pycom10g11920

Bromodomain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
15501526 .. 15505770
4245 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g11920.2

Sequence Viewer

Length: 2094 bp
ATGGGTAAGGTAGTGGAAAGGAAGAAGAAGAAGAAAGGACGGCCCTCTCTTTTGGATCTTCAAAAACGGACTCTCAGAGAGCAGCAGGAGCAATTACAACACCAGCACCAGAAGCGAAAGCCCAATTCTGCCCCTCATTCCAACCCTAATTACAGGACTGCCCCTACAGAATCCGCCCACGCTGCCGTCCGGCGATCCACCCGCCGCAACCCTAACCCCGACGGCAATTCCAACGACGAGGACGAGGAAGAGGACGAAGACGACGCCGTTTCGGCCGGGAATCGCCGCGAGAAAAAACTCAAGCTCGTCCTCAAATTGCCCTTCGGCAATCAGAAACAGTCGGCCAATTCCGCGTCTCGGAACTCCCCCGGCGTTGGCTCCGAGTCCAACGCCGACGACGATGGCAAAGACAGAACCGACCGGAAGCGCAAGATCAATGCGATCGGCTATGGATCTGGACTCGCTCACCCTCAAAAGGGTGAGAAGTCAATTCCTGCTACAAACCCACCAAGCAGCCTACGAGGAGGGAGAACAACGTTGGACTCTGGACCCTCTACCCCTTTGCCTGATAAAAATTTGCTGCTGTTCGTTCTCGACAGGCTCCAAAAGAAGGACGCGTACGGTGTGTTTTCTGAACCAGTGGACCCCAAAGAGCTTCCGGACTACCATGAAGTAATAGAGCACCCTATGGATTTCGGGACGGTGAAGAAGAAACTTACGAGTGGAATCTACTCCAGTTTGGAACAGTTTGAGGATGATATTTTCTTAATCTGCTCCAATGCGATGCAGTACAATGCCCCAGATACCATATATTTTCGACAGGCACGCTCAATACATGAGCTTGCGAAAAAGAATTTTGAAAATTTGAGGCAAGATAGTGATGATAATGAACCAGGACCAAAGGTCGTAAGAAGAGGCAGACCACCAACAAAAAATTTGCCAAAGAAATTGGGCAGGCCTTCCTTGGACCGTGCTGGTTCAGAGGTCTCAGATGCCACTCATGCTACTGGGGCTGAAAACACCACATTGGATCCTAGAAAAGGATCTCTTCTTTCAGACAAGTCTGGTTTGGCGGGTTTGCGGAATAATGATGTTTATACTAATTGGTTGACGGATAACAAATTTGAGAGGAATGATGATGTCACAGGTTCCACAAGGGGTAATTCGAAGCTTGGGAAAAAACAATTTGTGTTTGATGAGAACAGGCGTAATACATATAATCAATCTCATCCTTCAGTCAGTGGACGAGAGTCATCTGTATTGACTACATTTGATGGAGAAAGGAAACAGCTGATGGCTGTAGGACTTCACTCAGACTATGGTTATGCAAGGAGCCTGGCTCGATTTGCTGCAAATCTTGGAGCTGCAGCTTGGAACATTGCCGCAAAGAAGATCGAAAGGCCTTTGCCCCCTGGTGTTAAGTTCGGCCCAGGGTGGGTTGGAGAAAATGATGTTGCGTCACATAGGCCACTGTTATTAGCCTCAGCCTCACTAGAGAAGTTGTTGGGACATAACTCATCAAAGAAGCCATCGGGACATAACTCATCGGAGAAGTATGTGCCTTCTATTCCTTCAGCACTGGATGACAATACAAGCAGTTCTCTTCCTCTGTCTGCTGCTACCTTATCACCCCCCATTGTTGCTAATAAATCTCCTGAACCCCTCCCTGGAAAAGTAGAAACTGCTGTAGGATCAAACACTCGTACTGGGTTTAATATGCTGAGCAGCAATCCTGGTGTAATGAGGCCGAGGCCTCCATTTCAGATCCATCAGAATTCCGTATTCCAACCTGGGATCAACGGATTTAATGGCGCAAACGGATTAAACATTCCTGCTCAGATGAGAAAGCTAGTTGGAGCGGCAAGGCCCGGTGGTTTTAACTTCCAGTCGCCTCAAATGCTTGATGAGGTCTCTAGGACTAATGCTAACTTCCATTCAGCTACTTCAAACAGCTTAACTTCGGAAGAAACTAAACTCTCTGAAACTCCAGGTACGATAAACTCTTCCCCTTCATTACTAAGTCCAGTGAATGAGGCAATGGCAGCACGGACAACGGGGACTCATACCCGCCCATCTTGGCAAGGATTGTCGTAA

