Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0013612

Physical Location & Seq

Genomic Coordinates Forward (+)

25113422 .. 25118630

Gene Structure 5209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013027

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2262 bp

ATGGGTAAGGTAGTGGAGACGAAGAAGAAGAAGAAGAAAGGACGCCCCTCTCTTTTAGATCTCCAAAAACGGAATATCCGAGAGCAACAACACCACCTCCACCGCACCACCAACAATTCCAATTCCACTTCTGCCCCTCGTTCCAACCCTATTTACACCCCTGCCACCACCAACAGCCACCAGCCTCCGCTCCGTCGATCCACCCGCCGCAACCCCAACCCCGACGACGACGACGAGGATGACGACGACTCCGACGGAAACGGCGGCGTTTCGGACGGGAAGCGCCGCGAGAAGAAACTCAAGCTGGTTCTCAAATTGCCGAAATCGTCCGCCAATTCGGCGTCGGTGAATTCCGGCGGGTCTGAGAATGACGACGACGACAACGCCGCGTCGGAAAGCGGCAAAAAGCGTAAGATCAATGCTATAGGGGATGGATCTGGGCTCGCTCACCCTTCCAAGGGCGAGAAGTCGATTCCTGCTACAAATCCCTCCTCAAGCACCCACCAAGGTGGGGCAAAGTTGGATTCTGGACCCTCTACTCCTTTACCCAATACAAAGCTGCTACTTTTCGTTCTTGAGAGGCTTCAAAAGAAGGACACCTATGGGGTGTTTTCTGAACCTGTGGACCCGGAAGAGCTTCCAGACTACCATGAAGTAATAGACAACCCTATGGATTTTGGGACAGTCAAGAAGAAACTTACTAGTGGAGCGTATGCCAGCTTGGAGCAGTTTGAGGATGACATTTTCTTAATTTGCTCGAATGCAATGCAGTACAATGCCCCAGATACTATATATTTTCGACAGGCGCGCTCCATCCATGAGCTTGCGAAAAAGAACTTTGAAAATTTGAGGCAAGATAGTGATGATAATGAACCAGAACCCAAGGTCGTAAGAAGGGGTAGACCACCGACCAAAAATCTGAAGAAACCACTTGGCAGGCCTTCCTTGGAGCGCGCTGGTTCAGAGTTCTCAGATGCCACTCTCGCTACTGGGGCAGAAAATGCCATATTGTCCAATTATGATCGTTCACGAAATAATGATGTGCATACTAGTTGGTTGGCTGATAACAAATTTGAGAGGAATGATGACTTAACAGGTTCCATGTTGAGAGGTAATTCCAAGACTGGGAGAAAGCAGTTTGTATTTGATGAGAACAGGCGTAATACATATCTACACTCTCATCCCTCAGCTAATGGACGAGAGTCAACCGTGTTGACTACATTTGATGGAGAAAGAAAACAGCTAATGCCTGTAGGGCTTCAGTCAGATGGCTATGCAAGGAGCCTGGCTCGATTTGCAGCGAATCTTGGACCTGTTGCTTGGAGAATTGCTGCACTAAGGATCCAAAGGTCTTTGCCTGCTGGTGTTAAGTTCGGCCCTGGGTGGGTTGGTGAAAATGATGTTGCTCCTCATAGGCCACTGGTATTAGCCTCATCCTCAAAAGAGCAGCCATCTTCACCACAGCCCTTACCCATTCGTGCAAACTCGTCTTCTGCTGTGACATCTTGCTCTATTGAATCAAATAAAGATAAATTATCAGACAAACCTTCAGGTCATAACTTGTCAGAGAAACATGCCCCTTCTATTTCTTCAGGGCCGGATGACCATCCAAGCAGTCCTCCCCCACTGTCTGCTGCCACCTCATCAGATCCCTTAGTTGCTAACAGATCTCCTGAATCCCTCACAGGAAAAGGAGAAACTGTTGAAGGATCAAACTCTCGTGGTGGGATTAATATGATGAACAGTAATCTTGGTGGAATCAGGCCAAGGCCTCCTTTTCAGATCCATCGGACTCCTGAAATACAACCTGGGGTGAATGGATTGAATGGGACATATGCATTAAACCGTCCTGCTCAGGTAGGGAAACAAGTTGGCGTGACCAGGCCTGGTGGCTTCAGCTTCCAATCATCTCAAATGCTTGACCAAGTCTCCAGGACTAATACTAACTTGACTTATCCAGTGACTTCAAACAGCTTAAATTCAGAAGAAACCAAGCCCTCTGAAGATCCAGGTACAAAGCAGTCTTCTGGTTCATATTCAAATTCAGTGAAAAAAGAGTCATTGCCAGCCCGAACATCAGGGCTTCATCCCCGGTCATCTTGGCAAGGGTCATCCCAACAGATTAAACCTAATCCAGGATTCTCTCCGCAACAGAAGCCTGACTCAGTTCCACCAGATCTGAACGTCAGATTTCAGTCACCAGGGTCCCCTAGTTCTAGCCGGGCTGATTCAACGCAGCCGGATTTAGCATTGCAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0002576 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032940 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0046903 GO:0051179 GO:0051234 GO:0051276 GO:0070013 GO:0070775 GO:0070776 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

