Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038972.1

Orthogroup ID

OG0013612

Physical Location & Seq

Genomic Coordinates Reverse (-)

516 .. 1652

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038972.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

atgctggttttcacaactgcccactgcttcctgccttttggtgggcgatgggtagggcttcagtcagatggttatgcaaggagcctggctcgatttgcagcgaatcttggacctgttacttggagaattgctgcacaaaggatccaaaggtctttgcctgctggtgttaagttcggccctgggtgggttggtgaaaatgatgttgctcctcataggccgctggtattagcctcatcctcaaaagagcagccatcttcaccacagcccttgcccattcgtgcaaactcgtcttctgctgcaatatcttgctctattgaaccaaataaagataaattatcagacaaaccttcaggtcataacttgtcagagaaacatgccccttctatttctgcagggccggatgaccatccaagcagtcctcccccactgtctgctgccacctcatcagatcccttaattgctaacagatcccctgaatccctcacaggaaaaggagaaactgttgaaggatcaaactctcgtggtgggattaatatgatgaacagtaatcatggtggaatcaggccaaggcccccttttcagatccatcggagtcctgaaatacaacctggggtgaatggattgaatgggacatatggattaaaccgtcttgctcaggtagggaaacaagttggcgtgaccaggcctggtggcttcagcttccaatcatctcaattgcttgaccaagtctccaggactaatactaacctgactcatccagcgacttcaaacagcttaaattcagaagaaaccaagccctctgaagatccaggtacaaagcagtcttctggttcatattcaaattcagtgaaaaatgagtcattgccagcccgaacatcggggcttcatccccggtcatcttggcgagggtcatcccaaccgattaaacctaatccaggattctctcctcaacagaagcctgactcagttccaccagatctgaacgtcagatttcagtcaccagggtcccctagttctagccgggctgattcaacgcagccggatttagcattgcagctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0002576 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032940 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0046903 GO:0051179 GO:0051234 GO:0051276 GO:0070013 GO:0070775 GO:0070776 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

353

Amino Acids

37.32

Weight (kDa)

9.8

Isoelectric Point (pI)

