Bromodomain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g16690 |
| malus_domestica | MD05G1135100.v1.1 MD10G1140600.v1.1 |
| prunus_persica | Prupe.8G179000_v2.0.a1 |
| pyrus_communis | pycom05g13170 pycom10g11920 |
| rosa_chinensis | RchiOBHm_Chr6g0280831 |
| rosa_laevigata | RLG00000013027 |
| rosa_multiflora | Rmu_co8368811.1_g000001 Rmu_sc0003153.1_g000023 Rmu_sc0038972.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00187590 |
| rosa_rugosa | Rorug06G0134800 |
| rosa_samantha | Rh6AG248200 Rh6BG249700 Rh6CG250900 Rh6DG242500 |
| rosa_wichuraiana | Rw6G021450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 178, 323 |
| AccII | CGCG | 2 cut(s) | 85, 231 |
| AciI | CCGC | 1 cut(s) | 695 |
| AclWI | GGATC | 7 cut(s) | 613, 626, 920, 939, 994, 1054, 1277 |
| AcsI | RAATTY | 4 cut(s) | 121, 347, 1255, 1318 |
| AcuI | CTGAAG | 5 cut(s) | 218, 521, 810, 1156, 1299 |
| AfaI | GTAC | 2 cut(s) | 50, 1291 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 402, 661, 1354, 1412 |
| AgsI | TTSAA | 7 cut(s) | 119, 794, 983, 1102, 1245, 1317, 1509 |
| AhlI | ACTAGT | 1 cut(s) | 326 |
| AjnI | CCWGG | 9 cut(s) | 561, 655, 1084, 1157, 1162, 1208, 1285, 1411, 1477 |
| AluBI | AGCT | 5 cut(s) | 100, 520, 1176, 1251, 1534 |
| AluI | AGCT | 5 cut(s) | 100, 520, 1176, 1251, 1534 |
| Alw26I | GTCTC | 1 cut(s) | 1210 |
| AlwI | GGATC | 7 cut(s) | 613, 626, 920, 939, 994, 1054, 1277 |
| AoxI | GGCC | 6 cut(s) | 215, 652, 692, 872, 1040, 1160 |
| ApeKI | GCWGC | 7 cut(s) | 575, 608, 724, 773, 911, 1513, 1531 |
| ApoI | RAATTY | 4 cut(s) | 121, 347, 1255, 1318 |
| AseI | ATTAAT | 1 cut(s) | 1008 |
| AspLEI | GCGC | 4 cut(s) | 85, 87, 231, 233 |
| AspS9I | GGNCC | 4 cut(s) | 587, 653, 872, 1482 |
| AsuC2I | CCSGG | 2 cut(s) | 1369, 1499 |
| AsuHPI | GGTGA | 4 cut(s) | 680, 726, 1102, 1467 |
| AvaII | GGWCC | 2 cut(s) | 587, 1482 |
| BamHI | GGATCC | 1 cut(s) | 618 |
| BauI | CACGAG | 1 cut(s) | 996 |
| BbsI | GAAGAC | 2 cut(s) | 759, 1293 |
| BbvI | GCAGC | 6 cut(s) | 587, 595, 736, 760, 898, 1525 |
| BccI | CCATC | 5 cut(s) | 98, 539, 736, 891, 1071 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 25, 59 |
| BciT130I | CCWGG | 9 cut(s) | 563, 657, 1086, 1159, 1164, 1210, 1287, 1413, 1479 |
| BcnI | CCSGG | 2 cut(s) | 1369, 1499 |
| BcoDI | GTCTC | 1 cut(s) | 1210 |
| BcuI | ACTAGT | 1 cut(s) | 326 |
| BfaI | CTAG | 3 cut(s) | 327, 1488, 1494 |
| BfmI | CTRYAG | 2 cut(s) | 528, 867 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 532 |
| BglII | AGATCT | 1 cut(s) | 1453 |
| BisI | GCNGC | 8 cut(s) | 576, 609, 695, 725, 774, 912, 1514, 1532 |
| BlsI | GCNGC | 8 cut(s) | 577, 610, 696, 726, 775, 913, 1515, 1533 |
| Bme18I | GGWCC | 2 cut(s) | 587, 1482 |