754

Amino Acids

81.71

Weight (kDa)

9.31

Isoelectric Point (pI)

54.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	189 - 270	1.5e-24	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013612)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16690
malus_domestica	MD05G1135100.v1.1 MD10G1140600.v1.1
prunus_persica	Prupe.8G179000_v2.0.a1
pyrus_communis	pycom05g13170 pycom10g11920
rosa_chinensis	RchiOBHm_Chr6g0280831
rosa_laevigata	RLG00000013027
rosa_multiflora	Rmu_co8368811.1_g000001 Rmu_sc0003153.1_g000023 Rmu_sc0038972.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187590
rosa_rugosa	Rorug06G0134800
rosa_samantha	Rh6AG248200 Rh6BG249700 Rh6CG250900 Rh6DG242500
rosa_wichuraiana	Rw6G021450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	901
AccII	CGCG	4 cut(s)	288, 389, 808, 954
AclWI	GGATC	8 cut(s)	192, 442, 1336, 1349, 1643, 1717, 1777, 2000
AcsI	RAATTY	5 cut(s)	349, 844, 1070, 1978, 2041
AcuI	CTGAAG	6 cut(s)	941, 1244, 1533, 1575, 1879, 2022
AcyI	GRCGYC	2 cut(s)	43, 341
AfaI	GTAC	2 cut(s)	773, 2014
AfiI	CCNNNNNNNGG	6 cut(s)	457, 458, 511, 1125, 1384, 2135
AgsI	TTSAA	8 cut(s)	587, 842, 1517, 1706, 1825, 1968, 2040, 2232
AhlI	ACTAGT	2 cut(s)	701, 1049
AjnI	CCWGG	9 cut(s)	1284, 1378, 1807, 1880, 1885, 1931, 2008, 2134, 2200
AleI	CACNNNNGTG	1 cut(s)	507
Alw26I	GTCTC	2 cut(s)	11, 1933
AlwI	GGATC	8 cut(s)	192, 442, 1336, 1349, 1643, 1717, 1777, 2000
AoxI	GGCC	7 cut(s)	938, 1375, 1415, 1595, 1763, 1769, 1883
ApeKI	GCWGC	7 cut(s)	559, 1298, 1331, 1447, 1634, 2236, 2254
ApoI	RAATTY	5 cut(s)	349, 844, 1070, 1978, 2041
AseI	ATTAAT	1 cut(s)	1731
Asp700I	GAANNNNTTC	1 cut(s)	636
AspLEI	GCGC	5 cut(s)	285, 808, 810, 954, 956
AspS9I	GGNCC	6 cut(s)	530, 625, 1310, 1376, 1595, 2205
AsuC2I	CCSGG	3 cut(s)	629, 2092, 2222
AsuHPI	GGTGA	6 cut(s)	358, 440, 1403, 1449, 1825, 2190
AvaII	GGWCC	4 cut(s)	530, 625, 1310, 2205
BamHI	GGATCC	1 cut(s)	1341
BanII	GRGCYC	1 cut(s)	444
BauI	CACGAG	1 cut(s)	1719
BbsI	GAAGAC	2 cut(s)	1482, 2016
BbvCI	CCTCAGC	1 cut(s)	1186
BbvI	GCAGC	6 cut(s)	546, 1310, 1318, 1459, 1621, 2248
BccI	CCATC	7 cut(s)	425, 821, 1220, 1262, 1459, 1614, 1794
