Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0013612

Physical Location & Seq

Genomic Coordinates Reverse (-)

46152803 .. 46158024

Gene Structure 5222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG249700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2295 bp

ATGGGTAAGGTAGTGGAGACGAAGAAGAAGAAGAAGAAAGGACGCCCCTCTCTTTTAGATCTCCAAAAACGGAATATCAGAGAGCAACAACACCACCTCCACCGCACCTCCAACAATTCCAATTCCACTTCTGCCCCTCGTTCCAACCCTATTTACACCCCTACTGCCCCTCCCACCACCGCCGCCGCCGCCAGCCACAACCAGCCTCCGCTCCGTCGATCCACCCGCCGCAACCCCAACCCCGACGACGACGACGACGAGGATGACGACGACGACGACTCCGACGGAAACGGCGGCGCTTCGGACGGGAAGCGCCGCGAGAAGAAACTCAAGCTGGTTCTCAAATTGCCGAAATCGTCCGCGAATTCGGCGTCGGTGAATTCCGGCGGGTCGGAGAATGACGACGACGACGACAACGCCGCGTCGGAGAGCGGCAAAAAGCGTAAGATCAATGCTATAGGGGATGGATCTGGGCTCGCTCACCCGCCAAAGGGCGACAAGTCGATTCCTGCTACAAACCCCTCCTCAAGCACCCACCAAGGTGGGGTGAAGTTGGATTCTGGACCCTCTACTCCTTTACCCAATACAAAGCTGCTACTTTTCGTTCTTGAGAGGCTTCAAAAGAAGGACACCTATGGGGTGTTTTCTGAACCTGTGGACCCGGAAGAGCTTCCAGACTACCATGAAGTAATAGACAACCCTATGGATTTTGGGACAGTGAAGAAGAAACTTACTAGTGGAGCGTATGCCAGCTTGGAGCAGTTTGAGGATGACATTTTCTTAATTTGCTCGAATGCAATGCAGTACAATGCCCCAGATACTATATATTTTCGACAGGCGCGCTCCATCCATGAGCTTGCAAAAAAGAACTTTGAAAATTTGAGGCAAGATAGTGATGATAATGAACCAGAACCCAAGGTCGTAAGAAGGGGTAGACCACCAACCAAAAATCTGAAGAAACCACTTGGCAGGCCTTCCTTGGAGCGCGCTGGTTCAGAGTTCTCAGATGCCACTCTCGCTACTGGGGCAGAAAATGCCATATTGTCCAATTATGATCGTTCACGAAGTAATGATGTGTATACTAGTTGGTTGGCTGATAACAAATTTGAGAGGAATGATGACTTAACAGGTTCCATGTTGAGAGGTAATTCCAAGACTGGGAGAAAGCAGTTTGTATTTGATGAGAACAGGCGTAATACATATCTACATTCTCATCCCTCAGCTAATGGACGAGAGTCAACCGTGTTGACTACATTTGATGGAGAAAGAAAACAGCTAATGCCTGTAGGGCTTCAGTCAGATGGTTATGCAAGGAGCCTGGCTCGATTTGCAGCGAATCTTGGACCTGTTACTTGGAGAATTGCTGCACAAAGGATCCAAAGGTCTTTGCCTGCTGGTGTTAAGTTCGGCCCTGGGTGGGTTGGTGAAAATGATGTTGCTCCTCATAGGCCACTGGTATTAGCCTCATCCTCAAAAGAGCAGCCATCTTCACCACAGCCCTTGCCCATTCGTGCAAACTCGTCTTCTGCTGCAATATCTTGCTCTATTGAACCAAATAAAGATAAATTATCAGACAAACCTTCAGGTCATAACTTGTCAGAGAAACATGCCCCTTCTATTTCTTCAGGGCCGGATGTCCATCCAAGCAGTCCTCCCCCGCTGTCTGCTGCCACCTCATCAGATCCCTTTGTTGCTAACAGATCCCCTGAATCCCTCACAGGAAAAGGAGAAACTGTTGAAGGATCAAACTCTCGTGGTGGGATTAATATGATGAACAGTAATCTTGGTGGAATCAGGCCAAGGCCTCCTTTTCAGATCCATCGGACTCCTGAAATACAACCTGGGGTGAATGGATTGAATGGGACATATGGATTAAACCGTCCTGCTCAGGTAGGGAAACAAGTTGGCGTGACCAGGCCTGGTGGCTTCAGCTTCCAATCATCTCAAATGCTTGACCAAGTCTCCAGGACTAATACTAACCTGACTCATCCAGCGACTTCAAACAGCTTAAATTCAGAAGAAACCAAGCCCTCTGAAGATCCAGGTACAAAGCAGTCTTCTGGTTCATATTCAAATTCAGTGAAAAATGAGTCATTGCCAGCCCGAACATCGGGGCTTCATCCCCGGTCATCTTGGCGAGGGTCATCCCAACAGATTAAACCTAATCCAGGATTCTCTCCGCAACAGAAGCCTGACTCAGTTCCACCAGATCTGAACGTCAGATTTCAGTCACCAGGGTCCCCTAGTTCTAGCCGAGCTGATTCAACGCAGCCGGATTTAGCATTGCAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0002576 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032940 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0046903 GO:0051179 GO:0051234 GO:0051276 GO:0070013 GO:0070775 GO:0070776 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

764

Amino Acids

82.73

Weight (kDa)

9.16

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	200 - 281	1.5e-24	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013612)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16690
malus_domestica	MD05G1135100.v1.1 MD10G1140600.v1.1
prunus_persica	Prupe.8G179000_v2.0.a1
pyrus_communis	pycom05g13170 pycom10g11920
rosa_chinensis	RchiOBHm_Chr6g0280831
rosa_laevigata	RLG00000013027
rosa_multiflora	Rmu_co8368811.1_g000001 Rmu_sc0003153.1_g000023 Rmu_sc0038972.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187590
rosa_rugosa	Rorug06G0134800
rosa_samantha	Rh6AG248200 Rh6BG249700 Rh6CG250900 Rh6DG242500
rosa_wichuraiana	Rw6G021450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	211, 432
AccI	GTMKAC	2 cut(s)	934, 1079
AccII	CGCG	5 cut(s)	318, 362, 422, 841, 987
AclWI	GGATC	9 cut(s)	213, 475, 1369, 1382, 1676, 1695, 1750, 1810, 2033
AcsI	RAATTY	6 cut(s)	364, 379, 877, 1103, 2011, 2074
AcuI	CTGAAG	6 cut(s)	974, 1277, 1566, 1608, 1912, 2055
AcyI	GRCGYC	2 cut(s)	43, 371
AfaI	GTAC	2 cut(s)	806, 2047
AfiI	CCNNNNNNNGG	7 cut(s)	490, 491, 544, 1158, 1417, 2110, 2168
AgsI	TTSAA	8 cut(s)	620, 875, 1550, 1739, 1858, 2001, 2073, 2265
AhlI	ACTAGT	2 cut(s)	734, 1082
AjnI	CCWGG	9 cut(s)	1317, 1411, 1840, 1913, 1918, 1964, 2041, 2167, 2233
AleI	CACNNNNGTG	1 cut(s)	540
Alw26I	GTCTC	2 cut(s)	11, 1966
AlwI	GGATC	9 cut(s)	213, 475, 1369, 1382, 1676, 1695, 1750, 1810, 2033
AoxI	GGCC	7 cut(s)	971, 1408, 1448, 1628, 1796, 1802, 1916
ApeKI	GCWGC	8 cut(s)	592, 1331, 1364, 1480, 1529, 1667, 2269, 2287
ApoI	RAATTY	6 cut(s)	364, 379, 877, 1103, 2011, 2074
