pycom10g11170

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0004183
Physical Location & Seq
Reverse (-)
14710784 .. 14711647
864 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g11170.1

Sequence Viewer

Length: 864 bp
ATGGTGACTGAACTACTTTGCCCAAATTTTGAATCCCATCAGTCATCAAACCGTATTCAGCCTTCAATATTGCCAAACATTCACAAATTGTACCTTTCAGTTGACTATATAACTGATGCTATGTGTGGAACGATTTCTAAAGGTCTCCTGTCCCTCACCCATTTGGATCTTAGAGATGCACCCCTCATAGAACCAAGAGTTTCATTTGACCTTACAAACTCTGGCCTTCAACAGATTAATCAGCATGGGAAGTTGAAGCATCTCTCATTGGTTAGGAGGCAGGAGTATGTCATTACCTATTTTAGAAGAGTAAATGATCTTGGGCTCCTCTTATTAGCTGACAAGTGTAAAAACATGGAAAGCATATTTCTCAGTGGCTTCTGTCGTGTTACAGACACAGGTTTCAAAACGATCCTGCATTCTTGCTCCAAATTATATAAGCTTAGGGTGTCTCATGGGACTCAGTTAACCGATTTGGTTTTTCATGACATTTCTGCAACTTCCCTTTCTTTAACGCATGTTAGCTTGAGGCGATGCACTCTTTTAACCAACCATGCAGCGACTAGTTTGGCGTCTAACAAGGATCTGGAAGTTTTGGATTTGAGAGATTGCAGAAACCTCGGGGATGAATCCCTCCGAGCCATAAGCACTCTTCCAAAAGTAAAGACATTGTTGCTAGATGGCTCTGATATTAGTGATGTGGGATTATCATATTTGAGACCAGTGGTTATAAGTTCACTAATTTCATTGTCTGTTAGAGGATGCAAGAAACTTACGGATAAATGTATCTCTGCTCTATTTGATGGCTCTTCCAAGTTGGAGTTGCAAGAATTAGACTTGTCCAATCTTCCTTATCTCCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_6

Protein Analysis

288

Amino Acids

32.03

Weight (kDa)