BceAI	ACGGC	1 cut(s)	277
BcgI	CGANNNNNNTGC	2 cut(s)	748, 782
BciT130I	CCWGG	9 cut(s)	1286, 1380, 1809, 1882, 1887, 1933, 2010, 2136, 2202
BcnI	CCSGG	3 cut(s)	629, 2092, 2222
BcoDI	GTCTC	2 cut(s)	11, 1933
BcuI	ACTAGT	2 cut(s)	701, 1049
BfaI	CTAG	4 cut(s)	702, 1050, 2211, 2217
BfmI	CTRYAG	2 cut(s)	423, 1251
BfoI	RGCGCY	1 cut(s)	286
BglI	GCCNNNNNGGC	2 cut(s)	338, 1255
BglII	AGATCT	3 cut(s)	58, 1667, 2176
Bme18I	GGWCC	4 cut(s)	530, 625, 1310, 2205
BmgT120I	GGNCC	6 cut(s)	530, 625, 1310, 1376, 1595, 2205
BmiI	GGNNCC	7 cut(s)	532, 627, 1099, 1283, 1343, 2206, 2207
BmrI	ACTGGG	2 cut(s)	999, 1134
BmsI	GCATC	1 cut(s)	964
BmuI	ACTGGG	2 cut(s)	999, 1134
BoxI	GACNNNNGTC	1 cut(s)	1201
BpiI	GAAGAC	2 cut(s)	1482, 2016
BplI	GAGNNNNNCTC	2 cut(s)	1273, 1305
BpmI	CTGGAG	1 cut(s)	1915
Bpu10I	CCTNAGC	2 cut(s)	1186, 1854
BpuEI	CTTGAG	3 cut(s)	284, 478, 596
BpuMI	CCSGG	3 cut(s)	629, 2092, 2222
BsaBI	GATNNNNATC	1 cut(s)	1605
BsaHI	GRCGYC	2 cut(s)	43, 341
BsaXI	ACNNNNNCTCC	8 cut(s)	81, 111, 233, 263, 1686, 1716, 1913, 1943
Bsc4I	CCNNNNNNNGG	6 cut(s)	457, 458, 511, 1125, 1384, 2135
Bse1I	ACTGG	4 cut(s)	994, 1129, 1425, 1958
Bse3DI	GCAATG	3 cut(s)	771, 2060, 2249
Bse8I	GATNNNNATC	1 cut(s)	1605
BseBI	CCWGG	9 cut(s)	1286, 1380, 1809, 1882, 1887, 1933, 2010, 2136, 2202
BseJI	GATNNNNATC	1 cut(s)	1605
BseLI	CCNNNNNNNGG	6 cut(s)	457, 458, 511, 1125, 1384, 2135
BseMI	GCAATG	3 cut(s)	771, 2060, 2249
BseMII	CTCAG	5 cut(s)	354, 984, 1200, 1868, 2178
BseNI	ACTGG	4 cut(s)	994, 1129, 1425, 1958
BsePI	GCGCGC	2 cut(s)	806, 952
BseRI	GAGGAG	2 cut(s)	481, 1398
BseXI	GCAGC	6 cut(s)	546, 1310, 1318, 1459, 1621, 2248
BsgI	GTGCAG	1 cut(s)	1317
Bsh1236I	CGCG	4 cut(s)	288, 389, 808, 954
BshFI	GGCC	7 cut(s)	940, 1377, 1417, 1597, 1765, 1771, 1885
BsiSI	CCGG	6 cut(s)	354, 629, 1598, 2092, 2221, 2240
BslFI	GGGAC	3 cut(s)	694, 1843, 2191
BslI	CCNNNNNNNGG	6 cut(s)	457, 458, 511, 1125, 1384, 2135
BsmAI	GTCTC	2 cut(s)	11, 1933
BsmBI	CGTCTC	1 cut(s)	11
BsmFI	GGGAC	3 cut(s)	694, 1843, 2191
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	7 cut(s)	940, 1377, 1417, 1597, 1765, 1771, 1885