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
AseI	ATTAAT	1 cut(s)	1764
Asp700I	GAANNNNTTC	1 cut(s)	669
AspLEI	GCGC	6 cut(s)	299, 315, 841, 843, 987, 989
AspS9I	GGNCC	6 cut(s)	563, 658, 1343, 1409, 1628, 2238
AsuC2I	CCSGG	2 cut(s)	662, 2125
AsuHPI	GGTGA	7 cut(s)	388, 473, 559, 1436, 1482, 1858, 2223
AvaII	GGWCC	4 cut(s)	563, 658, 1343, 2238
BamHI	GGATCC	1 cut(s)	1374
BanII	GRGCYC	1 cut(s)	477
BauI	CACGAG	1 cut(s)	1752
BbsI	GAAGAC	2 cut(s)	1515, 2049
BbvCI	CCTCAGC	1 cut(s)	1219
BbvI	GCAGC	7 cut(s)	579, 1343, 1351, 1492, 1516, 1654, 2281
BccI	CCATC	7 cut(s)	458, 854, 1253, 1295, 1492, 1647, 1827
BceAI	ACGGC	1 cut(s)	307
BcgI	CGANNNNNNTGC	2 cut(s)	781, 815
BciT130I	CCWGG	9 cut(s)	1319, 1413, 1842, 1915, 1920, 1966, 2043, 2169, 2235
BcnI	CCSGG	2 cut(s)	662, 2125
BcoDI	GTCTC	2 cut(s)	11, 1966
BcuI	ACTAGT	2 cut(s)	734, 1082
BfaI	CTAG	4 cut(s)	735, 1083, 2244, 2250
BfmI	CTRYAG	2 cut(s)	456, 1284
BfoI	RGCGCY	2 cut(s)	300, 316
BglI	GCCNNNNNGGC	1 cut(s)	1288
BglII	AGATCT	2 cut(s)	58, 2209
Bme18I	GGWCC	4 cut(s)	563, 658, 1343, 2238
BmgT120I	GGNCC	6 cut(s)	563, 658, 1343, 1409, 1628, 2238
BmiI	GGNNCC	7 cut(s)	565, 660, 1132, 1316, 1376, 2239, 2240
BmrI	ACTGGG	2 cut(s)	1032, 1167
BmsI	GCATC	1 cut(s)	997
BmuI	ACTGGG	2 cut(s)	1032, 1167
BoxI	GACNNNNGTC	1 cut(s)	1234
BpiI	GAAGAC	2 cut(s)	1515, 2049
BplI	GAGNNNNNCTC	2 cut(s)	1306, 1338
BpmI	CTGGAG	1 cut(s)	1948
Bpu10I	CCTNAGC	2 cut(s)	1219, 1887
BpuEI	CTTGAG	3 cut(s)	314, 511, 629
BpuMI	CCSGG	2 cut(s)	662, 2125
BsaBI	GATNNNNATC	1 cut(s)	1638
BsaHI	GRCGYC	2 cut(s)	43, 371
BsaJI	CCNNGG	9 cut(s)	538, 915, 978, 1411, 1412, 1799, 1841, 2123, 2234
Bsc4I	CCNNNNNNNGG	7 cut(s)	490, 491, 544, 1158, 1417, 2110, 2168
Bse1I	ACTGG	3 cut(s)	1027, 1162, 1458
Bse3DI	GCAATG	3 cut(s)	804, 2093, 2282
Bse8I	GATNNNNATC	1 cut(s)	1638
BseBI	CCWGG	9 cut(s)	1319, 1413, 1842, 1915, 1920, 1966, 2043, 2169, 2235
BseDI	CCNNGG	9 cut(s)	538, 915, 978, 1411, 1412, 1799, 1841, 2123, 2234
BseJI	GATNNNNATC	1 cut(s)	1638
BseLI	CCNNNNNNNGG	7 cut(s)	490, 491, 544, 1158, 1417, 2110, 2168
BseMI	GCAATG	3 cut(s)	804, 2093, 2282
BseMII	CTCAG	4 cut(s)	1017, 1233, 1901, 2211
BseNI	ACTGG	3 cut(s)	1027, 1162, 1458
BsePI	GCGCGC	2 cut(s)	839, 985
BseRI	GAGGAG	2 cut(s)	514, 1431