64.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013612)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16690
malus_domestica	MD05G1135100.v1.1 MD10G1140600.v1.1
prunus_persica	Prupe.8G179000_v2.0.a1
pyrus_communis	pycom05g13170 pycom10g11920
rosa_chinensis	RchiOBHm_Chr6g0280831
rosa_laevigata	RLG00000013027
rosa_multiflora	Rmu_co8368811.1_g000001 Rmu_sc0003153.1_g000023 Rmu_sc0038972.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187590
rosa_rugosa	Rorug06G0134800
rosa_samantha	Rh6AG248200 Rh6BG249700 Rh6CG250900 Rh6DG242500
rosa_wichuraiana	Rw6G021450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	7 cut(s)	136, 149, 443, 462, 517, 577, 800
AcsI	RAATTY	2 cut(s)	778, 841
AcuI	CTGAAG	4 cut(s)	44, 333, 679, 822
AfaI	GTAC	1 cut(s)	814
AfiI	CCNNNNNNNGG	4 cut(s)	41, 184, 877, 935
AgsI	TTSAA	6 cut(s)	317, 506, 625, 768, 840, 1032
AjnI	CCWGG	9 cut(s)	84, 178, 607, 680, 685, 731, 808, 934, 1000
AluBI	AGCT	3 cut(s)	699, 774, 1057
AluI	AGCT	3 cut(s)	699, 774, 1057
Alw26I	GTCTC	1 cut(s)	733
AlwI	GGATC	7 cut(s)	136, 149, 443, 462, 517, 577, 800
AoxI	GGCC	6 cut(s)	175, 215, 395, 563, 569, 683
ApeKI	GCWGC	7 cut(s)	98, 131, 247, 296, 434, 1036, 1054
ApoI	RAATTY	2 cut(s)	778, 841
AseI	ATTAAT	1 cut(s)	531
AspS9I	GGNCC	5 cut(s)	110, 176, 395, 570, 1005
AsuC2I	CCSGG	2 cut(s)	892, 1022
AsuHPI	GGTGA	4 cut(s)	203, 249, 625, 990
AvaII	GGWCC	2 cut(s)	110, 1005
BamHI	GGATCC	1 cut(s)	141
BauI	CACGAG	1 cut(s)	519
BbsI	GAAGAC	2 cut(s)	282, 816
BbvI	GCAGC	6 cut(s)	110, 118, 259, 283, 421, 1048
BccI	CCATC	5 cut(s)	42, 62, 259, 414, 594
BciT130I	CCWGG	9 cut(s)	86, 180, 609, 682, 687, 733, 810, 936, 1002
BcnI	CCSGG	2 cut(s)	892, 1022
BcoDI	GTCTC	1 cut(s)	733
BfaI	CTAG	2 cut(s)	1011, 1017
BfmI	CTRYAG	1 cut(s)	390
BglII	AGATCT	1 cut(s)	976
BisI	GCNGC	8 cut(s)	99, 132, 218, 248, 297, 435, 1037, 1055
BlsI	GCNGC	8 cut(s)	100, 133, 219, 249, 298, 436, 1038, 1056
Bme18I	GGWCC	2 cut(s)	110, 1005
BmgT120I	GGNCC	5 cut(s)	110, 176, 395, 570, 1005
BmiI	GGNNCC	5 cut(s)	83, 143, 572, 1006, 1007
BpiI	GAAGAC	2 cut(s)	282, 816
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
BpmI	CTGGAG	1 cut(s)	715
Bpu10I	CCTNAGC	1 cut(s)	654
BpuMI	CCSGG	2 cut(s)	892, 1022
BsaBI	GATNNNNATC	1 cut(s)	405
BsaJI	CCNNGG	6 cut(s)	178, 179, 566, 608, 890, 1001
BsaXI	ACNNNNNCTCC	4 cut(s)	486, 516, 713, 743
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 184, 877, 935
Bse3DI	GCAATG	2 cut(s)	860, 1049
Bse8I	GATNNNNATC	1 cut(s)	405
BseBI	CCWGG	9 cut(s)	86, 180, 609, 682, 687, 733, 810, 936, 1002
BseDI	CCNNGG	6 cut(s)	178, 179, 566, 608, 890, 1001
BseGI	GGATG	6 cut(s)	233, 406, 406, 754, 886, 911
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	4 cut(s)	41, 184, 877, 935
BseMI	GCAATG	2 cut(s)	860, 1049
BseMII	CTCAG	2 cut(s)	668, 978
BseRI	GAGGAG	2 cut(s)	198, 936
BseXI	GCAGC	6 cut(s)	110, 118, 259, 283, 421, 1048
BsgI	GTGCAG	1 cut(s)	117
BshFI	GGCC	6 cut(s)	177, 217, 397, 565, 571, 685
BsiSI	CCGG	4 cut(s)	398, 892, 1021, 1040
BslFI	GGGAC	2 cut(s)	643, 991
BslI	CCNNNNNNNGG	4 cut(s)	41, 184, 877, 935
BsmAI	GTCTC	1 cut(s)	733
BsmFI	GGGAC	2 cut(s)	643, 991
BsnI	GGCC	6 cut(s)	177, 217, 397, 565, 571, 685
Bsp143I	GATC	7 cut(s)	141, 448, 467, 509, 582, 805, 976