Bsp1286I	GDGCHC	1 cut(s)	444
BspANI	GGCC	7 cut(s)	940, 1377, 1417, 1597, 1765, 1771, 1885
BspCNI	CTCAG	5 cut(s)	355, 983, 1199, 1867, 2177
BspFNI	CGCG	4 cut(s)	288, 389, 808, 954
BspLI	GGNNCC	7 cut(s)	532, 627, 1099, 1283, 1343, 2206, 2207
BspPI	GGATC	8 cut(s)	192, 442, 1336, 1349, 1643, 1717, 1777, 2000
BspQI	GCTCTTC	1 cut(s)	627
BsrBI	CCGCTC	1 cut(s)	190
BsrDI	GCAATG	3 cut(s)	771, 2060, 2249
BsrI	ACTGG	4 cut(s)	994, 1129, 1425, 1958
BssHII	GCGCGC	2 cut(s)	806, 952
BssNI	GRCGYC	2 cut(s)	43, 341
BssSI	CACGAG	1 cut(s)	1719
BssT1I	CCWWGG	5 cut(s)	456, 505, 882, 945, 1766
Bst2BI	CACGAG	1 cut(s)	1719
Bst2UI	CCWGG	9 cut(s)	1286, 1380, 1809, 1882, 1887, 1933, 2010, 2136, 2202
Bst4CI	ACNGT	6 cut(s)	685, 1210, 1629, 1702, 1745, 1847
Bst6I	CTCTTC	1 cut(s)	627
BstACI	GRCGYC	2 cut(s)	43, 341
BstAPI	GCANNNNNTGC	1 cut(s)	1001
BstC8I	GCNNGC	8 cut(s)	444, 718, 808, 825, 938, 954, 1359, 2067
BstDEI	CTNAG	7 cut(s)	363, 970, 1186, 1337, 1654, 1854, 2164
BstENI	CCTNNNNNAGG	1 cut(s)	2133
BstFNI	CGCG	4 cut(s)	288, 389, 808, 954
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	5 cut(s)	285, 808, 810, 954, 956
BstMAI	GTCTC	2 cut(s)	11, 1933
BstMWI	GCNNNNNNNGC	7 cut(s)	338, 983, 992, 1001, 1255, 1295, 2155
BstNI	CCWGG	9 cut(s)	1286, 1380, 1809, 1882, 1887, 1933, 2010, 2136, 2202
BstNSI	RCATGY	1 cut(s)	1577
BstPAI	GACNNNNGTC	1 cut(s)	1201
BstSFI	CTRYAG	2 cut(s)	423, 1251
BstUI	CGCG	4 cut(s)	288, 389, 808, 954
BstV1I	GCAGC	6 cut(s)	546, 1310, 1318, 1459, 1621, 2248
BstV2I	GAAGAC	2 cut(s)	1482, 2016
BstX2I	RGATCY	8 cut(s)	58, 434, 1341, 1648, 1667, 1782, 2005, 2176
BstXI	CCANNNNNNTGG	1 cut(s)	509
BstYI	RGATCY	8 cut(s)	58, 434, 1341, 1648, 1667, 1782, 2005, 2176
BsuRI	GGCC	7 cut(s)	940, 1377, 1417, 1597, 1765, 1771, 1885
BtsIMutI	CAGTG	4 cut(s)	1418, 1625, 1965, 2052
Cac8I	GCNNGC	8 cut(s)	444, 718, 808, 825, 938, 954, 1359, 2067
CfoI	GCGC	5 cut(s)	285, 808, 810, 954, 956
Cfr13I	GGNCC	6 cut(s)	530, 625, 1310, 1376, 1595, 2205
CseI	GACGC	3 cut(s)	51, 330, 378
Csp6I	GTAC	2 cut(s)	772, 2013
CviAII	CATG	4 cut(s)	650, 818, 1102, 1574
CviQI	GTAC	2 cut(s)	772, 2013
