pycom10g11150

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0004183
Physical Location & Seq
Reverse (-)
14690026 .. 14691024
999 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 948 bp
ATGATCTGGCTCCTCTTATTGGCTGACAAGTGCAAAAACATGGAAATCATATTTCTAAGTGGCTTCTGTCGTGTTACAGACAGGTTTCAAAACGATCCTGCGTTCTTGCTCCAATTATATAAGCTTAGGGTGTCTCATGGGACTCAGTTAATCGATTTGGTTTTTCATGACATTTCTGCAACTTCCCTTTCTTTAACACATGTTAGCTTGAGACGGTGCACTCTTTTAACCAGCCATGCAGTGACTAGGTTGGTGTCTAACAAGGATCTGGAAGTTTTGGATTTGAGAGATTGCAGAAACCTCGGGGATGAATCCCTCCGAGCCACAAGCACTCTTCCAAAAGTAAAGACATTGTTGCTAGATTGCTCTGATATTAGTGATGTGGGATTATTGTATTTGAGACCAGTGGTTATAAGTTCACTAATTTCATTGTCTGTTAGAGGATGCAAGAAACTTACGGATAATTACTTGTCCAATCTTCCTAATCTCTCCGATAATGCAGTTTTATTACTGGCAAAGAGTAGGATTCCGCTACTTGAACTGCGCATGCGGCAATGCCCACTCATAGGTGACACTGTAGTAATGGCATTAGCATCTATGCAAGTTGACGAGGAGAGGTGGCATGGTAACTGCTTAAGGTTGTTGGATCTGTTTAATTGTGGTGGGATTACCCCGCTTTCGTTTTGGTGGTTGAAGAAACCATATTTTCCAAGGCTGAGATGGTTGGGCGTTACGGGTAGTGTAAATAGAGATATGGTAGATGCTTTGGCTCCAAGTAGACCGTTCTTGCATGTTTCATGCCGTGGTGAGGAGCTGGGAGTTCAGCAAGGGGATACTGCCGATGATGTTTACATGCACGACTTTGATGAGATGGACGACCTTGAACAGTGGCTTGCAGAAGATGACTATGTTGATGACGATATGGTGAACGCAGAGGCAGTGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_6

Protein Analysis

316

Amino Acids

35.63

Weight (kDa)