BseXI	GCAGC	7 cut(s)	579, 1343, 1351, 1492, 1516, 1654, 2281
BsgI	GTGCAG	1 cut(s)	1350
Bsh1236I	CGCG	5 cut(s)	318, 362, 422, 841, 987
BshFI	GGCC	7 cut(s)	973, 1410, 1450, 1630, 1798, 1804, 1918
BsiSI	CCGG	5 cut(s)	384, 662, 1631, 2125, 2273
BslFI	GGGAC	3 cut(s)	727, 1876, 2224
BslI	CCNNNNNNNGG	7 cut(s)	490, 491, 544, 1158, 1417, 2110, 2168
BsmAI	GTCTC	2 cut(s)	11, 1966
BsmBI	CGTCTC	1 cut(s)	11
BsmFI	GGGAC	3 cut(s)	727, 1876, 2224
BsmI	GAATGC	1 cut(s)	799
BsnI	GGCC	7 cut(s)	973, 1410, 1450, 1630, 1798, 1804, 1918
Bsp1286I	GDGCHC	1 cut(s)	477
BspANI	GGCC	7 cut(s)	973, 1410, 1450, 1630, 1798, 1804, 1918
BspCNI	CTCAG	4 cut(s)	1016, 1232, 1900, 2210
BspFNI	CGCG	5 cut(s)	318, 362, 422, 841, 987
BspLI	GGNNCC	7 cut(s)	565, 660, 1132, 1316, 1376, 2239, 2240
BspPI	GGATC	9 cut(s)	213, 475, 1369, 1382, 1676, 1695, 1750, 1810, 2033
BspQI	GCTCTTC	1 cut(s)	660
BsrBI	CCGCTC	2 cut(s)	211, 432
BsrDI	GCAATG	3 cut(s)	804, 2093, 2282
BsrI	ACTGG	3 cut(s)	1027, 1162, 1458
BssECI	CCNNGG	9 cut(s)	538, 915, 978, 1411, 1412, 1799, 1841, 2123, 2234
BssHII	GCGCGC	2 cut(s)	839, 985
BssNAI	GTATAC	1 cut(s)	1080
BssNI	GRCGYC	2 cut(s)	43, 371
BssSI	CACGAG	1 cut(s)	1752
BssT1I	CCWWGG	4 cut(s)	538, 915, 978, 1799
Bst1107I	GTATAC	1 cut(s)	1080
Bst2BI	CACGAG	1 cut(s)	1752
Bst2UI	CCWGG	9 cut(s)	1319, 1413, 1842, 1915, 1920, 1966, 2043, 2169, 2235
Bst4CI	ACNGT	5 cut(s)	718, 1243, 1735, 1778, 1880
Bst6I	CTCTTC	1 cut(s)	660
BstACI	GRCGYC	2 cut(s)	43, 371
BstAPI	GCANNNNNTGC	1 cut(s)	1034
BstC8I	GCNNGC	9 cut(s)	193, 477, 751, 841, 858, 971, 987, 1392, 2100
BstDEI	CTNAG	4 cut(s)	1003, 1219, 1887, 2197
BstENI	CCTNNNNNAGG	1 cut(s)	2166
BstFNI	CGCG	5 cut(s)	318, 362, 422, 841, 987
BstH2I	RGCGCY	2 cut(s)	300, 316
BstHHI	GCGC	6 cut(s)	299, 315, 841, 843, 987, 989
BstMAI	GTCTC	2 cut(s)	11, 1966
BstMWI	GCNNNNNNNGC	8 cut(s)	188, 368, 1016, 1025, 1034, 1288, 1328, 2188
BstNI	CCWGG	9 cut(s)	1319, 1413, 1842, 1915, 1920, 1966, 2043, 2169, 2235
BstNSI	RCATGY	1 cut(s)	1610
BstPAI	GACNNNNGTC	1 cut(s)	1234
BstSFI	CTRYAG	2 cut(s)	456, 1284
BstUI	CGCG	5 cut(s)	318, 362, 422, 841, 987
BstV1I	GCAGC	7 cut(s)	579, 1343, 1351, 1492, 1516, 1654, 2281
BstV2I	GAAGAC	2 cut(s)	1515, 2049
BstX2I	RGATCY	8 cut(s)	58, 467, 1374, 1681, 1700, 1815, 2038, 2209
BstXI	CCANNNNNNTGG	1 cut(s)	542