DdeI	CTNAG	7 cut(s)	363, 970, 1186, 1337, 1654, 1854, 2164
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
EciI	GGCGGA	1 cut(s)	319
Eco130I	CCWWGG	5 cut(s)	456, 505, 882, 945, 1766
Eco147I	AGGCCT	3 cut(s)	940, 1771, 1885
Eco24I	GRGCYC	1 cut(s)	444
Eco47I	GGWCC	4 cut(s)	530, 625, 1310, 2205
Eco57I	CTGAAG	6 cut(s)	941, 1244, 1533, 1575, 1879, 2022
EcoNI	CCTNNNNNAGG	1 cut(s)	2133
EcoO109I	RGGNCCY	1 cut(s)	2205
EcoRI	GAATTC	1 cut(s)	349
EcoRII	CCWGG	9 cut(s)	1284, 1378, 1807, 1880, 1885, 1931, 2008, 2134, 2200
EcoT14I	CCWWGG	5 cut(s)	456, 505, 882, 945, 1766
EcoT22I	ATGCAT	1 cut(s)	1840
EcoT38I	GRGCYC	1 cut(s)	444
ErhI	CCWWGG	5 cut(s)	456, 505, 882, 945, 1766
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	4 cut(s)	653, 821, 1105, 1577
FalI	AAGNNNNNCTT	2 cut(s)	1759, 1791
FaqI	GGGAC	3 cut(s)	694, 1843, 2191
FatI	CATG	4 cut(s)	649, 817, 1101, 1573
FauI	CCCGC	2 cut(s)	212, 350
FauNDI	CATATG	1 cut(s)	1834
FblI	GTMKAC	1 cut(s)	901
FriOI	GRGCYC	1 cut(s)	444
FspBI	CTAG	4 cut(s)	702, 1050, 2211, 2217
GlaI	GCGC	5 cut(s)	284, 807, 809, 953, 955
GsuI	CTGGAG	1 cut(s)	1915
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	7 cut(s)	940, 1377, 1417, 1597, 1765, 1771, 1885
HapII	CCGG	6 cut(s)	354, 629, 1598, 2092, 2221, 2240
HgaI	GACGC	3 cut(s)	51, 330, 378
HhaI	GCGC	5 cut(s)	285, 808, 810, 954, 956
Hin1I	GRCGYC	2 cut(s)	43, 341
Hin1II	CATG	4 cut(s)	653, 821, 1105, 1577
Hin6I	GCGC	5 cut(s)	283, 806, 808, 952, 954
HinP1I	GCGC	5 cut(s)	283, 806, 808, 952, 954
HincII	GTYRAC	2 cut(s)	1206, 1215
HindII	GTYRAC	2 cut(s)	1206, 1215
HpaII	CCGG	6 cut(s)	354, 629, 1598, 2092, 2221, 2240
HphI	GGTGA	6 cut(s)	358, 440, 1403, 1449, 1825, 2190
Hpy166II	GTNNAC	5 cut(s)	625, 902, 1028, 1206, 1215
Hpy188III	TCNNGA	7 cut(s)	528, 575, 641, 688, 1029, 1673, 1796
Hpy8I	GTNNAC	5 cut(s)	625, 902, 1028, 1206, 1215
HpyAV	CCTTC	7 cut(s)	462, 586, 888, 951, 1557, 1590, 1700
HpyCH4III	ACNGT	6 cut(s)	685, 1210, 1629, 1702, 1745, 1847
HpyCH4IV	ACGT	1 cut(s)	2184
HpyCH4V	TGCA	9 cut(s)	764, 769, 1045, 1277, 1298, 1334, 1481, 1838, 2254
HpyF10VI	GCNNNNNNNGC	7 cut(s)	338, 983, 992, 1001, 1255, 1295, 2155
