Rmu_sc0003153.1_g000023

Bromodomain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003153.1
Physical Location & Seq
Reverse (-)
84097 .. 86320
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003153.1_g000023.1.cds

Sequence Viewer

Length: 1539 bp
atgatcttgcaggatgacattttcttaatttgctcgaatgcaatgcagtacaatgccccagatactatatattttcgacaggcgcgctccatccatgagcttgcgaaaaagaactttgaaaatttgaggcaagatagtgatgataatgaaccagaacccaaggttgtaagaaggggtagaccaccaaccaaaaatctgaagaaaccacttggcaggccttccttggagcgcgctggttcagagttctcagatgccactctcgctactggggcagaaaatgccatattgtccaattatgatcgttcacgaagtaatgatgtgtatactagttggttggctgataacaaatttgagaggaatgatgacttaacaggttccatgttgagaggtaattccaagactgggagaaagcagtttgtatttgatgagaacaagcgtaatacatatctacactctcatccctcggctaatggacgagagtcaactgtgttgactacatttgatcgagaaagaaaacagctaatgcctgtagggcttcagtcagatggttatgcaaggagcctggctcgatttgcagcgaatcttggacctgttacttggagaattgctgcacaaaggatccaaaggtctttgcctgctggtgttaagttcggccctgggtgggttggtgaaaatgatgttgctcctcataggccgctggtattagcctcatcctcaaaagagcagccatcttcaccacagcccttgcccattcgtgcaaactcgtcttctgctgcaatatcttgctctattgaaccaaataaagataaattatcagacaaaccttcaggtcataacttgtcagagaaacatgccccttctatttctgcagggccggatgaccatccaagcagtcctcccccactgtctgctgccacctcatcagatcccttaattgctaacagatcccctgaatccctcacaggaaaaggagaaactgttgaaggatcaaactctcgtggtgggattaatatgatgaacagtaatcatggtggaatcaggccaaagcccccttttcagatccatcggagtcctgaaatacaacctggggtgaatggattgaatgggacatatggattaaaccgtcttgctcaggtagggaaacaagttggcgtgaccaggcctggtggcttcagcttccaatcatctcaattgcttgaccaagtctccaggactaatactaacctgactcatccagcgacttcaaacagcttaaattcagaagaaaccaagccctctgaagatccaggtacaaagcagtcttctggttcatattcaaattcagtgaaaaatgagtcattgccagcccgaacatcggggcttcatccccggtcatcttggcgagggtcatcccaaccgattaaacctaatccaggattctctcctcaacagaagcctgactcagttccaccagatctgaacgtcagatttcagtcaccagggtcccctagttctagccgggctgattcaacgcagccggatttagcattgcagctctaa

Protein Analysis

512

Amino Acids

55.52

Weight (kDa)

9.53

Isoelectric Point (pI)