BstYI	RGATCY	8 cut(s)	58, 467, 1374, 1681, 1700, 1815, 2038, 2209
BstZ17I	GTATAC	1 cut(s)	1080
BsuRI	GGCC	7 cut(s)	973, 1410, 1450, 1630, 1798, 1804, 1918
BtsIMutI	CAGTG	3 cut(s)	723, 1451, 2085
Cac8I	GCNNGC	9 cut(s)	193, 477, 751, 841, 858, 971, 987, 1392, 2100
CfoI	GCGC	6 cut(s)	299, 315, 841, 843, 987, 989
Cfr13I	GGNCC	6 cut(s)	563, 658, 1343, 1409, 1628, 2238
CseI	GACGC	3 cut(s)	51, 360, 411
Csp6I	GTAC	2 cut(s)	805, 2046
CspCI	CAANNNNNGTGG	2 cut(s)	1482, 1517
CviAII	CATG	4 cut(s)	683, 851, 1135, 1607
CviQI	GTAC	2 cut(s)	805, 2046
DdeI	CTNAG	4 cut(s)	1003, 1219, 1887, 2197
Eam1104I	CTCTTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	660
Eco130I	CCWWGG	4 cut(s)	538, 915, 978, 1799
Eco147I	AGGCCT	3 cut(s)	973, 1804, 1918
Eco24I	GRGCYC	1 cut(s)	477
Eco47I	GGWCC	4 cut(s)	563, 658, 1343, 2238
Eco57I	CTGAAG	6 cut(s)	974, 1277, 1566, 1608, 1912, 2055
EcoNI	CCTNNNNNAGG	1 cut(s)	2166
EcoO109I	RGGNCCY	1 cut(s)	2238
EcoRI	GAATTC	2 cut(s)	364, 379
EcoRII	CCWGG	9 cut(s)	1317, 1411, 1840, 1913, 1918, 1964, 2041, 2167, 2233
EcoT14I	CCWWGG	4 cut(s)	538, 915, 978, 1799
EcoT38I	GRGCYC	1 cut(s)	477
ErhI	CCWWGG	4 cut(s)	538, 915, 978, 1799
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	4 cut(s)	686, 854, 1138, 1610
FalI	AAGNNNNNCTT	2 cut(s)	1792, 1824
FaqI	GGGAC	3 cut(s)	727, 1876, 2224
FatI	CATG	4 cut(s)	682, 850, 1134, 1606
FauI	CCCGC	4 cut(s)	233, 380, 492, 1665
FauNDI	CATATG	1 cut(s)	1867
FblI	GTMKAC	2 cut(s)	934, 1079
FriOI	GRGCYC	1 cut(s)	477
FspBI	CTAG	4 cut(s)	735, 1083, 2244, 2250
GlaI	GCGC	6 cut(s)	298, 314, 840, 842, 986, 988
GsuI	CTGGAG	1 cut(s)	1948
HaeII	RGCGCY	2 cut(s)	300, 316
HaeIII	GGCC	7 cut(s)	973, 1410, 1450, 1630, 1798, 1804, 1918
HapII	CCGG	5 cut(s)	384, 662, 1631, 2125, 2273
HgaI	GACGC	3 cut(s)	51, 360, 411
HhaI	GCGC	6 cut(s)	299, 315, 841, 843, 987, 989
Hin1I	GRCGYC	2 cut(s)	43, 371
Hin1II	CATG	4 cut(s)	686, 854, 1138, 1610
Hin6I	GCGC	6 cut(s)	297, 313, 839, 841, 985, 987
HinP1I	GCGC	6 cut(s)	297, 313, 839, 841, 985, 987
HincII	GTYRAC	2 cut(s)	1239, 1248
HindII	GTYRAC	2 cut(s)	1239, 1248
HpaII	CCGG	5 cut(s)	384, 662, 1631, 2125, 2273
HphI	GGTGA	7 cut(s)	388, 473, 559, 1436, 1482, 1858, 2223
Hpy166II	GTNNAC	6 cut(s)	658, 935, 1061, 1080, 1239, 1248
Hpy188III	TCNNGA	5 cut(s)	561, 608, 674, 1062, 1829