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	6 cut(s)	177, 217, 397, 565, 571, 685
BspCNI	CTCAG	2 cut(s)	667, 977
BspLI	GGNNCC	5 cut(s)	83, 143, 572, 1006, 1007
BspMAI	CTGCAG	1 cut(s)	394
BspPI	GGATC	7 cut(s)	136, 149, 443, 462, 517, 577, 800
BsrDI	GCAATG	2 cut(s)	860, 1049
BssECI	CCNNGG	6 cut(s)	178, 179, 566, 608, 890, 1001
BssMI	GATC	7 cut(s)	141, 448, 467, 509, 582, 805, 976
BssSI	CACGAG	1 cut(s)	519
BssT1I	CCWWGG	1 cut(s)	566
Bst2BI	CACGAG	1 cut(s)	519
Bst2UI	CCWGG	9 cut(s)	86, 180, 609, 682, 687, 733, 810, 936, 1002
Bst4CI	ACNGT	4 cut(s)	429, 502, 545, 647
BstC8I	GCNNGC	2 cut(s)	159, 867
BstDEI	CTNAG	2 cut(s)	654, 964
BstENI	CCTNNNNNAGG	1 cut(s)	933
BstF5I	GGATG	6 cut(s)	233, 406, 406, 754, 886, 911
BstKTI	GATC	7 cut(s)	144, 451, 470, 512, 585, 808, 979
BstMAI	GTCTC	1 cut(s)	733
BstMBI	GATC	7 cut(s)	141, 448, 467, 509, 582, 805, 976
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	9 cut(s)	86, 180, 609, 682, 687, 733, 810, 936, 1002
BstNSI	RCATGY	1 cut(s)	377
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	6 cut(s)	110, 118, 259, 283, 421, 1048
BstV2I	GAAGAC	2 cut(s)	282, 816
BstX2I	RGATCY	6 cut(s)	141, 448, 467, 582, 805, 976
BstYI	RGATCY	6 cut(s)	141, 448, 467, 582, 805, 976
BsuRI	GGCC	6 cut(s)	177, 217, 397, 565, 571, 685
BtgZI	GCGATG	1 cut(s)	61
BtsCI	GGATG	6 cut(s)	233, 406, 406, 754, 886, 911
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	3 cut(s)	22, 425, 852
Cac8I	GCNNGC	2 cut(s)	159, 867
Cfr13I	GGNCC	5 cut(s)	110, 176, 395, 570, 1005
Csp6I	GTAC	1 cut(s)	813
CspCI	CAANNNNNGTGG	2 cut(s)	249, 284
CviAII	CATG	2 cut(s)	374, 551
CviQI	GTAC	1 cut(s)	813
DdeI	CTNAG	2 cut(s)	654, 964
DpnI	GATC	7 cut(s)	143, 450, 469, 511, 584, 807, 978
DpnII	GATC	7 cut(s)	141, 448, 467, 509, 582, 805, 976
Eco130I	CCWWGG	1 cut(s)	566
Eco147I	AGGCCT	1 cut(s)	685
Eco47I	GGWCC	2 cut(s)	110, 1005
Eco57I	CTGAAG	4 cut(s)	44, 333, 679, 822
EcoNI	CCTNNNNNAGG	1 cut(s)	933
EcoO109I	RGGNCCY	2 cut(s)	570, 1005
EcoRII	CCWGG	9 cut(s)	84, 178, 607, 680, 685, 731, 808, 934, 1000
EcoT14I	CCWWGG	1 cut(s)	566
ErhI	CCWWGG	1 cut(s)	566
FaeI	CATG	2 cut(s)	377, 554
FaiI	YATR	9 cut(s)	75, 213, 357, 375, 536, 552, 634, 636, 835
FalI	AAGNNNNNCTT	2 cut(s)	559, 591
FaqI	GGGAC	2 cut(s)	643, 991
FatI	CATG	2 cut(s)	373, 550
FauNDI	CATATG	1 cut(s)	634
Fnu4HI	GCNGC	8 cut(s)	99, 132, 218, 248, 297, 435, 1037, 1055
FokI	GGATG	6 cut(s)	220, 393, 413, 741, 873, 898
Fsp4HI	GCNGC	8 cut(s)	99, 132, 218, 248, 297, 435, 1037, 1055
FspBI	CTAG	2 cut(s)	1011, 1017
GluI	GCNGC	8 cut(s)	99, 132, 218, 248, 297, 435, 1037, 1055
GsuI	CTGGAG	1 cut(s)	715
HaeIII	GGCC	6 cut(s)	177, 217, 397, 565, 571, 685
HapII	CCGG	4 cut(s)	398, 892, 1021, 1040
Hin1II	CATG	2 cut(s)	377, 554
HinfI	GANTC	9 cut(s)	103, 476, 558, 592, 751, 857, 939, 962, 1028
HpaII	CCGG	4 cut(s)	398, 892, 1021, 1040
HphI	GGTGA	4 cut(s)	203, 249, 625, 990
Hpy188III	TCNNGA	1 cut(s)	596
HpyAV	CCTTC	3 cut(s)	357, 390, 500
HpyCH4III	ACNGT	4 cut(s)	429, 502, 545, 647
HpyCH4IV	ACGT	1 cut(s)	984
HpyCH4V	TGCA	7 cut(s)	77, 98, 134, 281, 299, 392, 1054
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	2 cut(s)	654, 964
HpySE526I	ACGT	1 cut(s)	984
Hsp92II	CATG	2 cut(s)	377, 554
KflI	GGGWCCC	1 cut(s)	1005