8.53

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 13 - 285 1.9e-74 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 731
AclWI GGATC 3 cut(s) 174, 406, 591
AcsI RAATTY 1 cut(s) 25
AcyI GRCGYC 1 cut(s) 572
AfaI GTAC 1 cut(s) 92
AgsI TTSAA 5 cut(s) 32, 66, 230, 256, 406
AhlI ACTAGT 1 cut(s) 563
AluBI AGCT 3 cut(s) 338, 442, 525
AluI AGCT 3 cut(s) 338, 442, 525
Alw26I GTCTC 3 cut(s) 149, 456, 712
AlwI GGATC 3 cut(s) 174, 406, 591
Ama87I CYCGRG 1 cut(s) 620
AoxI GGCC 1 cut(s) 223
ApeKI GCWGC 1 cut(s) 557
ApoI RAATTY 1 cut(s) 25
AseI ATTAAT 1 cut(s) 237
Asp700I GAANNNNTTC 1 cut(s) 133
AsuHPI GGTGA 2 cut(s) 16, 148
AvaI CYCGRG 1 cut(s) 620
BanII GRGCYC 1 cut(s) 327
BarI GAAGNNNNNNTAC 2 cut(s) 46, 78
BbvI GCAGC 1 cut(s) 569
BccI CCATC 3 cut(s) 45, 674, 797
BcgI CGANNNNNNTGC 2 cut(s) 601, 635
BcoDI GTCTC 3 cut(s) 149, 456, 712
BcuI ACTAGT 1 cut(s) 563
BfaI CTAG 2 cut(s) 564, 677
BisI GCNGC 1 cut(s) 558
BlsI GCNGC 1 cut(s) 559
BmeT110I CYCGRG 1 cut(s) 620
BmiI GGNNCC 1 cut(s) 326
BmsI GCATC 5 cut(s) 106, 166, 268, 524, 752
Bpu10I CCTNAGC 1 cut(s) 443
BpuEI CTTGAG 1 cut(s) 547
BsaHI GRCGYC 1 cut(s) 572
BsaI GGTCTC 2 cut(s) 149, 712
BsaJI CCNNGG 1 cut(s) 619
Bse1I ACTGG 1 cut(s) 722
BseDI CCNNGG 1 cut(s) 619
BseGI GGATG 2 cut(s) 631, 767
BseMII CTCAG 2 cut(s) 385, 476
BseNI ACTGG 1 cut(s) 722
BseRI GAGGAG 1 cut(s) 317
BseXI GCAGC 1 cut(s) 569
BshFI GGCC 1 cut(s) 225
BsiHKCI CYCGRG 1 cut(s) 620
BslFI GGGAC 2 cut(s) 136, 472
BsmAI GTCTC 3 cut(s) 149, 456, 712
BsmFI GGGAC 2 cut(s) 136, 472
BsmI GAATGC 1 cut(s) 418
BsnI GGCC 1 cut(s) 225
Bso31I GGTCTC 2 cut(s) 149, 712
BsoBI CYCGRG 1 cut(s) 620
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 4 cut(s) 166, 316, 411, 583
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 2 cut(s) 384, 475
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 1 cut(s) 326
BspPI GGATC 3 cut(s) 174, 406, 591
BspQI GCTCTTC 1 cut(s) 814
BspTNI GGTCTC 2 cut(s) 149, 712
BsrI ACTGG 1 cut(s) 722
BssECI CCNNGG 1 cut(s) 619
BssMI GATC 4 cut(s) 166, 316, 411, 583
BssNI GRCGYC 1 cut(s) 572
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 3 cut(s) 301, 657, 814
BstACI GRCGYC 1 cut(s) 572
BstDEI CTNAG 4 cut(s) 170, 371, 443, 462
BstF5I GGATG 2 cut(s) 631, 767
BstKTI GATC 4 cut(s) 169, 319, 414, 586
BstMAI GTCTC 3 cut(s) 149, 456, 712
BstMBI GATC 4 cut(s) 166, 316, 411, 583
BstNSI RCATGY 1 cut(s) 521
BstV1I GCAGC 1 cut(s) 569
BstX2I RGATCY 2 cut(s) 166, 583
BstYI RGATCY 2 cut(s) 166, 583
BsuRI GGCC 1 cut(s) 225
BtgZI GCGATG 1 cut(s) 547
BtsCI GGATG 2 cut(s) 631, 767
BtsIMutI CAGTG 2 cut(s) 379, 729
CciI TCATGA 1 cut(s) 484
CseI GACGC 1 cut(s) 561
Csp6I GTAC 1 cut(s) 91
CviAII CATG 6 cut(s) 245, 355, 455, 485, 518, 554
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 4 cut(s) 170, 371, 443, 462
DpnI GATC 4 cut(s) 168, 318, 413, 585
DpnII GATC 4 cut(s) 166, 316, 411, 583
Eam1104I CTCTTC 3 cut(s) 301, 657, 814
EarI CTCTTC 3 cut(s) 301, 657, 814
Eco24I GRGCYC 1 cut(s) 327
Eco31I GGTCTC 2 cut(s) 149, 712
Eco88I CYCGRG 1 cut(s) 620
EcoT38I GRGCYC 1 cut(s) 327
FaeI CATG 6 cut(s) 248, 358, 458, 488, 521, 557
FaqI GGGAC 2 cut(s) 136, 472
FatI CATG 6 cut(s) 244, 354, 454, 484, 517, 553
Fnu4HI GCNGC 1 cut(s) 558