| BmgT120I | GGNCC | 4 cut(s) | 587, 653, 872, 1482 |
| BmiI | GGNNCC | 5 cut(s) | 376, 560, 620, 1483, 1484 |
| BmrI | ACTGGG | 2 cut(s) | 276, 411 |
| BmsI | GCATC | 1 cut(s) | 241 |
| BmuI | ACTGGG | 2 cut(s) | 276, 411 |
| BoxI | GACNNNNGTC | 1 cut(s) | 478 |
| BpiI | GAAGAC | 2 cut(s) | 759, 1293 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 550, 582 |
| BpmI | CTGGAG | 1 cut(s) | 1192 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1131 |
| BpuMI | CCSGG | 2 cut(s) | 1369, 1499 |
| BsaBI | GATNNNNATC | 1 cut(s) | 882 |
| BsaJI | CCNNGG | 8 cut(s) | 159, 222, 462, 655, 656, 1085, 1367, 1478 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 963, 993, 1190, 1220 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 402, 661, 1354, 1412 |
| Bse1I | ACTGG | 2 cut(s) | 271, 406 |
| Bse3DI | GCAATG | 3 cut(s) | 48, 1337, 1526 |
| Bse8I | GATNNNNATC | 1 cut(s) | 882 |
| BseBI | CCWGG | 9 cut(s) | 563, 657, 1086, 1159, 1164, 1210, 1287, 1413, 1479 |
| BseDI | CCNNGG | 8 cut(s) | 159, 222, 462, 655, 656, 1085, 1367, 1478 |
| BseGI | GGATG | 9 cut(s) | 19, 90, 457, 710, 883, 883, 1231, 1363, 1388 |
| BseJI | GATNNNNATC | 1 cut(s) | 882 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 402, 661, 1354, 1412 |
| BseMI | GCAATG | 3 cut(s) | 48, 1337, 1526 |
| BseMII | CTCAG | 3 cut(s) | 261, 1145, 1455 |
| BseNI | ACTGG | 2 cut(s) | 271, 406 |
| BsePI | GCGCGC | 2 cut(s) | 83, 229 |
| BseRI | GAGGAG | 2 cut(s) | 675, 1413 |
| BseXI | GCAGC | 6 cut(s) | 587, 595, 736, 760, 898, 1525 |
| BsgI | GTGCAG | 1 cut(s) | 594 |
| Bsh1236I | CGCG | 2 cut(s) | 85, 231 |
| BshFI | GGCC | 6 cut(s) | 217, 654, 694, 874, 1042, 1162 |
| BsiSI | CCGG | 4 cut(s) | 875, 1369, 1498, 1517 |
| BslFI | GGGAC | 2 cut(s) | 1120, 1468 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 402, 661, 1354, 1412 |
| BsmAI | GTCTC | 1 cut(s) | 1210 |
| BsmFI | GGGAC | 2 cut(s) | 1120, 1468 |
| BsmI | GAATGC | 1 cut(s) | 43 |
| BsnI | GGCC | 6 cut(s) | 217, 654, 694, 874, 1042, 1162 |
| BspACI | CCGC | 1 cut(s) | 695 |
| BspANI | GGCC | 6 cut(s) | 217, 654, 694, 874, 1042, 1162 |
| BspCNI | CTCAG | 3 cut(s) | 260, 1144, 1454 |
| BspFNI | CGCG | 2 cut(s) | 85, 231 |
| BspLI | GGNNCC | 5 cut(s) | 376, 560, 620, 1483, 1484 |
| BspMAI | CTGCAG | 1 cut(s) | 871 |
| BspPI | GGATC | 7 cut(s) | 613, 626, 920, 939, 994, 1054, 1277 |
| BsrDI | GCAATG | 3 cut(s) | 48, 1337, 1526 |
| BsrI | ACTGG | 2 cut(s) | 271, 406 |
| BssECI | CCNNGG | 8 cut(s) | 159, 222, 462, 655, 656, 1085, 1367, 1478 |
| BssHII | GCGCGC | 2 cut(s) | 83, 229 |
| BssNAI | GTATAC | 1 cut(s) | 324 |
| BssSI | CACGAG | 1 cut(s) | 996 |
| BssT1I | CCWWGG | 2 cut(s) | 159, 222 |
| Bst1107I | GTATAC | 1 cut(s) | 324 |