HpyF3I	CTNAG	7 cut(s)	363, 970, 1186, 1337, 1654, 1854, 2164
HpySE526I	ACGT	1 cut(s)	2184
Hsp92I	GRCGYC	2 cut(s)	43, 341
Hsp92II	CATG	4 cut(s)	653, 821, 1105, 1577
HspAI	GCGC	5 cut(s)	283, 806, 808, 952, 954
KflI	GGGWCCC	1 cut(s)	2205
LguI	GCTCTTC	1 cut(s)	627
LmnI	GCTCC	7 cut(s)	195, 707, 724, 815, 949, 1281, 1411
Lsp1109I	GCAGC	6 cut(s)	546, 1310, 1318, 1459, 1621, 2248
LweI	GCATC	1 cut(s)	964
MaeI	CTAG	4 cut(s)	702, 1050, 2211, 2217
MaeII	ACGT	1 cut(s)	2184
MaeIII	GTNAC	4 cut(s)	1498, 1876, 1960, 2196
MbiI	CCGCTC	1 cut(s)	190
MflI	RGATCY	8 cut(s)	58, 434, 1341, 1648, 1667, 1782, 2005, 2176
MhlI	GDGCHC	1 cut(s)	444
MlyI	GAGTC	5 cut(s)	242, 1211, 1786, 2066, 2156
MmeI	TCCRAC	4 cut(s)	168, 276, 372, 501
Mph1103I	ATGCAT	1 cut(s)	1840
MroXI	GAANNNNTTC	1 cut(s)	636
MseI	TTAA	7 cut(s)	749, 1091, 1368, 1731, 1841, 1976, 2124
MslI	CAYNNNNRTG	1 cut(s)	507
MspI	CCGG	6 cut(s)	354, 629, 1598, 2092, 2221, 2240
Mva1269I	GAATGC	1 cut(s)	766
MvaI	CCWGG	9 cut(s)	1286, 1380, 1809, 1882, 1887, 1933, 2010, 2136, 2202
MvnI	CGCG	4 cut(s)	288, 389, 808, 954
MwoI	GCNNNNNNNGC	7 cut(s)	338, 983, 992, 1001, 1255, 1295, 2155
NciI	CCSGG	3 cut(s)	629, 2092, 2222
NdeI	CATATG	1 cut(s)	1834
NlaIII	CATG	4 cut(s)	653, 821, 1105, 1577
NlaIV	GGNNCC	7 cut(s)	532, 627, 1099, 1283, 1343, 2206, 2207
NmuCI	GTSAC	4 cut(s)	1498, 1876, 1960, 2196
NsiI	ATGCAT	1 cut(s)	1840
NspI	RCATGY	1 cut(s)	1577
OliI	CACNNNNGTG	1 cut(s)	507
PasI	CCCWGGG	1 cut(s)	1379
PauI	GCGCGC	2 cut(s)	806, 952
PceI	AGGCCT	3 cut(s)	940, 1771, 1885
PciSI	GCTCTTC	1 cut(s)	627
PcsI	WCGNNNNNNNCGW	4 cut(s)	76, 231, 240, 249
PctI	GAATGC	1 cut(s)	766
PdmI	GAANNNNTTC	1 cut(s)	636
PfeI	GAWTC	8 cut(s)	472, 524, 1303, 1517, 1676, 1758, 2139, 2228
PflFI	GACNNNGTC	1 cut(s)	1925
PfoI	TCCNGGA	2 cut(s)	1931, 2134
PleI	GAGTC	5 cut(s)	242, 1210, 1786, 2065, 2156
PpsI	GAGTC	5 cut(s)	242, 1210, 1786, 2065, 2156
PpuMI	RGGWCCY	1 cut(s)	2205
PshAI	GACNNNNGTC	1 cut(s)	1201
PshBI	ATTAAT	1 cut(s)	1731
Psp5II	RGGWCCY	1 cut(s)	2205
Psp6I	CCWGG	9 cut(s)	1284, 1378, 1807, 1880, 1885, 1931, 2008, 2134, 2200
PspGI	CCWGG	9 cut(s)	1284, 1378, 1807, 1880, 1885, 1931, 2008, 2134, 2200