Protein Analysis

698

Amino Acids

76.07

Weight (kDa)

9.58

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1859
AccII CGCG 3 cut(s) 288, 353, 617
AccIII TCCGGA 1 cut(s) 658
AclI AACGTT 1 cut(s) 536
AclWI GGATC 9 cut(s) 63, 189, 460, 1025, 1038, 1051, 1699, 1759, 1802
AcoI YGGCCR 2 cut(s) 273, 342
AcsI RAATTY 6 cut(s) 574, 853, 862, 934, 1121, 1774
AcuI CTGAAG 2 cut(s) 1218, 1557
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 4 cut(s) 620, 791, 1705, 1993
AfiI CCNNNNNNNGG 8 cut(s) 357, 374, 475, 476, 610, 1040, 1435, 1667
AflIII ACRYGT 1 cut(s) 615
AgsI TTSAA 3 cut(s) 62, 860, 1947
AhdI GACNNNNNGTC 1 cut(s) 902
AjnI CCWGG 8 cut(s) 892, 1335, 1411, 1429, 1666, 1732, 1789, 1987
Alw21I GWGCWC 1 cut(s) 684
Alw26I GTCTC 3 cut(s) 360, 991, 1915
AlwI GGATC 9 cut(s) 63, 189, 460, 1025, 1038, 1051, 1699, 1759, 1802
Aor13HI TCCGGA 1 cut(s) 658
ApoI RAATTY 6 cut(s) 574, 853, 862, 934, 1121, 1774
AspLEI GCGC 2 cut(s) 429, 1814
AspS9I GGNCC 7 cut(s) 42, 548, 643, 896, 967, 1427, 1866
AsuC2I CCSGG 3 cut(s) 277, 369, 1869
AsuHPI GGTGA 4 cut(s) 458, 491, 715, 1620
AsuII TTCGAA 1 cut(s) 1166
AvaII GGWCC 4 cut(s) 548, 643, 896, 967
BamHI GGATCC 1 cut(s) 1030
BarI GAAGNNNNNNTAC 2 cut(s) 602, 634
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 684
BbvCI CCTCAGC 1 cut(s) 1483
BccI CCATC 6 cut(s) 395, 1268, 1288, 1537, 1776, 2080
BceAI ACGGC 4 cut(s) 56, 170, 238, 251
BciT130I CCWGG 8 cut(s) 894, 1337, 1413, 1431, 1668, 1734, 1791, 1989
BcnI CCSGG 3 cut(s) 277, 369, 1869
BcoDI GTCTC 3 cut(s) 360, 991, 1915
BfaI CTAG 4 cut(s) 1035, 1493, 1850, 1914
BfmI CTRYAG 4 cut(s) 165, 1299, 1365, 1686
BglI GCCNNNNNGGC 1 cut(s) 272
BlpI GCTNAGC 1 cut(s) 1721
Bme18I GGWCC 4 cut(s) 548, 643, 896, 967
BmeRI GACNNNNNGTC 1 cut(s) 902
BmgT120I GGNCC 7 cut(s) 42, 548, 643, 896, 967, 1427, 1866
BmiI GGNNCC 7 cut(s) 379, 550, 602, 645, 1032, 1150, 1334
BmrI ACTGGG 2 cut(s) 1017, 1716
BmsI GCATC 2 cut(s) 774, 982
BmuI ACTGGG 2 cut(s) 1017, 1716
BoxI GACNNNNGTC 1 cut(s) 1249
BpiI GAAGAC 1 cut(s) 264
BplI GAGNNNNNCTC 2 cut(s) 1324, 1356