| Bst2BI | CACGAG | 1 cut(s) | 996 |
| Bst2UI | CCWGG | 9 cut(s) | 563, 657, 1086, 1159, 1164, 1210, 1287, 1413, 1479 |
| Bst4CI | ACNGT | 5 cut(s) | 487, 906, 979, 1022, 1124 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 278 |
| BstC8I | GCNNGC | 6 cut(s) | 85, 102, 215, 231, 636, 1344 |
| BstDEI | CTNAG | 3 cut(s) | 247, 1131, 1441 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1410 |
| BstF5I | GGATG | 9 cut(s) | 19, 90, 457, 710, 883, 883, 1231, 1363, 1388 |
| BstFNI | CGCG | 2 cut(s) | 85, 231 |
| BstHHI | GCGC | 4 cut(s) | 85, 87, 231, 233 |
| BstMAI | GTCTC | 1 cut(s) | 1210 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 260, 269, 278, 532, 572 |
| BstNI | CCWGG | 9 cut(s) | 563, 657, 1086, 1159, 1164, 1210, 1287, 1413, 1479 |
| BstNSI | RCATGY | 1 cut(s) | 854 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 478 |
| BstSFI | CTRYAG | 2 cut(s) | 528, 867 |
| BstUI | CGCG | 2 cut(s) | 85, 231 |
| BstV1I | GCAGC | 6 cut(s) | 587, 595, 736, 760, 898, 1525 |
| BstV2I | GAAGAC | 2 cut(s) | 759, 1293 |
| BstX2I | RGATCY | 6 cut(s) | 618, 925, 944, 1059, 1282, 1453 |
| BstYI | RGATCY | 6 cut(s) | 618, 925, 944, 1059, 1282, 1453 |
| BstZ17I | GTATAC | 1 cut(s) | 324 |
| BsuRI | GGCC | 6 cut(s) | 217, 654, 694, 874, 1042, 1162 |
| BtsCI | GGATG | 9 cut(s) | 19, 90, 457, 710, 883, 883, 1231, 1363, 1388 |
| BtsIMutI | CAGTG | 2 cut(s) | 902, 1329 |
| Cac8I | GCNNGC | 6 cut(s) | 85, 102, 215, 231, 636, 1344 |
| CfoI | GCGC | 4 cut(s) | 85, 87, 231, 233 |
| Cfr13I | GGNCC | 4 cut(s) | 587, 653, 872, 1482 |
| Csp6I | GTAC | 2 cut(s) | 49, 1290 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 726, 761 |
| CviAII | CATG | 4 cut(s) | 95, 379, 851, 1028 |
| CviQI | GTAC | 2 cut(s) | 49, 1290 |
| DdeI | CTNAG | 3 cut(s) | 247, 1131, 1441 |
| Eco130I | CCWWGG | 2 cut(s) | 159, 222 |
| Eco147I | AGGCCT | 2 cut(s) | 217, 1162 |
| Eco47I | GGWCC | 2 cut(s) | 587, 1482 |
| Eco57I | CTGAAG | 5 cut(s) | 218, 521, 810, 1156, 1299 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1410 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1482 |
| EcoRII | CCWGG | 9 cut(s) | 561, 655, 1084, 1157, 1162, 1208, 1285, 1411, 1477 |
| EcoT14I | CCWWGG | 2 cut(s) | 159, 222 |
| ErhI | CCWWGG | 2 cut(s) | 159, 222 |
| FaeI | CATG | 4 cut(s) | 98, 382, 854, 1031 |
| FaqI | GGGAC | 2 cut(s) | 1120, 1468 |
| FatI | CATG | 4 cut(s) | 94, 378, 850, 1027 |
| FauNDI | CATATG | 1 cut(s) | 1111 |
| FblI | GTMKAC | 2 cut(s) | 178, 323 |
| Fnu4HI | GCNGC | 8 cut(s) | 576, 609, 695, 725, 774, 912, 1514, 1532 |
| FokI | GGATG | 9 cut(s) | 26, 77, 444, 697, 870, 890, 1218, 1350, 1375 |
| Fsp4HI | GCNGC | 8 cut(s) | 576, 609, 695, 725, 774, 912, 1514, 1532 |