Hpy8I	GTNNAC	6 cut(s)	658, 935, 1061, 1080, 1239, 1248
HpyAV	CCTTC	6 cut(s)	619, 921, 984, 1590, 1623, 1733
HpyCH4III	ACNGT	5 cut(s)	718, 1243, 1735, 1778, 1880
HpyCH4IV	ACGT	1 cut(s)	2217
HpyCH4V	TGCA	9 cut(s)	797, 802, 860, 1310, 1331, 1367, 1514, 1532, 2287
HpyF10VI	GCNNNNNNNGC	8 cut(s)	188, 368, 1016, 1025, 1034, 1288, 1328, 2188
HpyF3I	CTNAG	4 cut(s)	1003, 1219, 1887, 2197
HpySE526I	ACGT	1 cut(s)	2217
Hsp92I	GRCGYC	2 cut(s)	43, 371
Hsp92II	CATG	4 cut(s)	686, 854, 1138, 1610
HspAI	GCGC	6 cut(s)	297, 313, 839, 841, 985, 987
KflI	GGGWCCC	1 cut(s)	2238
LguI	GCTCTTC	1 cut(s)	660
LmnI	GCTCC	7 cut(s)	216, 740, 757, 848, 982, 1314, 1444
Lsp1109I	GCAGC	7 cut(s)	579, 1343, 1351, 1492, 1516, 1654, 2281
LweI	GCATC	1 cut(s)	997
MaeI	CTAG	4 cut(s)	735, 1083, 2244, 2250
MaeII	ACGT	1 cut(s)	2217
MaeIII	GTNAC	3 cut(s)	1348, 1909, 2229
MbiI	CCGCTC	2 cut(s)	211, 432
MflI	RGATCY	8 cut(s)	58, 467, 1374, 1681, 1700, 1815, 2038, 2209
MhlI	GDGCHC	1 cut(s)	477
MlyI	GAGTC	6 cut(s)	272, 1244, 1819, 1978, 2099, 2189
MmeI	TCCRAC	6 cut(s)	135, 168, 306, 372, 405, 534
MroXI	GAANNNNTTC	1 cut(s)	669
MseI	TTAA	7 cut(s)	782, 1124, 1401, 1764, 1874, 2009, 2157
MslI	CAYNNNNRTG	1 cut(s)	540
MspA1I	CMGCKG	1 cut(s)	1660
MspI	CCGG	5 cut(s)	384, 662, 1631, 2125, 2273
Mva1269I	GAATGC	1 cut(s)	799
MvaI	CCWGG	9 cut(s)	1319, 1413, 1842, 1915, 1920, 1966, 2043, 2169, 2235
MvnI	CGCG	5 cut(s)	318, 362, 422, 841, 987
MwoI	GCNNNNNNNGC	8 cut(s)	188, 368, 1016, 1025, 1034, 1288, 1328, 2188
NciI	CCSGG	2 cut(s)	662, 2125
NdeI	CATATG	1 cut(s)	1867
NlaIII	CATG	4 cut(s)	686, 854, 1138, 1610
NlaIV	GGNNCC	7 cut(s)	565, 660, 1132, 1316, 1376, 2239, 2240
NmeAIII	GCCGAG	1 cut(s)	2279
NmuCI	GTSAC	2 cut(s)	1909, 2229
NspI	RCATGY	1 cut(s)	1610
OliI	CACNNNNGTG	1 cut(s)	540
PasI	CCCWGGG	1 cut(s)	1412
PauI	GCGCGC	2 cut(s)	839, 985
PceI	AGGCCT	3 cut(s)	973, 1804, 1918
PciSI	GCTCTTC	1 cut(s)	660
PcsI	WCGNNNNNNNCGW	6 cut(s)	252, 255, 264, 273, 279, 408
PctI	GAATGC	1 cut(s)	799
PdmI	GAANNNNTTC	1 cut(s)	669
PfeI	GAWTC	7 cut(s)	505, 557, 1336, 1709, 1791, 2172, 2261
PflFI	GACNNNGTC	1 cut(s)	1958
PfoI	TCCNGGA	2 cut(s)	1964, 2167
PleI	GAGTC	6 cut(s)	272, 1243, 1819, 1978, 2098, 2189
PpsI	GAGTC	6 cut(s)	272, 1243, 1819, 1978, 2098, 2189
PpuMI	RGGWCCY	1 cut(s)	2238