5.09

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 4 - 274 1.9e-44 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 413
Acc16I TGCGCA 1 cut(s) 545
AccI GTMKAC 1 cut(s) 778
AciI CCGC 3 cut(s) 530, 550, 674
AclWI GGATC 3 cut(s) 89, 273, 654
AfiI CCNNNNNNNGG 3 cut(s) 19, 566, 808
AflII CTTAAG 1 cut(s) 634
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 4 cut(s) 89, 539, 694, 884
AluBI AGCT 3 cut(s) 124, 207, 814
AluI AGCT 3 cut(s) 124, 207, 814
Alw21I GWGCWC 1 cut(s) 221
Alw26I GTCTC 3 cut(s) 138, 205, 394
Alw44I GTGCAC 1 cut(s) 217
AlwI GGATC 3 cut(s) 89, 273, 654
Ama87I CYCGRG 1 cut(s) 302
ApaLI GTGCAC 1 cut(s) 217
AspLEI GCGC 1 cut(s) 546
AsuHPI GGTGA 3 cut(s) 581, 818, 937
AvaI CYCGRG 1 cut(s) 302
BaeGI GKGCMC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 221
BccI CCATC 2 cut(s) 714, 865
BceAI ACGGC 1 cut(s) 786
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciVI GTATCC 1 cut(s) 826
BcoDI GTCTC 3 cut(s) 138, 205, 394
BfaI CTAG 2 cut(s) 246, 359
BfmI CTRYAG 1 cut(s) 576
BfrI CTTAAG 1 cut(s) 634
BfuI GTATCC 1 cut(s) 826
BisI GCNGC 1 cut(s) 551
BlsI GCNGC 1 cut(s) 552
BmeT110I CYCGRG 1 cut(s) 302
BmiI GGNNCC 2 cut(s) 11, 771
BmsI GCATC 3 cut(s) 434, 602, 751
Bpu10I CCTNAGC 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 229
Bsa29I ATCGAT 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 394
BsaJI CCNNGG 3 cut(s) 301, 710, 802
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 566, 808
Bse1I ACTGG 2 cut(s) 404, 516
Bse3DI GCAATG 1 cut(s) 560
BseCI ATCGAT 1 cut(s) 153
BseDI CCNNGG 3 cut(s) 301, 710, 802
BseGI GGATG 2 cut(s) 313, 449
BseLI CCNNNNNNNGG 3 cut(s) 19, 566, 808
BseMI GCAATG 1 cut(s) 560
BseMII CTCAG 2 cut(s) 158, 707
BseNI ACTGG 2 cut(s) 404, 516
BseRI GAGGAG 2 cut(s) 626, 824
BseSI GKGCMC 1 cut(s) 221
BseYI CCCAGC 1 cut(s) 814
BshVI ATCGAT 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 302
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 3 cut(s) 19, 566, 808
BsmAI GTCTC 3 cut(s) 138, 205, 394
BsmBI CGTCTC 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 154
Bso31I GGTCTC 1 cut(s) 394
BsoBI CYCGRG 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 221
Bsp143I GATC 4 cut(s) 3, 94, 265, 646
BspACI CCGC 3 cut(s) 530, 550, 674
BspCNI CTCAG 2 cut(s) 157, 708
BspDI ATCGAT 1 cut(s) 153
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 2 cut(s) 11, 771
BspPI GGATC 3 cut(s) 89, 273, 654
BspTI CTTAAG 1 cut(s) 634
BspTNI GGTCTC 1 cut(s) 394
BsrDI GCAATG 1 cut(s) 560
BsrI ACTGG 2 cut(s) 404, 516
BssECI CCNNGG 3 cut(s) 301, 710, 802
BssMI GATC 4 cut(s) 3, 94, 265, 646
BssT1I CCWWGG 1 cut(s) 710
Bst4CI ACNGT 4 cut(s) 216, 577, 783, 888
Bst6I CTCTTC 1 cut(s) 339
BstAFI CTTAAG 1 cut(s) 634
BstC8I GCNNGC 2 cut(s) 548, 894
BstDEI CTNAG 4 cut(s) 56, 125, 144, 716
BstDSI CCRYGG 1 cut(s) 802
BstF5I GGATG 2 cut(s) 313, 449
BstHHI GCGC 1 cut(s) 546
BstKTI GATC 4 cut(s) 6, 97, 268, 649
BstMAI GTCTC 3 cut(s) 138, 205, 394
BstMBI GATC 4 cut(s) 3, 94, 265, 646
BstMWI GCNNNNNNNGC 1 cut(s) 550
BstNSI RCATGY 4 cut(s) 203, 550, 794, 856
BstSFI CTRYAG 1 cut(s) 576
BstSLI GKGCMC 1 cut(s) 221
BstX2I RGATCY 2 cut(s) 265, 646
BstYI RGATCY 2 cut(s) 265, 646
Bsu15I ATCGAT 1 cut(s) 153
BsuI GTATCC 1 cut(s) 826
BsuTUI ATCGAT 1 cut(s) 153
BtgI CCRYGG 1 cut(s) 802
BtsCI GGATG 2 cut(s) 313, 449
BtsI GCAGTG 2 cut(s) 246, 945
BtsIMutI CAGTG 5 cut(s) 246, 411, 573, 893, 945
Cac8I GCNNGC 2 cut(s) 548, 894
CciI TCATGA 1 cut(s) 166
