Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8368811.1

Orthogroup ID

OG0013612

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 916

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8368811.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

gatgacattttcttaatttgctcgaatgcaatgcagtacaatgccccagatactatatattttcgacaggcgcgctccatccatgagcttgcgaaaaagaactttgaaaatttgaggcaagatagtgatgataatgaaccagaacccaaggtcgtaagaaggggtagaccaccaaccaaaaatctgaagaaaccacttggcaggccttccttggagcgcgctggttcagagttctcagatgccactctcgctactggggcagaaaatgccatattgtccaattatgatcgttcacgaagtaatgatgtgtatactagttggttggctgataacaaatttgagaggaatgatgacttaacaggttccatgttgagaggtaattccaagactgggagaaagcagtttgtatttgatgagaacaagcgtaatacatatctacactctcatccctcggctaatggacgagagtcaaccgtgttgactacatttgatcgagaaagaaaacagctaatgcctgtatgtatattactgtctttcagttctctaagatttatgtttgtaggtatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0002576 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032940 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0046903 GO:0051179 GO:0051234 GO:0051276 GO:0070013 GO:0070775 GO:0070776 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

189

Amino Acids

21.66

Weight (kDa)

9.12

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013612)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16690
malus_domestica	MD05G1135100.v1.1 MD10G1140600.v1.1
prunus_persica	Prupe.8G179000_v2.0.a1
pyrus_communis	pycom05g13170 pycom10g11920
rosa_chinensis	RchiOBHm_Chr6g0280831
rosa_laevigata	RLG00000013027
rosa_multiflora	Rmu_co8368811.1_g000001 Rmu_sc0003153.1_g000023 Rmu_sc0038972.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187590
rosa_rugosa	Rorug06G0134800
rosa_samantha	Rh6AG248200 Rh6BG249700 Rh6CG250900 Rh6DG242500
rosa_wichuraiana	Rw6G021450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	166, 311
AccII	CGCG	2 cut(s)	73, 219
AcsI	RAATTY	2 cut(s)	109, 335
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	390
AgsI	TTSAA	1 cut(s)	107
AhlI	ACTAGT	1 cut(s)	314
AluBI	AGCT	2 cut(s)	88, 508
AluI	AGCT	2 cut(s)	88, 508
AoxI	GGCC	1 cut(s)	203
ApoI	RAATTY	2 cut(s)	109, 335
AspLEI	GCGC	4 cut(s)	73, 75, 219, 221
BccI	CCATC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BcuI	ACTAGT	1 cut(s)	314
BfaI	CTAG	1 cut(s)	315
BmiI	GGNNCC	1 cut(s)	364
BmrI	ACTGGG	2 cut(s)	264, 399
BmsI	GCATC	1 cut(s)	229
BmuI	ACTGGG	2 cut(s)	264, 399
BoxI	GACNNNNGTC	1 cut(s)	466
BsaJI	CCNNGG	3 cut(s)	147, 210, 450
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse1I	ACTGG	2 cut(s)	259, 394
Bse3DI	GCAATG	1 cut(s)	36
BseDI	CCNNGG	3 cut(s)	147, 210, 450
BseGI	GGATG	2 cut(s)	78, 445
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	259, 394
BsePI	GCGCGC	2 cut(s)	71, 217
Bsh1236I	CGCG	2 cut(s)	73, 219
BshFI	GGCC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	390
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	286, 490
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	1 cut(s)	248
BspFNI	CGCG	2 cut(s)	73, 219
BspLI	GGNNCC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	2 cut(s)	259, 394
BssECI	CCNNGG	3 cut(s)	147, 210, 450
BssHII	GCGCGC	2 cut(s)	71, 217
BssMI	GATC	2 cut(s)	286, 490
BssNAI	GTATAC	1 cut(s)	312
BssT1I	CCWWGG	2 cut(s)	147, 210
Bst1107I	GTATAC	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	475, 531
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	4 cut(s)	73, 90, 203, 219
