Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013612

Physical Location & Seq

Genomic Coordinates Forward (+)

19089518 .. 19092046

Gene Structure 2529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0134800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGCACATGCTGTTAATTTGTTCACCAACTTGGGGTTTGTTGATTGTAGGTGGCCAAGAGTCTTTGAAGAAGTGTGCTAAAGGTAGCACAAAGAGAAAGGCCACTCATAGTGCGGCCACTGAGGCGGCCAAAGATGGTGCCACCATGTCTTCAACGTCTCAATCTCCTCCAGTGAAACAATCGGCAAAACAAGACGAGCAATCTTCTGAGAGTGAAGAACAATTGTGCGTGGCCAAACGAAGTTGCCTAGAGACATTCAAGAAGGCCATCGTCCAAAATGCCATTCCAAGTGAAACAGAGGAATCCGTGGAACTAACCACTGATAAAGATGGTCAACCAAGTAGTGACGAACCTGTGGGGGAGATAATGTCTTCTGAAAGAATGGCCGAAAGCGAAGTTGTGGCAATGAATATTTCAGAGACATTTGTGCTCACCCAAACGTCAACGCAAGCCAGTATTCCCTCATCGTCATTGAGTGAGCAACACCTGGTGTTGGCTAACGAACTAGAAGGTAATCAAGGGTTTGAAGCCGAACTTCAGGCTTTCATGAGGGCATTTTCGGCCGATGCTCTAATCCAACCAGAATGCTGCTCGGCCATTTCGCAGTTACCAATCGCTCAATTGACATCAAGGGAGGAAATTGATGGGGCTCTGAAGGTGGTAAAGGAAACGTTAGCACAGTCATTAAAAGAATTTGTGGAAACAGGCCAACTATCAAAAGTGAAAGTGGCCATGGATTTGTTACTTGGAGCCAAATACTTTGCCCCTCCCAATGTAGCTCTCATTGGTGAGAAGCTAGAAGTGTTGACCCAACAAATATCCCGTGTAGCTGGTTCATACCAAGAAATAGAAAAAAGGAGACAACAAATCTTGGCTTGTGAGCAAATGAAGAAAGCCTTGGTTCCTGAGTTTGGGTGGTGTATGGAACAAAAACGGGTTGTGGAGTCTCTTGAAGGCAAGATAAATGAGTTGGAAAGACAATTGGCGTCCTTGAAACAAGAGAGACAAGAAGTGGGGGAAAAGCTCCTTCAAAGGAGTAAGCAGTGTTTCCAAAGCCAAGGACAACTGAAGAAAATAGAGGCCGAATTGAAAAATTCCGAGCCTAGGTGTATGCAACTTGAGAGTGACCTTCAGGACACTAGTTGTACCTTGGGAGCTCTTAAAGCCTTATTAGCCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0002576 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032940 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0046903 GO:0051179 GO:0051234 GO:0051276 GO:0070013 GO:0070775 GO:0070776 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

393

Amino Acids

43.09

Weight (kDa)

5.07

Isoelectric Point (pI)