CfoI GCGC 1 cut(s) 546
ClaI ATCGAT 1 cut(s) 153
DdeI CTNAG 4 cut(s) 56, 125, 144, 716
DpnI GATC 4 cut(s) 5, 96, 267, 648
DpnII GATC 4 cut(s) 3, 94, 265, 646
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 710
Eco31I GGTCTC 1 cut(s) 394
Eco88I CYCGRG 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 710
ErhI CCWWGG 1 cut(s) 710
Esp3I CGTCTC 1 cut(s) 205
FaqI GGGAC 1 cut(s) 154
FauI CCCGC 1 cut(s) 681
FblI GTMKAC 1 cut(s) 778
Fnu4HI GCNGC 1 cut(s) 551
FokI GGATG 2 cut(s) 320, 456
Fsp4HI GCNGC 1 cut(s) 551
FspBI CTAG 2 cut(s) 246, 359
FspI TGCGCA 1 cut(s) 545
GlaI GCGC 1 cut(s) 545
GluI GCNGC 1 cut(s) 551
GsaI CCCAGC 1 cut(s) 818
HhaI GCGC 1 cut(s) 546
Hin6I GCGC 1 cut(s) 544
HinP1I GCGC 1 cut(s) 544
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 3 cut(s) 142, 311, 526
HphI GGTGA 3 cut(s) 581, 818, 937
Hpy166II GTNNAC 6 cut(s) 219, 419, 607, 779, 850, 928
Hpy188I TCNGA 3 cut(s) 320, 370, 493
Hpy188III TCNNGA 2 cut(s) 167, 269
Hpy8I GTNNAC 6 cut(s) 219, 419, 607, 779, 850, 928
HpyCH4III ACNGT 4 cut(s) 216, 577, 783, 888
HpyF10VI GCNNNNNNNGC 1 cut(s) 550
HpyF3I CTNAG 4 cut(s) 56, 125, 144, 716
HspAI GCGC 1 cut(s) 544
Kzo9I GATC 4 cut(s) 3, 94, 265, 646
LmnI GCTCC 4 cut(s) 15, 114, 775, 811
LpnPI CCDG 7 cut(s) 67, 111, 244, 254, 417, 497, 800
LweI GCATC 3 cut(s) 434, 602, 751
MaeI CTAG 2 cut(s) 246, 359
MaeIII GTNAC 5 cut(s) 73, 241, 569, 626, 730
MalI GATC 4 cut(s) 5, 96, 267, 648
MboI GATC 4 cut(s) 3, 94, 265, 646
MboII GAAGA 4 cut(s) 326, 470, 706, 911
MflI RGATCY 2 cut(s) 265, 646
MhlI GDGCHC 1 cut(s) 221
MluCI AATT 4 cut(s) 113, 423, 463, 655
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 624
MnlI CCTC 8 cut(s) 23, 311, 326, 434, 604, 609, 802, 928
MseI TTAA 5 cut(s) 149, 194, 227, 635, 654
MspCI CTTAAG 1 cut(s) 634
MwoI GCNNNNNNNGC 1 cut(s) 550
NdeII GATC 4 cut(s) 3, 94, 265, 646
NlaIV GGNNCC 2 cut(s) 11, 771
NmuCI GTSAC 2 cut(s) 241, 569
NsbI TGCGCA 1 cut(s) 545
NspI RCATGY 4 cut(s) 203, 550, 794, 856
PaeI GCATGC 1 cut(s) 550
PagI TCATGA 1 cut(s) 166
PciI ACATGT 1 cut(s) 199
PfeI GAWTC 2 cut(s) 311, 526
PkrI GCNGC 1 cut(s) 552
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PscI ACATGT 1 cut(s) 199
PsiI TTATAA 1 cut(s) 413
PspFI CCCAGC 1 cut(s) 814
PspN4I GGNNCC 2 cut(s) 11, 771
PsuI RGATCY 2 cut(s) 265, 646
SaqAI TTAA 5 cut(s) 149, 194, 227, 635, 654
SatI GCNGC 1 cut(s) 551
Sau3AI GATC 4 cut(s) 3, 94, 265, 646
SchI GAGTC 1 cut(s) 136
SduI GDGCHC 1 cut(s) 221
SfaNI GCATC 3 cut(s) 434, 602, 751
SfcI CTRYAG 1 cut(s) 576
SmlI CTYRAG 2 cut(s) 208, 634
SmoI CTYRAG 2 cut(s) 208, 634
SphI GCATGC 1 cut(s) 550
Sse9I AATT 4 cut(s) 113, 423, 463, 655
SsiI CCGC 3 cut(s) 530, 550, 674
SspMI CTAG 2 cut(s) 246, 359
StyI CCWWGG 1 cut(s) 710
TaaI ACNGT 4 cut(s) 216, 577, 783, 888
TaqI TCGA 1 cut(s) 153
TasI AATT 4 cut(s) 113, 423, 463, 655
TauI GCSGC 1 cut(s) 553
TfiI GAWTC 2 cut(s) 311, 526
Tru1I TTAA 5 cut(s) 149, 194, 227, 635, 654
Tru9I TTAA 5 cut(s) 149, 194, 227, 635, 654
TscAI CASTG 5 cut(s) 246, 411, 580, 893, 945
TseFI GTSAC 2 cut(s) 241, 569
Tsp45I GTSAC 2 cut(s) 241, 569
TspDTI ATGAA 4 cut(s) 155, 324, 417, 786
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 5 cut(s) 246, 411, 580, 893, 945
Vha464I CTTAAG 1 cut(s) 634
VneI GTGCAC 1 cut(s) 217
XceI RCATGY 4 cut(s) 203, 550, 794, 856
XcmI CCANNNNNNNNNTGG 1 cut(s) 717
XmiI GTMKAC 1 cut(s) 778
XspI CTAG 2 cut(s) 246, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.