BpmI CTGGAG 2 cut(s) 718, 1971
Bpu10I CCTNAGC 1 cut(s) 1483
Bpu1102I GCTNAGC 1 cut(s) 1721
Bpu14I TTCGAA 1 cut(s) 1166
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 3 cut(s) 277, 369, 1869
BsaHI GRCGYC 1 cut(s) 264
BsaI GGTCTC 2 cut(s) 991, 1915
BsaJI CCNNGG 8 cut(s) 367, 963, 1411, 1429, 1430, 1666, 1748, 1790
BsaWI WCCGGW 2 cut(s) 420, 658
Bsc4I CCNNNNNNNGG 8 cut(s) 357, 374, 475, 476, 610, 1040, 1435, 1667
Bse1I ACTGG 7 cut(s) 638, 735, 1012, 1584, 1711, 1885, 2024
Bse3DI GCAATG 2 cut(s) 1377, 2043
BseAI TCCGGA 1 cut(s) 658
BseBI CCWGG 8 cut(s) 894, 1337, 1413, 1431, 1668, 1734, 1791, 1989
BseDI CCNNGG 8 cut(s) 367, 963, 1411, 1429, 1430, 1666, 1748, 1790
BseGI GGATG 3 cut(s) 760, 1228, 1588
BseLI CCNNNNNNNGG 8 cut(s) 357, 374, 475, 476, 610, 1040, 1435, 1667
BseMI GCAATG 2 cut(s) 1377, 2043
BseMII CTCAG 6 cut(s) 88, 1002, 1326, 1497, 1712, 1850
BseNI ACTGG 7 cut(s) 638, 735, 1012, 1584, 1711, 1885, 2024
BseRI GAGGAG 1 cut(s) 537
BseX3I CGGCCG 1 cut(s) 273
Bsh1236I CGCG 3 cut(s) 288, 353, 617
Bsh1285I CGRYCG 3 cut(s) 276, 421, 444
BsiEI CGRYCG 3 cut(s) 276, 421, 444
BsiHKAI GWGCWC 1 cut(s) 684
BsiSI CCGG 6 cut(s) 190, 276, 369, 421, 659, 1869
BsiWI CGTACG 1 cut(s) 618
BslFI GGGAC 4 cut(s) 712, 1521, 1548, 2071
BslI CCNNNNNNNGG 8 cut(s) 357, 374, 475, 476, 610, 1040, 1435, 1667
BsmAI GTCTC 3 cut(s) 360, 991, 1915
BsmBI CGTCTC 1 cut(s) 360
BsmFI GGGAC 4 cut(s) 712, 1521, 1548, 2071
Bso31I GGTCTC 2 cut(s) 991, 1915
Bsp119I TTCGAA 1 cut(s) 1166
Bsp1286I GDGCHC 1 cut(s) 684
Bsp13I TCCGGA 1 cut(s) 658
Bsp1720I GCTNAGC 1 cut(s) 1721
BspCNI CTCAG 6 cut(s) 87, 1001, 1325, 1496, 1713, 1849
BspEI TCCGGA 1 cut(s) 658
BspFNI CGCG 3 cut(s) 288, 353, 617
BspLI GGNNCC 7 cut(s) 379, 550, 602, 645, 1032, 1150, 1334
BspMAI CTGCAG 1 cut(s) 1369
BspPI GGATC 9 cut(s) 63, 189, 460, 1025, 1038, 1051, 1699, 1759, 1802
BspT104I TTCGAA 1 cut(s) 1166
BspTNI GGTCTC 2 cut(s) 991, 1915
BsrBI CCGCTC 1 cut(s) 1859
BsrDI GCAATG 2 cut(s) 1377, 2043
BsrI ACTGG 7 cut(s) 638, 735, 1012, 1584, 1711, 1885, 2024
BssECI CCNNGG 8 cut(s) 367, 963, 1411, 1429, 1430, 1666, 1748, 1790
BssNI GRCGYC 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 963