68.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013612)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16690
malus_domestica	MD05G1135100.v1.1 MD10G1140600.v1.1
prunus_persica	Prupe.8G179000_v2.0.a1
pyrus_communis	pycom05g13170 pycom10g11920
rosa_chinensis	RchiOBHm_Chr6g0280831
rosa_laevigata	RLG00000013027
rosa_multiflora	Rmu_co8368811.1_g000001 Rmu_sc0003153.1_g000023 Rmu_sc0038972.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187590
rosa_rugosa	Rorug06G0134800
rosa_samantha	Rh6AG248200 Rh6BG249700 Rh6CG250900 Rh6DG242500
rosa_wichuraiana	Rw6G021450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AciI	CCGC	2 cut(s)	113, 125
AclI	AACGTT	1 cut(s)	671
AcoI	YGGCCR	8 cut(s)	52, 114, 126, 231, 384, 561, 594, 729
AcsI	RAATTY	2 cut(s)	692, 1093
AcuI	CTGAAG	4 cut(s)	521, 674, 1088, 1115
AcyI	GRCGYC	1 cut(s)	986
AdeI	CACNNNGTG	1 cut(s)	490
AfaI	GTAC	1 cut(s)	1147
AfiI	CCNNNNNNNGG	4 cut(s)	32, 493, 911, 1104
AgsI	TTSAA	8 cut(s)	67, 153, 259, 527, 953, 994, 1031, 1090
AhlI	ACTAGT	1 cut(s)	1139
AjnI	CCWGG	1 cut(s)	486
AjuI	GAANNNNNNNTTGG	4 cut(s)	267, 299, 881, 913
AluBI	AGCT	5 cut(s)	779, 796, 830, 1024, 1157
AluI	AGCT	5 cut(s)	779, 796, 830, 1024, 1157
Alw21I	GWGCWC	2 cut(s)	432, 1159
Alw26I	GTCTC	6 cut(s)	162, 245, 413, 853, 951, 997
ApeKI	GCWGC	1 cut(s)	588
ApoI	RAATTY	2 cut(s)	692, 1093
AspA2I	CCTAGG	1 cut(s)	1103
AsuHPI	GGTGA	3 cut(s)	15, 424, 800
AvrII	CCTAGG	1 cut(s)	1103
BalI	TGGCCA	3 cut(s)	54, 233, 731
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	2 cut(s)	652, 1159
BbsI	GAAGAC	2 cut(s)	141, 363
Bbv12I	GWGCWC	2 cut(s)	432, 1159
BbvI	GCAGC	1 cut(s)	575
BccI	CCATC	4 cut(s)	128, 275, 323, 638
BciT130I	CCWGG	1 cut(s)	488
BcoDI	GTCTC	6 cut(s)	162, 245, 413, 853, 951, 997
BcuI	ACTAGT	1 cut(s)	1139
BfaI	CTAG	5 cut(s)	248, 506, 797, 1104, 1140
BglI	GCCNNNNNGGC	1 cut(s)	122
BisI	GCNGC	3 cut(s)	114, 126, 589
BlnI	CCTAGG	1 cut(s)	1103
BlsI	GCNGC	3 cut(s)	115, 127, 590
Bme1390I	CCNGG	1 cut(s)	488
BmiI	GGNNCC	3 cut(s)	139, 751, 903
BmrFI	CCNGG	1 cut(s)	488
BmsI	GCATC	1 cut(s)	556
BpiI	GAAGAC	2 cut(s)	141, 363
BpmI	CTGGAG	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	1139
BsaHI	GRCGYC	1 cut(s)	986
BsaJI	CCNNGG	6 cut(s)	306, 732, 897, 1057, 1103, 1149
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 493, 911, 1104
Bse1I	ACTGG	2 cut(s)	170, 453
Bse3DI	GCAATG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	488
BseDI	CCNNGG	6 cut(s)	306, 732, 897, 1057, 1103, 1149
BseLI	CCNNNNNNNGG	4 cut(s)	32, 493, 911, 1104
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	3 cut(s)	111, 198, 897
BseNI	ACTGG	2 cut(s)	170, 453
BseRI	GAGGAG	1 cut(s)	156
BseX3I	CGGCCG	1 cut(s)	561
BseXI	GCAGC	1 cut(s)	575
Bsh1285I	CGRYCG	1 cut(s)	564
BshNI	GGYRCC	1 cut(s)	137
BsiEI	CGRYCG	1 cut(s)	564