59.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 178, 323
AccII CGCG 2 cut(s) 85, 231
AciI CCGC 1 cut(s) 695
AclWI GGATC 7 cut(s) 613, 626, 920, 939, 994, 1054, 1277
AcsI RAATTY 4 cut(s) 121, 347, 1255, 1318
AcuI CTGAAG 5 cut(s) 218, 521, 810, 1156, 1299
AfaI GTAC 2 cut(s) 50, 1291
AfiI CCNNNNNNNGG 4 cut(s) 402, 661, 1354, 1412
AgsI TTSAA 7 cut(s) 119, 794, 983, 1102, 1245, 1317, 1509
AhlI ACTAGT 1 cut(s) 326
AjnI CCWGG 9 cut(s) 561, 655, 1084, 1157, 1162, 1208, 1285, 1411, 1477
AluBI AGCT 5 cut(s) 100, 520, 1176, 1251, 1534
AluI AGCT 5 cut(s) 100, 520, 1176, 1251, 1534
Alw26I GTCTC 1 cut(s) 1210
AlwI GGATC 7 cut(s) 613, 626, 920, 939, 994, 1054, 1277
AoxI GGCC 6 cut(s) 215, 652, 692, 872, 1040, 1160
ApeKI GCWGC 7 cut(s) 575, 608, 724, 773, 911, 1513, 1531
ApoI RAATTY 4 cut(s) 121, 347, 1255, 1318
AseI ATTAAT 1 cut(s) 1008
AspLEI GCGC 4 cut(s) 85, 87, 231, 233
AspS9I GGNCC 4 cut(s) 587, 653, 872, 1482
AsuC2I CCSGG 2 cut(s) 1369, 1499
AsuHPI GGTGA 4 cut(s) 680, 726, 1102, 1467
AvaII GGWCC 2 cut(s) 587, 1482
BamHI GGATCC 1 cut(s) 618
BauI CACGAG 1 cut(s) 996
BbsI GAAGAC 2 cut(s) 759, 1293
BbvI GCAGC 6 cut(s) 587, 595, 736, 760, 898, 1525
BccI CCATC 5 cut(s) 98, 539, 736, 891, 1071
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BciT130I CCWGG 9 cut(s) 563, 657, 1086, 1159, 1164, 1210, 1287, 1413, 1479
BcnI CCSGG 2 cut(s) 1369, 1499
BcoDI GTCTC 1 cut(s) 1210
BcuI ACTAGT 1 cut(s) 326
BfaI CTAG 3 cut(s) 327, 1488, 1494
BfmI CTRYAG 2 cut(s) 528, 867
BglI GCCNNNNNGGC 1 cut(s) 532
BglII AGATCT 1 cut(s) 1453
BisI GCNGC 8 cut(s) 576, 609, 695, 725, 774, 912, 1514, 1532
BlsI GCNGC 8 cut(s) 577, 610, 696, 726, 775, 913, 1515, 1533
Bme18I GGWCC 2 cut(s) 587, 1482
BmgT120I GGNCC 4 cut(s) 587, 653, 872, 1482
BmiI GGNNCC 5 cut(s) 376, 560, 620, 1483, 1484
BmrI ACTGGG 2 cut(s) 276, 411
BmsI GCATC 1 cut(s) 241
BmuI ACTGGG 2 cut(s) 276, 411
BoxI GACNNNNGTC 1 cut(s) 478
BpiI GAAGAC 2 cut(s) 759, 1293
BplI GAGNNNNNCTC 2 cut(s) 550, 582
BpmI CTGGAG 1 cut(s) 1192
Bpu10I CCTNAGC 1 cut(s) 1131
BpuMI CCSGG 2 cut(s) 1369, 1499
BsaBI GATNNNNATC 1 cut(s) 882
BsaJI CCNNGG 8 cut(s) 159, 222, 462, 655, 656, 1085, 1367, 1478
BsaXI ACNNNNNCTCC 4 cut(s) 963, 993, 1190, 1220
Bsc4I CCNNNNNNNGG 4 cut(s) 402, 661, 1354, 1412
Bse1I ACTGG 2 cut(s) 271, 406
Bse3DI GCAATG 3 cut(s) 48, 1337, 1526
Bse8I GATNNNNATC 1 cut(s) 882
BseBI CCWGG 9 cut(s) 563, 657, 1086, 1159, 1164, 1210, 1287, 1413, 1479
BseDI CCNNGG 8 cut(s) 159, 222, 462, 655, 656, 1085, 1367, 1478
BseGI GGATG 9 cut(s) 19, 90, 457, 710, 883, 883, 1231, 1363, 1388