Bst2UI CCWGG 8 cut(s) 894, 1337, 1413, 1431, 1668, 1734, 1791, 1989
Bst4CI ACNGT 6 cut(s) 339, 623, 703, 747, 971, 1473
Bst6I CTCTTC 5 cut(s) 243, 907, 1053, 1608, 2008
BstACI GRCGYC 1 cut(s) 264
BstBI TTCGAA 1 cut(s) 1166
BstC8I GCNNGC 3 cut(s) 826, 843, 956
BstDEI CTNAG 7 cut(s) 74, 988, 1312, 1483, 1721, 1836, 2018
BstENI CCTNNNNNAGG 1 cut(s) 1038
BstF5I GGATG 3 cut(s) 760, 1228, 1588
BstFNI CGCG 3 cut(s) 288, 353, 617
BstHHI GCGC 2 cut(s) 429, 1814
BstMAI GTCTC 3 cut(s) 360, 991, 1915
BstMCI CGRYCG 3 cut(s) 276, 421, 444
BstNI CCWGG 8 cut(s) 894, 1337, 1413, 1431, 1668, 1734, 1791, 1989
BstPAI GACNNNNGTC 1 cut(s) 1249
BstSFI CTRYAG 4 cut(s) 165, 1299, 1365, 1686
BstUI CGCG 3 cut(s) 288, 353, 617
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 5 cut(s) 55, 452, 1030, 1043, 1764
BstYI RGATCY 5 cut(s) 55, 452, 1030, 1043, 1764
BstZI CGGCCG 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 797
BtsCI GGATG 3 cut(s) 760, 1228, 1588
BtsIMutI CAGTG 5 cut(s) 645, 1246, 1469, 1577, 2031
Cac8I GCNNGC 3 cut(s) 826, 843, 956
CfoI GCGC 2 cut(s) 429, 1814
Cfr13I GGNCC 7 cut(s) 42, 548, 643, 896, 967, 1427, 1866
CseI GACGC 4 cut(s) 272, 342, 623, 1446
Csp6I GTAC 4 cut(s) 619, 790, 1704, 1992
CviAII CATG 3 cut(s) 668, 836, 1001
CviQI GTAC 4 cut(s) 619, 790, 1704, 1992
DdeI CTNAG 7 cut(s) 74, 988, 1312, 1483, 1721, 1836, 2018
DriI GACNNNNNGTC 1 cut(s) 902
EaeI YGGCCR 2 cut(s) 273, 342
EagI CGGCCG 1 cut(s) 273
Eam1104I CTCTTC 5 cut(s) 243, 907, 1053, 1608, 2008
Eam1105I GACNNNNNGTC 1 cut(s) 902
EarI CTCTTC 5 cut(s) 243, 907, 1053, 1608, 2008
EciI GGCGGA 1 cut(s) 163
EclXI CGGCCG 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 963
Eco147I AGGCCT 3 cut(s) 958, 1402, 1753
Eco31I GGTCTC 2 cut(s) 991, 1915
Eco47I GGWCC 4 cut(s) 548, 643, 896, 967
Eco52I CGGCCG 1 cut(s) 273
Eco57I CTGAAG 2 cut(s) 1218, 1557
EcoNI CCTNNNNNAGG 1 cut(s) 1038
EcoRI GAATTC 1 cut(s) 1774
EcoRII CCWGG 8 cut(s) 892, 1335, 1411, 1429, 1666, 1732, 1789, 1987
EcoT14I CCWWGG 1 cut(s) 963
ErhI CCWWGG 1 cut(s) 963
Esp3I CGTCTC 1 cut(s) 360
FaeI CATG 3 cut(s) 671, 839, 1004
FalI AAGNNNNNCTT 2 cut(s) 1032, 1064
FaqI GGGAC 4 cut(s) 712, 1521, 1548, 2071
FatI CATG 3 cut(s) 667, 835, 1000