BsiHKAI	GWGCWC	2 cut(s)	432, 1159
BslI	CCNNNNNNNGG	4 cut(s)	32, 493, 911, 1104
BsmAI	GTCTC	6 cut(s)	162, 245, 413, 853, 951, 997
BsmBI	CGTCTC	1 cut(s)	162
BsmI	GAATGC	1 cut(s)	590
Bsp1286I	GDGCHC	3 cut(s)	432, 652, 1159
Bsp19I	CCATGG	1 cut(s)	732
BspACI	CCGC	2 cut(s)	113, 125
BspCNI	CTCAG	3 cut(s)	112, 199, 898
BspHI	TCATGA	1 cut(s)	546
BspLI	GGNNCC	3 cut(s)	139, 751, 903
BspT107I	GGYRCC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	170, 453
BssECI	CCNNGG	6 cut(s)	306, 732, 897, 1057, 1103, 1149
BssNI	GRCGYC	1 cut(s)	986
BssT1I	CCWWGG	5 cut(s)	732, 897, 1057, 1103, 1149
Bst2UI	CCWGG	1 cut(s)	488
Bst4CI	ACNGT	1 cut(s)	681
BstACI	GRCGYC	1 cut(s)	986
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	3 cut(s)	120, 207, 906
BstDSI	CCRYGG	2 cut(s)	306, 732
BstMAI	GTCTC	6 cut(s)	162, 245, 413, 853, 951, 997
BstMCI	CGRYCG	1 cut(s)	564
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 560, 1163, 1172
BstNI	CCWGG	1 cut(s)	488
BstNSI	RCATGY	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	575
BstV2I	GAAGAC	2 cut(s)	141, 363
BstZI	CGGCCG	1 cut(s)	561
BtgI	CCRYGG	2 cut(s)	306, 732
BtsI	GCAGTG	1 cut(s)	1049
BtsIMutI	CAGTG	4 cut(s)	117, 177, 318, 1049
Cac8I	GCNNGC	1 cut(s)	450
CciI	TCATGA	1 cut(s)	546
CseI	GACGC	1 cut(s)	975
CsiI	ACCWGGT	1 cut(s)	486
Csp6I	GTAC	1 cut(s)	1146
CviAII	CATG	4 cut(s)	7, 145, 547, 733
CviQI	GTAC	1 cut(s)	1146
DdeI	CTNAG	3 cut(s)	120, 207, 906
DraIII	CACNNNGTG	1 cut(s)	490
EaeI	YGGCCR	8 cut(s)	52, 114, 126, 231, 384, 561, 594, 729
EagI	CGGCCG	1 cut(s)	561
Ecl136II	GAGCTC	1 cut(s)	1157
EclXI	CGGCCG	1 cut(s)	561
Eco130I	CCWWGG	5 cut(s)	732, 897, 1057, 1103, 1149
Eco24I	GRGCYC	2 cut(s)	652, 1159
Eco52I	CGGCCG	1 cut(s)	561
Eco53kI	GAGCTC	1 cut(s)	1157
Eco57I	CTGAAG	4 cut(s)	521, 674, 1088, 1115
EcoICRI	GAGCTC	1 cut(s)	1157
EcoRII	CCWGG	1 cut(s)	486
EcoT14I	CCWWGG	5 cut(s)	732, 897, 1057, 1103, 1149
EcoT38I	GRGCYC	2 cut(s)	652, 1159
ErhI	CCWWGG	5 cut(s)	732, 897, 1057, 1103, 1149
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	4 cut(s)	10, 148, 550, 736
FaiI	YATR	8 cut(s)	8, 108, 146, 548, 734, 838, 923, 1112
FalI	AAGNNNNNCTT	4 cut(s)	519, 551, 881, 913
FatI	CATG	4 cut(s)	6, 144, 546, 732
Fnu4HI	GCNGC	3 cut(s)	114, 126, 589
FriOI	GRGCYC	2 cut(s)	652, 1159
Fsp4HI	GCNGC	3 cut(s)	114, 126, 589
FspBI	CTAG	5 cut(s)	248, 506, 797, 1104, 1140
GluI	GCNGC	3 cut(s)	114, 126, 589
GsuI	CTGGAG	1 cut(s)	153
HgaI	GACGC	1 cut(s)	975
Hin1I	GRCGYC	1 cut(s)	986
Hin1II	CATG	4 cut(s)	10, 148, 550, 736
HincII	GTYRAC	3 cut(s)	335, 444, 807
HindII	GTYRAC	3 cut(s)	335, 444, 807
HinfI	GANTC	3 cut(s)	59, 302, 944
HphI	GGTGA	3 cut(s)	15, 424, 800
Hpy166II	GTNNAC	4 cut(s)	23, 335, 444, 807
Hpy188I	TCNGA	5 cut(s)	208, 376, 418, 654, 1099
Hpy188III	TCNNGA	5 cut(s)	259, 547, 905, 950, 1133
Hpy8I	GTNNAC	4 cut(s)	23, 335, 444, 807