| FspBI | CTAG | 3 cut(s) | 327, 1488, 1494 |
| GlaI | GCGC | 4 cut(s) | 84, 86, 230, 232 |
| GluI | GCNGC | 8 cut(s) | 576, 609, 695, 725, 774, 912, 1514, 1532 |
| GsuI | CTGGAG | 1 cut(s) | 1192 |
| HaeIII | GGCC | 6 cut(s) | 217, 654, 694, 874, 1042, 1162 |
| HapII | CCGG | 4 cut(s) | 875, 1369, 1498, 1517 |
| HhaI | GCGC | 4 cut(s) | 85, 87, 231, 233 |
| Hin1II | CATG | 4 cut(s) | 98, 382, 854, 1031 |
| Hin6I | GCGC | 4 cut(s) | 83, 85, 229, 231 |
| HinP1I | GCGC | 4 cut(s) | 83, 85, 229, 231 |
| HincII | GTYRAC | 2 cut(s) | 483, 492 |
| HindII | GTYRAC | 2 cut(s) | 483, 492 |
| HpaII | CCGG | 4 cut(s) | 875, 1369, 1498, 1517 |
| HphI | GGTGA | 4 cut(s) | 680, 726, 1102, 1467 |
| Hpy166II | GTNNAC | 5 cut(s) | 179, 305, 324, 483, 492 |
| Hpy188III | TCNNGA | 3 cut(s) | 306, 506, 1073 |
| Hpy8I | GTNNAC | 5 cut(s) | 179, 305, 324, 483, 492 |
| HpyAV | CCTTC | 5 cut(s) | 165, 228, 834, 867, 977 |
| HpyCH4III | ACNGT | 5 cut(s) | 487, 906, 979, 1022, 1124 |
| HpyCH4IV | ACGT | 1 cut(s) | 1461 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 260, 269, 278, 532, 572 |
| HpyF3I | CTNAG | 3 cut(s) | 247, 1131, 1441 |
| HpySE526I | ACGT | 1 cut(s) | 1461 |
| Hsp92II | CATG | 4 cut(s) | 98, 382, 854, 1031 |
| HspAI | GCGC | 4 cut(s) | 83, 85, 229, 231 |
| KflI | GGGWCCC | 1 cut(s) | 1482 |
| LmnI | GCTCC | 4 cut(s) | 92, 226, 558, 688 |
| Lsp1109I | GCAGC | 6 cut(s) | 587, 595, 736, 760, 898, 1525 |
| LweI | GCATC | 1 cut(s) | 241 |
| MaeI | CTAG | 3 cut(s) | 327, 1488, 1494 |
| MaeII | ACGT | 1 cut(s) | 1461 |
| MaeIII | GTNAC | 3 cut(s) | 592, 1153, 1473 |
| MboII | GAAGA | 6 cut(s) | 211, 723, 759, 1274, 1292, 1293 |
| MfeI | CAATTG | 1 cut(s) | 1190 |
| MflI | RGATCY | 6 cut(s) | 618, 925, 944, 1059, 1282, 1453 |
| MlyI | GAGTC | 5 cut(s) | 488, 1078, 1222, 1343, 1433 |
| MseI | TTAA | 8 cut(s) | 26, 368, 645, 932, 1008, 1118, 1253, 1401 |
| MspA1I | CMGCKG | 1 cut(s) | 697 |
| MspI | CCGG | 4 cut(s) | 875, 1369, 1498, 1517 |
| MunI | CAATTG | 1 cut(s) | 1190 |
| Mva1269I | GAATGC | 1 cut(s) | 43 |
| MvaI | CCWGG | 9 cut(s) | 563, 657, 1086, 1159, 1164, 1210, 1287, 1413, 1479 |
| MvnI | CGCG | 2 cut(s) | 85, 231 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 260, 269, 278, 532, 572 |
| NciI | CCSGG | 2 cut(s) | 1369, 1499 |
| NdeI | CATATG | 1 cut(s) | 1111 |
| NlaIII | CATG | 4 cut(s) | 98, 382, 854, 1031 |
| NlaIV | GGNNCC | 5 cut(s) | 376, 560, 620, 1483, 1484 |
| NmeAIII | GCCGAG | 1 cut(s) | 443 |
| NmuCI | GTSAC | 2 cut(s) | 1153, 1473 |
| NspI | RCATGY | 1 cut(s) | 854 |
| PasI | CCCWGGG | 1 cut(s) | 656 |
| PauI | GCGCGC | 2 cut(s) | 83, 229 |
| PceI | AGGCCT | 2 cut(s) | 217, 1162 |
| PctI | GAATGC | 1 cut(s) | 43 |