FauI CCCGC 3 cut(s) 209, 1066, 2075
FokI GGATG 3 cut(s) 767, 1215, 1595
FspBI CTAG 4 cut(s) 1035, 1493, 1850, 1914
GlaI GCGC 2 cut(s) 428, 1813
GsuI CTGGAG 2 cut(s) 718, 1971
HapII CCGG 6 cut(s) 190, 276, 369, 421, 659, 1869
HgaI GACGC 4 cut(s) 272, 342, 623, 1446
HhaI GCGC 2 cut(s) 429, 1814
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 3 cut(s) 671, 839, 1004
Hin6I GCGC 2 cut(s) 427, 1812
HinP1I GCGC 2 cut(s) 427, 1812
HincII GTYRAC 1 cut(s) 1110
HindII GTYRAC 1 cut(s) 1110
HindIII AAGCTT 1 cut(s) 1169
HinfI GANTC 9 cut(s) 70, 170, 280, 383, 459, 542, 726, 1250, 2059
HpaII CCGG 6 cut(s) 190, 276, 369, 421, 659, 1869
HphI GGTGA 4 cut(s) 458, 491, 715, 1620
Hpy166II GTNNAC 3 cut(s) 643, 1110, 1244
Hpy188III TCNNGA 7 cut(s) 456, 546, 593, 659, 697, 1533, 1655
Hpy8I GTNNAC 3 cut(s) 643, 1110, 1244
Hpy99I CGWCG 5 cut(s) 224, 239, 266, 398, 401
HpyAV CCTTC 7 cut(s) 331, 604, 969, 1242, 1572, 1581, 2019
HpyCH4III ACNGT 6 cut(s) 339, 623, 703, 747, 971, 1473
HpyCH4IV ACGT 1 cut(s) 536
HpyCH4V TGCA 4 cut(s) 787, 1328, 1352, 1367
HpyF3I CTNAG 7 cut(s) 74, 988, 1312, 1483, 1721, 1836, 2018
HpySE526I ACGT 1 cut(s) 536
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 3 cut(s) 671, 839, 1004
HspAI GCGC 2 cut(s) 427, 1812
Kpn2I TCCGGA 1 cut(s) 658
LmnI GCTCC 7 cut(s) 88, 383, 606, 779, 1332, 1361, 1856
LweI GCATC 2 cut(s) 774, 982
MaeI CTAG 4 cut(s) 1035, 1493, 1850, 1914
MaeII ACGT 1 cut(s) 536
MaeIII GTNAC 2 cut(s) 1141, 1458
MbiI CCGCTC 1 cut(s) 1859
MflI RGATCY 5 cut(s) 55, 452, 1030, 1043, 1764
MhlI GDGCHC 1 cut(s) 684
MluI ACGCGT 1 cut(s) 615
MlyI GAGTC 6 cut(s) 64, 392, 453, 536, 1259, 2053
MmeI TCCRAC 7 cut(s) 165, 255, 411, 519, 1420, 1810, 1834
MroI TCCGGA 1 cut(s) 658
MseI TTAA 7 cut(s) 767, 1419, 1713, 1806, 1823, 1878, 1955
MspA1I CMGCKG 1 cut(s) 1291
MspI CCGG 6 cut(s) 190, 276, 369, 421, 659, 1869
MvaI CCWGG 8 cut(s) 894, 1337, 1413, 1431, 1668, 1734, 1791, 1989
MvnI CGCG 3 cut(s) 288, 353, 617
NciI CCSGG 3 cut(s) 277, 369, 1869
NlaIII CATG 3 cut(s) 671, 839, 1004
NlaIV GGNNCC 7 cut(s) 379, 550, 602, 645, 1032, 1150, 1334
NmeAIII GCCGAG 1 cut(s) 1773
NmuCI GTSAC 2 cut(s) 1141, 1458
NspV TTCGAA 1 cut(s) 1166
