
TasI	AATT	3 cut(s)	127, 134, 188
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	2 cut(s)	84, 173
TspGWI	ACGGA	1 cut(s)	190
XapI	RAATTY	1 cut(s)	127
XhoI	CTCGAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.