PspN4I	GGNNCC	7 cut(s)	532, 627, 1099, 1283, 1343, 2206, 2207
PspPI	GGNCC	6 cut(s)	530, 625, 1310, 1376, 1595, 2205
PspPPI	RGGWCCY	1 cut(s)	2205
PsuI	RGATCY	8 cut(s)	58, 434, 1341, 1648, 1667, 1782, 2005, 2176
PsyI	GACNNNGTC	1 cut(s)	1925
PteI	GCGCGC	2 cut(s)	806, 952
RsaI	GTAC	2 cut(s)	773, 2014
RsaNI	GTAC	2 cut(s)	772, 2013
RseI	CAYNNNNRTG	1 cut(s)	507
SapI	GCTCTTC	1 cut(s)	627
SaqAI	TTAA	7 cut(s)	749, 1091, 1368, 1731, 1841, 1976, 2124
Sau96I	GGNCC	6 cut(s)	530, 625, 1310, 1376, 1595, 2205
SchI	GAGTC	5 cut(s)	242, 1211, 1786, 2066, 2156
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	1 cut(s)	964
SfcI	CTRYAG	2 cut(s)	423, 1251
SinI	GGWCC	4 cut(s)	530, 625, 1310, 2205
SmiMI	CAYNNNNRTG	1 cut(s)	507
SmlI	CTYRAG	3 cut(s)	299, 493, 575
SmoI	CTYRAG	3 cut(s)	299, 493, 575
SpeI	ACTAGT	2 cut(s)	701, 1049
SseBI	AGGCCT	3 cut(s)	940, 1771, 1885
SspMI	CTAG	4 cut(s)	702, 1050, 2211, 2217
StuI	AGGCCT	3 cut(s)	940, 1771, 1885
StyI	CCWWGG	5 cut(s)	456, 505, 882, 945, 1766
TaaI	ACNGT	6 cut(s)	685, 1210, 1629, 1702, 1745, 1847
TaiI	ACGT	1 cut(s)	2187
TaqI	TCGA	5 cut(s)	196, 470, 758, 799, 1291
TatI	WGTACW	1 cut(s)	771
TauI	GCSGC	5 cut(s)	210, 267, 288, 389, 402
TfiI	GAWTC	8 cut(s)	472, 524, 1303, 1517, 1676, 1758, 2139, 2228
Tru1I	TTAA	7 cut(s)	749, 1091, 1368, 1731, 1841, 1976, 2124
Tru9I	TTAA	7 cut(s)	749, 1091, 1368, 1731, 1841, 1976, 2124
TscAI	CASTG	4 cut(s)	1425, 1632, 1965, 2052
TseFI	GTSAC	4 cut(s)	1498, 1876, 1960, 2196
TseI	GCWGC	7 cut(s)	559, 1298, 1331, 1447, 1634, 2236, 2254
Tsp45I	GTSAC	4 cut(s)	1498, 1876, 1960, 2196
TspDTI	ATGAA	5 cut(s)	666, 885, 1754, 2022, 2075
TspGWI	ACGGA	3 cut(s)	85, 182, 270
TspRI	CASTG	4 cut(s)	1425, 1632, 1965, 2052
Tth111I	GACNNNGTC	1 cut(s)	1925
VpaK11BI	GGWCC	4 cut(s)	530, 625, 1310, 2205
VspI	ATTAAT	1 cut(s)	1731
XagI	CCTNNNNNAGG	1 cut(s)	2133
XapI	RAATTY	5 cut(s)	349, 844, 1070, 1978, 2041
XceI	RCATGY	1 cut(s)	1577
XmiI	GTMKAC	1 cut(s)	901
XmnI	GAANNNNTTC	1 cut(s)	636
XspI	CTAG	4 cut(s)	702, 1050, 2211, 2217
Zsp2I	ATGCAT	1 cut(s)	1840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.