BstDEI	CTNAG	2 cut(s)	235, 545
BstF5I	GGATG	2 cut(s)	78, 445
BstFNI	CGCG	2 cut(s)	73, 219
BstHHI	GCGC	4 cut(s)	73, 75, 219, 221
BstKTI	GATC	2 cut(s)	289, 493
BstMBI	GATC	2 cut(s)	286, 490
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 257, 266
BstPAI	GACNNNNGTC	1 cut(s)	466
BstUI	CGCG	2 cut(s)	73, 219
BstZ17I	GTATAC	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	78, 445
Cac8I	GCNNGC	4 cut(s)	73, 90, 203, 219
CfoI	GCGC	4 cut(s)	73, 75, 219, 221
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	2 cut(s)	83, 367
CviJI	RGCY	5 cut(s)	88, 205, 326, 455, 508
CviKI_1	RGCY	5 cut(s)	88, 205, 326, 455, 508
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	2 cut(s)	235, 545
DpnI	GATC	2 cut(s)	288, 492
DpnII	GATC	2 cut(s)	286, 490
Eco130I	CCWWGG	2 cut(s)	147, 210
Eco147I	AGGCCT	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	206
EcoT14I	CCWWGG	2 cut(s)	147, 210
ErhI	CCWWGG	2 cut(s)	147, 210
FaeI	CATG	2 cut(s)	86, 370
FatI	CATG	2 cut(s)	82, 366
FblI	GTMKAC	2 cut(s)	166, 311
FokI	GGATG	2 cut(s)	65, 432
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	4 cut(s)	72, 74, 218, 220
HaeIII	GGCC	1 cut(s)	205
HhaI	GCGC	4 cut(s)	73, 75, 219, 221
Hin1II	CATG	2 cut(s)	86, 370
Hin6I	GCGC	4 cut(s)	71, 73, 217, 219
HinP1I	GCGC	4 cut(s)	71, 73, 217, 219
HincII	GTYRAC	2 cut(s)	471, 480
HindII	GTYRAC	2 cut(s)	471, 480
HinfI	GANTC	1 cut(s)	467
Hpy166II	GTNNAC	5 cut(s)	167, 293, 312, 471, 480
Hpy188I	TCNGA	3 cut(s)	186, 229, 238
Hpy188III	TCNNGA	2 cut(s)	294, 494
Hpy8I	GTNNAC	5 cut(s)	167, 293, 312, 471, 480
HpyAV	CCTTC	2 cut(s)	153, 216
HpyCH4III	ACNGT	2 cut(s)	475, 531
HpyCH4V	TGCA	2 cut(s)	29, 34
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 257, 266
HpyF3I	CTNAG	2 cut(s)	235, 545
Hsp92II	CATG	2 cut(s)	86, 370
HspAI	GCGC	4 cut(s)	71, 73, 217, 219
Kzo9I	GATC	2 cut(s)	286, 490
LmnI	GCTCC	2 cut(s)	80, 214
LpnPI	CCDG	9 cut(s)	53, 60, 153, 187, 207, 240, 345, 375, 528
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	315
MalI	GATC	2 cut(s)	288, 492
MboI	GATC	2 cut(s)	286, 490
MboII	GAAGA	1 cut(s)	199
MluCI	AATT	5 cut(s)	15, 109, 280, 335, 379
MlyI	GAGTC	1 cut(s)	476
MnlI	CCTC	4 cut(s)	108, 336, 368, 460
MseI	TTAA	2 cut(s)	14, 356
Mva1269I	GAATGC	1 cut(s)	31
MvnI	CGCG	2 cut(s)	73, 219
MwoI	GCNNNNNNNGC	3 cut(s)	248, 257, 266
NdeII	GATC	2 cut(s)	286, 490
NlaIII	CATG	2 cut(s)	86, 370
NlaIV	GGNNCC	1 cut(s)	364
NmeAIII	GCCGAG	1 cut(s)	431
PauI	GCGCGC	2 cut(s)	71, 217
PceI	AGGCCT	1 cut(s)	205
PctI	GAATGC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PshAI	GACNNNNGTC	1 cut(s)	466
PspN4I	GGNNCC	1 cut(s)	364
PteI	GCGCGC	2 cut(s)	71, 217
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	14, 356
Sau3AI	GATC	2 cut(s)	286, 490
SchI	GAGTC	1 cut(s)	476
SetI	ASST	6 cut(s)	90, 153, 364, 379, 510, 565
SfaNI	GCATC	1 cut(s)	229
SpeI	ACTAGT	1 cut(s)	314
Sse9I	AATT	5 cut(s)	15, 109, 280, 335, 379
SseBI	AGGCCT	1 cut(s)	205
SspMI	CTAG	1 cut(s)	315
StuI	AGGCCT	1 cut(s)	205
StyI	CCWWGG	2 cut(s)	147, 210
TaaI	ACNGT	2 cut(s)	475, 531
TaqI	TCGA	3 cut(s)	23, 64, 493
TasI	AATT	5 cut(s)	15, 109, 280, 335, 379
TatI	WGTACW	1 cut(s)	36
Tru1I	TTAA	2 cut(s)	14, 356
Tru9I	TTAA	2 cut(s)	14, 356
TspDTI	ATGAA	1 cut(s)	150
XapI	RAATTY	2 cut(s)	109, 335
XmiI	GTMKAC	2 cut(s)	166, 311
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.