BseJI GATNNNNATC 1 cut(s) 882
BseLI CCNNNNNNNGG 4 cut(s) 402, 661, 1354, 1412
BseMI GCAATG 3 cut(s) 48, 1337, 1526
BseMII CTCAG 3 cut(s) 261, 1145, 1455
BseNI ACTGG 2 cut(s) 271, 406
BsePI GCGCGC 2 cut(s) 83, 229
BseRI GAGGAG 2 cut(s) 675, 1413
BseXI GCAGC 6 cut(s) 587, 595, 736, 760, 898, 1525
BsgI GTGCAG 1 cut(s) 594
Bsh1236I CGCG 2 cut(s) 85, 231
BshFI GGCC 6 cut(s) 217, 654, 694, 874, 1042, 1162
BsiSI CCGG 4 cut(s) 875, 1369, 1498, 1517
BslFI GGGAC 2 cut(s) 1120, 1468
BslI CCNNNNNNNGG 4 cut(s) 402, 661, 1354, 1412
BsmAI GTCTC 1 cut(s) 1210
BsmFI GGGAC 2 cut(s) 1120, 1468
BsmI GAATGC 1 cut(s) 43
BsnI GGCC 6 cut(s) 217, 654, 694, 874, 1042, 1162
BspACI CCGC 1 cut(s) 695
BspANI GGCC 6 cut(s) 217, 654, 694, 874, 1042, 1162
BspCNI CTCAG 3 cut(s) 260, 1144, 1454
BspFNI CGCG 2 cut(s) 85, 231
BspLI GGNNCC 5 cut(s) 376, 560, 620, 1483, 1484
BspMAI CTGCAG 1 cut(s) 871
BspPI GGATC 7 cut(s) 613, 626, 920, 939, 994, 1054, 1277
BsrDI GCAATG 3 cut(s) 48, 1337, 1526
BsrI ACTGG 2 cut(s) 271, 406
BssECI CCNNGG 8 cut(s) 159, 222, 462, 655, 656, 1085, 1367, 1478
BssHII GCGCGC 2 cut(s) 83, 229
BssNAI GTATAC 1 cut(s) 324
BssSI CACGAG 1 cut(s) 996
BssT1I CCWWGG 2 cut(s) 159, 222
Bst1107I GTATAC 1 cut(s) 324
Bst2BI CACGAG 1 cut(s) 996
Bst2UI CCWGG 9 cut(s) 563, 657, 1086, 1159, 1164, 1210, 1287, 1413, 1479
Bst4CI ACNGT 5 cut(s) 487, 906, 979, 1022, 1124
BstAPI GCANNNNNTGC 1 cut(s) 278
BstC8I GCNNGC 6 cut(s) 85, 102, 215, 231, 636, 1344
BstDEI CTNAG 3 cut(s) 247, 1131, 1441
BstENI CCTNNNNNAGG 1 cut(s) 1410
BstF5I GGATG 9 cut(s) 19, 90, 457, 710, 883, 883, 1231, 1363, 1388
BstFNI CGCG 2 cut(s) 85, 231
BstHHI GCGC 4 cut(s) 85, 87, 231, 233
BstMAI GTCTC 1 cut(s) 1210
BstMWI GCNNNNNNNGC 5 cut(s) 260, 269, 278, 532, 572
BstNI CCWGG 9 cut(s) 563, 657, 1086, 1159, 1164, 1210, 1287, 1413, 1479
BstNSI RCATGY 1 cut(s) 854
BstPAI GACNNNNGTC 1 cut(s) 478
BstSFI CTRYAG 2 cut(s) 528, 867
BstUI CGCG 2 cut(s) 85, 231
BstV1I GCAGC 6 cut(s) 587, 595, 736, 760, 898, 1525
BstV2I GAAGAC 2 cut(s) 759, 1293
BstX2I RGATCY 6 cut(s) 618, 925, 944, 1059, 1282, 1453
BstYI RGATCY 6 cut(s) 618, 925, 944, 1059, 1282, 1453
BstZ17I GTATAC 1 cut(s) 324
BsuRI GGCC 6 cut(s) 217, 654, 694, 874, 1042, 1162
BtsCI GGATG 9 cut(s) 19, 90, 457, 710, 883, 883, 1231, 1363, 1388
BtsIMutI CAGTG 2 cut(s) 902, 1329
Cac8I GCNNGC 6 cut(s) 85, 102, 215, 231, 636, 1344
CfoI GCGC 4 cut(s) 85, 87, 231, 233
Cfr13I GGNCC 4 cut(s) 587, 653, 872, 1482
Csp6I GTAC 2 cut(s) 49, 1290
CspCI CAANNNNNGTGG 2 cut(s) 726, 761
CviAII CATG 4 cut(s) 95, 379, 851, 1028