PasI CCCWGGG 1 cut(s) 1430
PceI AGGCCT 3 cut(s) 958, 1402, 1753
PcsI WCGNNNNNNNCGW 2 cut(s) 240, 396
PfeI GAWTC 3 cut(s) 170, 280, 726
Pfl23II CGTACG 1 cut(s) 618
Ple19I CGATCG 1 cut(s) 444
PleI GAGTC 6 cut(s) 64, 391, 453, 536, 1258, 2053
PpsI GAGTC 6 cut(s) 64, 391, 453, 536, 1258, 2053
PshAI GACNNNNGTC 1 cut(s) 1249
Psp1406I AACGTT 1 cut(s) 536
Psp6I CCWGG 8 cut(s) 892, 1335, 1411, 1429, 1666, 1732, 1789, 1987
PspGI CCWGG 8 cut(s) 892, 1335, 1411, 1429, 1666, 1732, 1789, 1987
PspLI CGTACG 1 cut(s) 618
PspN4I GGNNCC 7 cut(s) 379, 550, 602, 645, 1032, 1150, 1334
PspPI GGNCC 7 cut(s) 42, 548, 643, 896, 967, 1427, 1866
PstI CTGCAG 1 cut(s) 1369
PsuI RGATCY 5 cut(s) 55, 452, 1030, 1043, 1764
PvuI CGATCG 1 cut(s) 444
PvuII CAGCTG 1 cut(s) 1291
RsaI GTAC 4 cut(s) 620, 791, 1705, 1993
RsaNI GTAC 4 cut(s) 619, 790, 1704, 1992
SaqAI TTAA 7 cut(s) 767, 1419, 1713, 1806, 1823, 1878, 1955
Sau96I GGNCC 7 cut(s) 42, 548, 643, 896, 967, 1427, 1866
SchI GAGTC 6 cut(s) 64, 392, 453, 536, 1259, 2053
SduI GDGCHC 1 cut(s) 684
SfaNI GCATC 2 cut(s) 774, 982
SfcI CTRYAG 4 cut(s) 165, 1299, 1365, 1686
SfuI TTCGAA 1 cut(s) 1166
SinI GGWCC 4 cut(s) 548, 643, 896, 967
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SseBI AGGCCT 3 cut(s) 958, 1402, 1753
SspMI CTAG 4 cut(s) 1035, 1493, 1850, 1914
StuI AGGCCT 3 cut(s) 958, 1402, 1753
StyI CCWWGG 1 cut(s) 963
TaaI ACNGT 6 cut(s) 339, 623, 703, 747, 971, 1473
TaiI ACGT 1 cut(s) 539
TaqI TCGA 5 cut(s) 594, 817, 1166, 1342, 1395
TatI WGTACW 1 cut(s) 789
TauI GCSGC 4 cut(s) 207, 288, 1385, 1862
TfiI GAWTC 3 cut(s) 170, 280, 726
Tru1I TTAA 7 cut(s) 767, 1419, 1713, 1806, 1823, 1878, 1955
Tru9I TTAA 7 cut(s) 767, 1419, 1713, 1806, 1823, 1878, 1955
TscAI CASTG 5 cut(s) 645, 1246, 1476, 1584, 2031
TseFI GTSAC 2 cut(s) 1141, 1458
Tsp45I GTSAC 2 cut(s) 1141, 1458
TspDTI ATGAA 3 cut(s) 684, 903, 2001
TspGWI ACGGA 6 cut(s) 82, 1127, 1768, 1815, 1833, 2062
TspRI CASTG 5 cut(s) 645, 1246, 1476, 1584, 2031
VpaK11BI GGWCC 4 cut(s) 548, 643, 896, 967
XagI CCTNNNNNAGG 1 cut(s) 1038
XapI RAATTY 6 cut(s) 574, 853, 862, 934, 1121, 1774
XspI CTAG 4 cut(s) 1035, 1493, 1850, 1914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.