FokI GGATG 2 cut(s) 638, 774
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 1 cut(s) 558
FspBI CTAG 2 cut(s) 564, 677
GluI GCNGC 1 cut(s) 558
HaeIII GGCC 1 cut(s) 225
HgaI GACGC 1 cut(s) 561
Hin1I GRCGYC 1 cut(s) 572
Hin1II CATG 6 cut(s) 248, 358, 458, 488, 521, 557
HincII GTYRAC 2 cut(s) 103, 468
HindII GTYRAC 2 cut(s) 103, 468
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 3 cut(s) 32, 460, 629
HpaI GTTAAC 1 cut(s) 468
HphI GGTGA 2 cut(s) 16, 148
Hpy166II GTNNAC 3 cut(s) 103, 468, 737
Hpy188I TCNGA 3 cut(s) 638, 688, 860
Hpy188III TCNNGA 2 cut(s) 485, 587
Hpy8I GTNNAC 3 cut(s) 103, 468, 737
HpyAV CCTTC 2 cut(s) 72, 236
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 8 cut(s) 179, 418, 497, 537, 557, 612, 765, 826
HpyF3I CTNAG 4 cut(s) 170, 371, 443, 462
Hsp92I GRCGYC 1 cut(s) 572
Hsp92II CATG 6 cut(s) 248, 358, 458, 488, 521, 557
KspAI GTTAAC 1 cut(s) 468
Kzo9I GATC 4 cut(s) 166, 316, 411, 583
LguI GCTCTTC 1 cut(s) 814
LmnI GCTCC 2 cut(s) 330, 431
LpnPI CCDG 7 cut(s) 161, 207, 266, 384, 428, 572, 735
Lsp1109I GCAGC 1 cut(s) 569
LweI GCATC 5 cut(s) 106, 166, 268, 524, 752
MaeI CTAG 2 cut(s) 564, 677
MaeIII GTNAC 2 cut(s) 4, 388
MalI GATC 4 cut(s) 168, 318, 413, 585
MboI GATC 4 cut(s) 166, 316, 411, 583
MboII GAAGA 4 cut(s) 318, 644, 801, 839
MflI RGATCY 2 cut(s) 166, 583
MhlI GDGCHC 1 cut(s) 327
MluCI AATT 5 cut(s) 25, 86, 431, 741, 830
MlyI GAGTC 1 cut(s) 454
MmeI TCCRAC 1 cut(s) 798
MnlI CCTC 8 cut(s) 164, 194, 270, 338, 522, 629, 644, 752
MroXI GAANNNNTTC 1 cut(s) 133
MseI TTAA 4 cut(s) 237, 467, 512, 545
Mva1269I GAATGC 1 cut(s) 418
NdeII GATC 4 cut(s) 166, 316, 411, 583
NlaIII CATG 6 cut(s) 248, 358, 458, 488, 521, 557
NlaIV GGNNCC 1 cut(s) 326
NmuCI GTSAC 1 cut(s) 4
NspI RCATGY 1 cut(s) 521
PagI TCATGA 1 cut(s) 484
PciSI GCTCTTC 1 cut(s) 814
PctI GAATGC 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 133
PfeI GAWTC 2 cut(s) 32, 629
PkrI GCNGC 1 cut(s) 559
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
PshBI ATTAAT 1 cut(s) 237
PsiI TTATAA 1 cut(s) 731
PspN4I GGNNCC 1 cut(s) 326
PsuI RGATCY 2 cut(s) 166, 583
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SapI GCTCTTC 1 cut(s) 814
SaqAI TTAA 4 cut(s) 237, 467, 512, 545
SatI GCNGC 1 cut(s) 558
Sau3AI GATC 4 cut(s) 166, 316, 411, 583
SchI GAGTC 1 cut(s) 454
SduI GDGCHC 1 cut(s) 327
SetI ASST 9 cut(s) 96, 145, 213, 299, 340, 403, 444, 527, 621
SfaNI GCATC 5 cut(s) 106, 166, 268, 524, 752
SmlI CTYRAG 1 cut(s) 526
SmoI CTYRAG 1 cut(s) 526
SpeI ACTAGT 1 cut(s) 563
Sse9I AATT 5 cut(s) 25, 86, 431, 741, 830
SspI AATATT 1 cut(s) 69
SspMI CTAG 2 cut(s) 564, 677
TaaI ACNGT 1 cut(s) 53
TasI AATT 5 cut(s) 25, 86, 431, 741, 830
TfiI GAWTC 2 cut(s) 32, 629
Tru1I TTAA 4 cut(s) 237, 467, 512, 545
Tru9I TTAA 4 cut(s) 237, 467, 512, 545
TscAI CASTG 2 cut(s) 379, 729
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 1 cut(s) 557
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 4 cut(s) 192, 473, 642, 735
TspGWI ACGGA 1 cut(s) 791
TspRI CASTG 2 cut(s) 379, 729
VspI ATTAAT 1 cut(s) 237
XapI RAATTY 1 cut(s) 25
XceI RCATGY 1 cut(s) 521
XmnI GAANNNNTTC 1 cut(s) 133
XspI CTAG 2 cut(s) 564, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.