| PfeI | GAWTC | 5 cut(s) | 580, 953, 1035, 1416, 1505 |
| PflFI | GACNNNGTC | 1 cut(s) | 1202 |
| PfoI | TCCNGGA | 2 cut(s) | 1208, 1411 |
| PkrI | GCNGC | 8 cut(s) | 577, 610, 696, 726, 775, 913, 1515, 1533 |
| PleI | GAGTC | 5 cut(s) | 487, 1077, 1222, 1342, 1433 |
| PpsI | GAGTC | 5 cut(s) | 487, 1077, 1222, 1342, 1433 |
| PpuMI | RGGWCCY | 1 cut(s) | 1482 |
| PshAI | GACNNNNGTC | 1 cut(s) | 478 |
| PshBI | ATTAAT | 1 cut(s) | 1008 |
| Psp5II | RGGWCCY | 1 cut(s) | 1482 |
| Psp6I | CCWGG | 9 cut(s) | 561, 655, 1084, 1157, 1162, 1208, 1285, 1411, 1477 |
| PspGI | CCWGG | 9 cut(s) | 561, 655, 1084, 1157, 1162, 1208, 1285, 1411, 1477 |
| PspN4I | GGNNCC | 5 cut(s) | 376, 560, 620, 1483, 1484 |
| PspPI | GGNCC | 4 cut(s) | 587, 653, 872, 1482 |
| PspPPI | RGGWCCY | 1 cut(s) | 1482 |
| PstI | CTGCAG | 1 cut(s) | 871 |
| PsuI | RGATCY | 6 cut(s) | 618, 925, 944, 1059, 1282, 1453 |
| PsyI | GACNNNGTC | 1 cut(s) | 1202 |
| PteI | GCGCGC | 2 cut(s) | 83, 229 |
| RsaI | GTAC | 2 cut(s) | 50, 1291 |
| RsaNI | GTAC | 2 cut(s) | 49, 1290 |
| SaqAI | TTAA | 8 cut(s) | 26, 368, 645, 932, 1008, 1118, 1253, 1401 |
| SatI | GCNGC | 8 cut(s) | 576, 609, 695, 725, 774, 912, 1514, 1532 |
| Sau96I | GGNCC | 4 cut(s) | 587, 653, 872, 1482 |
| SchI | GAGTC | 5 cut(s) | 488, 1078, 1222, 1343, 1433 |
| SfaNI | GCATC | 1 cut(s) | 241 |
| SfcI | CTRYAG | 2 cut(s) | 528, 867 |
| SinI | GGWCC | 2 cut(s) | 587, 1482 |
| SpeI | ACTAGT | 1 cut(s) | 326 |
| SseBI | AGGCCT | 2 cut(s) | 217, 1162 |
| SsiI | CCGC | 1 cut(s) | 695 |
| SspMI | CTAG | 3 cut(s) | 327, 1488, 1494 |
| StuI | AGGCCT | 2 cut(s) | 217, 1162 |
| StyI | CCWWGG | 2 cut(s) | 159, 222 |
| TaaI | ACNGT | 5 cut(s) | 487, 906, 979, 1022, 1124 |
| TaiI | ACGT | 1 cut(s) | 1464 |
| TaqI | TCGA | 4 cut(s) | 35, 76, 505, 568 |
| TatI | WGTACW | 1 cut(s) | 48 |
| TauI | GCSGC | 1 cut(s) | 697 |
| TfiI | GAWTC | 5 cut(s) | 580, 953, 1035, 1416, 1505 |
| Tru1I | TTAA | 8 cut(s) | 26, 368, 645, 932, 1008, 1118, 1253, 1401 |
| Tru9I | TTAA | 8 cut(s) | 26, 368, 645, 932, 1008, 1118, 1253, 1401 |
| TscAI | CASTG | 2 cut(s) | 909, 1329 |
| TseFI | GTSAC | 2 cut(s) | 1153, 1473 |
| TseI | GCWGC | 7 cut(s) | 575, 608, 724, 773, 911, 1513, 1531 |
| Tsp45I | GTSAC | 2 cut(s) | 1153, 1473 |
| TspDTI | ATGAA | 4 cut(s) | 162, 1031, 1299, 1352 |
| TspRI | CASTG | 2 cut(s) | 909, 1329 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1202 |
| VpaK11BI | GGWCC | 2 cut(s) | 587, 1482 |
| VspI | ATTAAT | 1 cut(s) | 1008 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1410 |
| XapI | RAATTY | 4 cut(s) | 121, 347, 1255, 1318 |
| XceI | RCATGY | 1 cut(s) | 854 |
| XmiI | GTMKAC | 2 cut(s) | 178, 323 |
| XspI | CTAG | 3 cut(s) | 327, 1488, 1494 |