Kzo9I	GATC	7 cut(s)	141, 448, 467, 509, 582, 805, 976
LmnI	GCTCC	2 cut(s)	81, 211
Lsp1109I	GCAGC	6 cut(s)	110, 118, 259, 283, 421, 1048
MaeI	CTAG	2 cut(s)	1011, 1017
MaeII	ACGT	1 cut(s)	984
MaeIII	GTNAC	3 cut(s)	115, 676, 996
MalI	GATC	7 cut(s)	143, 450, 469, 511, 584, 807, 978
MboI	GATC	7 cut(s)	141, 448, 467, 509, 582, 805, 976
MboII	GAAGA	5 cut(s)	246, 282, 797, 815, 816
MfeI	CAATTG	1 cut(s)	713
MflI	RGATCY	6 cut(s)	141, 448, 467, 582, 805, 976
MluCI	AATT	6 cut(s)	126, 332, 456, 713, 778, 841
MlyI	GAGTC	4 cut(s)	601, 745, 866, 956
MnlI	CCTC	9 cut(s)	219, 241, 247, 429, 451, 491, 808, 899, 957
MseI	TTAA	6 cut(s)	168, 455, 531, 641, 776, 924
MspA1I	CMGCKG	1 cut(s)	220
MspI	CCGG	4 cut(s)	398, 892, 1021, 1040
MunI	CAATTG	1 cut(s)	713
MvaI	CCWGG	9 cut(s)	86, 180, 609, 682, 687, 733, 810, 936, 1002
MwoI	GCNNNNNNNGC	1 cut(s)	95
NciI	CCSGG	2 cut(s)	892, 1022
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	7 cut(s)	141, 448, 467, 509, 582, 805, 976
NlaIII	CATG	2 cut(s)	377, 554
NlaIV	GGNNCC	5 cut(s)	83, 143, 572, 1006, 1007
NmuCI	GTSAC	2 cut(s)	676, 996
NspI	RCATGY	1 cut(s)	377
PasI	CCCWGGG	1 cut(s)	179
PceI	AGGCCT	1 cut(s)	685
PfeI	GAWTC	5 cut(s)	103, 476, 558, 939, 1028
PflFI	GACNNNGTC	1 cut(s)	725
PfoI	TCCNGGA	2 cut(s)	731, 934
PkrI	GCNGC	8 cut(s)	100, 133, 219, 249, 298, 436, 1038, 1056
PleI	GAGTC	4 cut(s)	600, 745, 865, 956
PpsI	GAGTC	4 cut(s)	600, 745, 865, 956
PpuMI	RGGWCCY	1 cut(s)	1005
PshBI	ATTAAT	1 cut(s)	531
Psp5II	RGGWCCY	1 cut(s)	1005
Psp6I	CCWGG	9 cut(s)	84, 178, 607, 680, 685, 731, 808, 934, 1000
PspGI	CCWGG	9 cut(s)	84, 178, 607, 680, 685, 731, 808, 934, 1000
PspN4I	GGNNCC	5 cut(s)	83, 143, 572, 1006, 1007
PspPI	GGNCC	5 cut(s)	110, 176, 395, 570, 1005
PspPPI	RGGWCCY	1 cut(s)	1005
PstI	CTGCAG	1 cut(s)	394
PsuI	RGATCY	6 cut(s)	141, 448, 467, 582, 805, 976
PsyI	GACNNNGTC	1 cut(s)	725
RsaI	GTAC	1 cut(s)	814
RsaNI	GTAC	1 cut(s)	813
SaqAI	TTAA	6 cut(s)	168, 455, 531, 641, 776, 924
SatI	GCNGC	8 cut(s)	99, 132, 218, 248, 297, 435, 1037, 1055
Sau3AI	GATC	7 cut(s)	141, 448, 467, 509, 582, 805, 976
Sau96I	GGNCC	5 cut(s)	110, 176, 395, 570, 1005
SchI	GAGTC	4 cut(s)	601, 745, 866, 956
SfcI	CTRYAG	1 cut(s)	390
SinI	GGWCC	2 cut(s)	110, 1005
Sse9I	AATT	6 cut(s)	126, 332, 456, 713, 778, 841
SseBI	AGGCCT	1 cut(s)	685
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	2 cut(s)	1011, 1017
StuI	AGGCCT	1 cut(s)	685
StyI	CCWWGG	1 cut(s)	566
TaaI	ACNGT	4 cut(s)	429, 502, 545, 647
TaiI	ACGT	1 cut(s)	987
TaqI	TCGA	1 cut(s)	91
TasI	AATT	6 cut(s)	126, 332, 456, 713, 778, 841
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	5 cut(s)	103, 476, 558, 939, 1028
Tru1I	TTAA	6 cut(s)	168, 455, 531, 641, 776, 924
Tru9I	TTAA	6 cut(s)	168, 455, 531, 641, 776, 924
TscAI	CASTG	3 cut(s)	29, 432, 852
TseFI	GTSAC	2 cut(s)	676, 996
TseI	GCWGC	7 cut(s)	98, 131, 247, 296, 434, 1036, 1054
Tsp45I	GTSAC	2 cut(s)	676, 996
TspDTI	ATGAA	3 cut(s)	554, 822, 875
TspRI	CASTG	3 cut(s)	29, 432, 852
Tth111I	GACNNNGTC	1 cut(s)	725
VpaK11BI	GGWCC	2 cut(s)	110, 1005
VspI	ATTAAT	1 cut(s)	531
XagI	CCTNNNNNAGG	1 cut(s)	933
XapI	RAATTY	2 cut(s)	778, 841
XceI	RCATGY	1 cut(s)	377
XspI	CTAG	2 cut(s)	1011, 1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.