PshAI	GACNNNNGTC	1 cut(s)	1234
PshBI	ATTAAT	1 cut(s)	1764
Psp5II	RGGWCCY	1 cut(s)	2238
Psp6I	CCWGG	9 cut(s)	1317, 1411, 1840, 1913, 1918, 1964, 2041, 2167, 2233
PspGI	CCWGG	9 cut(s)	1317, 1411, 1840, 1913, 1918, 1964, 2041, 2167, 2233
PspN4I	GGNNCC	7 cut(s)	565, 660, 1132, 1316, 1376, 2239, 2240
PspPI	GGNCC	6 cut(s)	563, 658, 1343, 1409, 1628, 2238
PspPPI	RGGWCCY	1 cut(s)	2238
PsuI	RGATCY	8 cut(s)	58, 467, 1374, 1681, 1700, 1815, 2038, 2209
PsyI	GACNNNGTC	1 cut(s)	1958
PteI	GCGCGC	2 cut(s)	839, 985
RsaI	GTAC	2 cut(s)	806, 2047
RsaNI	GTAC	2 cut(s)	805, 2046
RseI	CAYNNNNRTG	1 cut(s)	540
SapI	GCTCTTC	1 cut(s)	660
SaqAI	TTAA	7 cut(s)	782, 1124, 1401, 1764, 1874, 2009, 2157
Sau96I	GGNCC	6 cut(s)	563, 658, 1343, 1409, 1628, 2238
SchI	GAGTC	6 cut(s)	272, 1244, 1819, 1978, 2099, 2189
SduI	GDGCHC	1 cut(s)	477
SfaNI	GCATC	1 cut(s)	997
SfcI	CTRYAG	2 cut(s)	456, 1284
SinI	GGWCC	4 cut(s)	563, 658, 1343, 2238
SmiMI	CAYNNNNRTG	1 cut(s)	540
SmlI	CTYRAG	3 cut(s)	329, 526, 608
SmoI	CTYRAG	3 cut(s)	329, 526, 608
SpeI	ACTAGT	2 cut(s)	734, 1082
SseBI	AGGCCT	3 cut(s)	973, 1804, 1918
SspMI	CTAG	4 cut(s)	735, 1083, 2244, 2250
StuI	AGGCCT	3 cut(s)	973, 1804, 1918
StyI	CCWWGG	4 cut(s)	538, 915, 978, 1799
TaaI	ACNGT	5 cut(s)	718, 1243, 1735, 1778, 1880
TaiI	ACGT	1 cut(s)	2220
TaqI	TCGA	5 cut(s)	217, 503, 791, 832, 1324
TatI	WGTACW	1 cut(s)	804
TauI	GCSGC	8 cut(s)	185, 188, 191, 231, 297, 318, 422, 435
TfiI	GAWTC	7 cut(s)	505, 557, 1336, 1709, 1791, 2172, 2261
Tru1I	TTAA	7 cut(s)	782, 1124, 1401, 1764, 1874, 2009, 2157
Tru9I	TTAA	7 cut(s)	782, 1124, 1401, 1764, 1874, 2009, 2157
TscAI	CASTG	3 cut(s)	723, 1458, 2085
TseFI	GTSAC	2 cut(s)	1909, 2229
TseI	GCWGC	8 cut(s)	592, 1331, 1364, 1480, 1529, 1667, 2269, 2287
Tsp45I	GTSAC	2 cut(s)	1909, 2229
TspDTI	ATGAA	5 cut(s)	699, 918, 1787, 2055, 2108
TspGWI	ACGGA	3 cut(s)	85, 203, 300
TspRI	CASTG	3 cut(s)	723, 1458, 2085
Tth111I	GACNNNGTC	1 cut(s)	1958
VpaK11BI	GGWCC	4 cut(s)	563, 658, 1343, 2238
VspI	ATTAAT	1 cut(s)	1764
XagI	CCTNNNNNAGG	1 cut(s)	2166
XapI	RAATTY	6 cut(s)	364, 379, 877, 1103, 2011, 2074
XceI	RCATGY	1 cut(s)	1610
XmiI	GTMKAC	2 cut(s)	934, 1079
XmnI	GAANNNNTTC	1 cut(s)	669
XspI	CTAG	4 cut(s)	735, 1083, 2244, 2250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.