CviQI GTAC 2 cut(s) 49, 1290
DdeI CTNAG 3 cut(s) 247, 1131, 1441
Eco130I CCWWGG 2 cut(s) 159, 222
Eco147I AGGCCT 2 cut(s) 217, 1162
Eco47I GGWCC 2 cut(s) 587, 1482
Eco57I CTGAAG 5 cut(s) 218, 521, 810, 1156, 1299
EcoNI CCTNNNNNAGG 1 cut(s) 1410
EcoO109I RGGNCCY 1 cut(s) 1482
EcoRII CCWGG 9 cut(s) 561, 655, 1084, 1157, 1162, 1208, 1285, 1411, 1477
EcoT14I CCWWGG 2 cut(s) 159, 222
ErhI CCWWGG 2 cut(s) 159, 222
FaeI CATG 4 cut(s) 98, 382, 854, 1031
FaqI GGGAC 2 cut(s) 1120, 1468
FatI CATG 4 cut(s) 94, 378, 850, 1027
FauNDI CATATG 1 cut(s) 1111
FblI GTMKAC 2 cut(s) 178, 323
Fnu4HI GCNGC 8 cut(s) 576, 609, 695, 725, 774, 912, 1514, 1532
FokI GGATG 9 cut(s) 26, 77, 444, 697, 870, 890, 1218, 1350, 1375
Fsp4HI GCNGC 8 cut(s) 576, 609, 695, 725, 774, 912, 1514, 1532
FspBI CTAG 3 cut(s) 327, 1488, 1494
GlaI GCGC 4 cut(s) 84, 86, 230, 232
GluI GCNGC 8 cut(s) 576, 609, 695, 725, 774, 912, 1514, 1532
GsuI CTGGAG 1 cut(s) 1192
HaeIII GGCC 6 cut(s) 217, 654, 694, 874, 1042, 1162
HapII CCGG 4 cut(s) 875, 1369, 1498, 1517
HhaI GCGC 4 cut(s) 85, 87, 231, 233
Hin1II CATG 4 cut(s) 98, 382, 854, 1031
Hin6I GCGC 4 cut(s) 83, 85, 229, 231
HinP1I GCGC 4 cut(s) 83, 85, 229, 231
HincII GTYRAC 2 cut(s) 483, 492
HindII GTYRAC 2 cut(s) 483, 492
HpaII CCGG 4 cut(s) 875, 1369, 1498, 1517
HphI GGTGA 4 cut(s) 680, 726, 1102, 1467
Hpy166II GTNNAC 5 cut(s) 179, 305, 324, 483, 492
Hpy188III TCNNGA 3 cut(s) 306, 506, 1073
Hpy8I GTNNAC 5 cut(s) 179, 305, 324, 483, 492
HpyAV CCTTC 5 cut(s) 165, 228, 834, 867, 977
HpyCH4III ACNGT 5 cut(s) 487, 906, 979, 1022, 1124
HpyCH4IV ACGT 1 cut(s) 1461
HpyF10VI GCNNNNNNNGC 5 cut(s) 260, 269, 278, 532, 572
HpyF3I CTNAG 3 cut(s) 247, 1131, 1441
HpySE526I ACGT 1 cut(s) 1461
Hsp92II CATG 4 cut(s) 98, 382, 854, 1031
HspAI GCGC 4 cut(s) 83, 85, 229, 231
KflI GGGWCCC 1 cut(s) 1482
LmnI GCTCC 4 cut(s) 92, 226, 558, 688
Lsp1109I GCAGC 6 cut(s) 587, 595, 736, 760, 898, 1525
LweI GCATC 1 cut(s) 241
MaeI CTAG 3 cut(s) 327, 1488, 1494
MaeII ACGT 1 cut(s) 1461
MaeIII GTNAC 3 cut(s) 592, 1153, 1473
MboII GAAGA 6 cut(s) 211, 723, 759, 1274, 1292, 1293
MfeI CAATTG 1 cut(s) 1190
MflI RGATCY 6 cut(s) 618, 925, 944, 1059, 1282, 1453
MlyI GAGTC 5 cut(s) 488, 1078, 1222, 1343, 1433
MseI TTAA 8 cut(s) 26, 368, 645, 932, 1008, 1118, 1253, 1401
MspA1I CMGCKG 1 cut(s) 697
MspI CCGG 4 cut(s) 875, 1369, 1498, 1517
MunI CAATTG 1 cut(s) 1190
Mva1269I GAATGC 1 cut(s) 43
MvaI CCWGG 9 cut(s) 563, 657, 1086, 1159, 1164, 1210, 1287, 1413, 1479
MvnI CGCG 2 cut(s) 85, 231
MwoI GCNNNNNNNGC 5 cut(s) 260, 269, 278, 532, 572
NciI CCSGG 2 cut(s) 1369, 1499
NdeI CATATG 1 cut(s) 1111
NlaIII CATG 4 cut(s) 98, 382, 854, 1031
NlaIV GGNNCC 5 cut(s) 376, 560, 620, 1483, 1484
NmeAIII GCCGAG 1 cut(s) 443
NmuCI GTSAC 2 cut(s) 1153, 1473
NspI RCATGY 1 cut(s) 854
PasI CCCWGGG 1 cut(s) 656
PauI GCGCGC 2 cut(s) 83, 229
PceI AGGCCT 2 cut(s) 217, 1162
PctI GAATGC 1 cut(s) 43
PfeI GAWTC 5 cut(s) 580, 953, 1035, 1416, 1505
PflFI GACNNNGTC 1 cut(s) 1202
PfoI TCCNGGA 2 cut(s) 1208, 1411
PkrI GCNGC 8 cut(s) 577, 610, 696, 726, 775, 913, 1515, 1533
PleI GAGTC 5 cut(s) 487, 1077, 1222, 1342, 1433
PpsI GAGTC 5 cut(s) 487, 1077, 1222, 1342, 1433
PpuMI RGGWCCY 1 cut(s) 1482
PshAI GACNNNNGTC 1 cut(s) 478
PshBI ATTAAT 1 cut(s) 1008
Psp5II RGGWCCY 1 cut(s) 1482
Psp6I CCWGG 9 cut(s) 561, 655, 1084, 1157, 1162, 1208, 1285, 1411, 1477
PspGI CCWGG 9 cut(s) 561, 655, 1084, 1157, 1162, 1208, 1285, 1411, 1477
PspN4I GGNNCC 5 cut(s) 376, 560, 620, 1483, 1484
PspPI GGNCC 4 cut(s) 587, 653, 872, 1482
PspPPI RGGWCCY 1 cut(s) 1482
PstI CTGCAG 1 cut(s) 871
PsuI RGATCY 6 cut(s) 618, 925, 944, 1059, 1282, 1453
PsyI GACNNNGTC 1 cut(s) 1202
PteI GCGCGC 2 cut(s) 83, 229
RsaI GTAC 2 cut(s) 50, 1291
RsaNI GTAC 2 cut(s) 49, 1290
SaqAI TTAA 8 cut(s) 26, 368, 645, 932, 1008, 1118, 1253, 1401
SatI GCNGC 8 cut(s) 576, 609, 695, 725, 774, 912, 1514, 1532
Sau96I GGNCC 4 cut(s) 587, 653, 872, 1482
SchI GAGTC 5 cut(s) 488, 1078, 1222, 1343, 1433
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 2 cut(s) 528, 867
SinI GGWCC 2 cut(s) 587, 1482
SpeI ACTAGT 1 cut(s) 326
SseBI AGGCCT 2 cut(s) 217, 1162
SsiI CCGC 1 cut(s) 695
SspMI CTAG 3 cut(s) 327, 1488, 1494
StuI AGGCCT 2 cut(s) 217, 1162
StyI CCWWGG 2 cut(s) 159, 222
TaaI ACNGT 5 cut(s) 487, 906, 979, 1022, 1124
TaiI ACGT 1 cut(s) 1464
TaqI TCGA 4 cut(s) 35, 76, 505, 568
TatI WGTACW 1 cut(s) 48
TauI GCSGC 1 cut(s) 697
TfiI GAWTC 5 cut(s) 580, 953, 1035, 1416, 1505
Tru1I TTAA 8 cut(s) 26, 368, 645, 932, 1008, 1118, 1253, 1401
Tru9I TTAA 8 cut(s) 26, 368, 645, 932, 1008, 1118, 1253, 1401
TscAI CASTG 2 cut(s) 909, 1329
TseFI GTSAC 2 cut(s) 1153, 1473
TseI GCWGC 7 cut(s) 575, 608, 724, 773, 911, 1513, 1531
Tsp45I GTSAC 2 cut(s) 1153, 1473
TspDTI ATGAA 4 cut(s) 162, 1031, 1299, 1352
TspRI CASTG 2 cut(s) 909, 1329
Tth111I GACNNNGTC 1 cut(s) 1202
VpaK11BI GGWCC 2 cut(s) 587, 1482
VspI ATTAAT 1 cut(s) 1008
XagI CCTNNNNNAGG 1 cut(s) 1410
XapI RAATTY 4 cut(s) 121, 347, 1255, 1318
XceI RCATGY 1 cut(s) 854
XmiI GTMKAC 2 cut(s) 178, 323
XspI CTAG 3 cut(s) 327, 1488, 1494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.