HpyAV	CCTTC	6 cut(s)	256, 503, 649, 947, 1037, 1139
HpyCH4III	ACNGT	1 cut(s)	681
HpyCH4IV	ACGT	3 cut(s)	155, 440, 671
HpyCH4V	TGCA	2 cut(s)	4, 1114
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 560, 1163, 1172
HpyF3I	CTNAG	3 cut(s)	120, 207, 906
HpySE526I	ACGT	3 cut(s)	155, 440, 671
Hsp92I	GRCGYC	1 cut(s)	986
Hsp92II	CATG	4 cut(s)	10, 148, 550, 736
LmnI	GCTCC	3 cut(s)	749, 1029, 1154
Lsp1109I	GCAGC	1 cut(s)	575
LweI	GCATC	1 cut(s)	556
MabI	ACCWGGT	1 cut(s)	486
MaeI	CTAG	5 cut(s)	248, 506, 797, 1104, 1140
MaeII	ACGT	3 cut(s)	155, 440, 671
MaeIII	GTNAC	4 cut(s)	344, 606, 741, 1124
MboII	GAAGA	7 cut(s)	79, 141, 195, 227, 363, 901, 1081
MfeI	CAATTG	3 cut(s)	221, 620, 980
MhlI	GDGCHC	3 cut(s)	432, 652, 1159
MlsI	TGGCCA	3 cut(s)	54, 233, 731
MluCI	AATT	8 cut(s)	15, 221, 620, 639, 692, 980, 1085, 1093
MluNI	TGGCCA	3 cut(s)	54, 233, 731
MlyI	GAGTC	2 cut(s)	68, 953
MmeI	TCCRAC	2 cut(s)	601, 951
MnlI	CCTC	8 cut(s)	115, 177, 292, 472, 543, 628, 777, 1072
Mox20I	TGGCCA	3 cut(s)	54, 233, 731
MscI	TGGCCA	3 cut(s)	54, 233, 731
MseI	TTAA	3 cut(s)	14, 686, 1161
Msp20I	TGGCCA	3 cut(s)	54, 233, 731
MspR9I	CCNGG	1 cut(s)	488
MunI	CAATTG	3 cut(s)	221, 620, 980
Mva1269I	GAATGC	1 cut(s)	590
MvaI	CCWGG	1 cut(s)	488
MwoI	GCNNNNNNNGC	4 cut(s)	122, 560, 1163, 1172
NcoI	CCATGG	1 cut(s)	732
NlaIII	CATG	4 cut(s)	10, 148, 550, 736
NlaIV	GGNNCC	3 cut(s)	139, 751, 903
NmeAIII	GCCGAG	1 cut(s)	572
NmuCI	GTSAC	2 cut(s)	344, 1124
NspI	RCATGY	1 cut(s)	10
PagI	TCATGA	1 cut(s)	546
PctI	GAATGC	1 cut(s)	590
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	115, 127, 590
PleI	GAGTC	2 cut(s)	67, 952
PpsI	GAGTC	2 cut(s)	67, 952
Psp124BI	GAGCTC	1 cut(s)	1159
Psp1406I	AACGTT	1 cut(s)	671
Psp6I	CCWGG	1 cut(s)	486
PspGI	CCWGG	1 cut(s)	486
PspN4I	GGNNCC	3 cut(s)	139, 751, 903
RsaI	GTAC	1 cut(s)	1147
RsaNI	GTAC	1 cut(s)	1146
SacI	GAGCTC	1 cut(s)	1159
SaqAI	TTAA	3 cut(s)	14, 686, 1161
SatI	GCNGC	3 cut(s)	114, 126, 589
SchI	GAGTC	2 cut(s)	68, 953
ScrFI	CCNGG	1 cut(s)	488
SduI	GDGCHC	3 cut(s)	432, 652, 1159
SexAI	ACCWGGT	1 cut(s)	486
SfaNI	GCATC	1 cut(s)	556
SmlI	CTYRAG	1 cut(s)	1118
SmoI	CTYRAG	1 cut(s)	1118
SpeI	ACTAGT	1 cut(s)	1139
Sse9I	AATT	8 cut(s)	15, 221, 620, 639, 692, 980, 1085, 1093
SsiI	CCGC	2 cut(s)	113, 125
SspI	AATATT	1 cut(s)	412
SspMI	CTAG	5 cut(s)	248, 506, 797, 1104, 1140
SstI	GAGCTC	1 cut(s)	1159
StyD4I	CCNGG	1 cut(s)	486
StyI	CCWWGG	5 cut(s)	732, 897, 1057, 1103, 1149
TaaI	ACNGT	1 cut(s)	681
TaiI	ACGT	3 cut(s)	158, 443, 674
TasI	AATT	8 cut(s)	15, 221, 620, 639, 692, 980, 1085, 1093
TauI	GCSGC	2 cut(s)	116, 128
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	3 cut(s)	14, 686, 1161
Tru9I	TTAA	3 cut(s)	14, 686, 1161
TscAI	CASTG	4 cut(s)	124, 177, 325, 1049
TseFI	GTSAC	2 cut(s)	344, 1124
TseI	GCWGC	1 cut(s)	588
Tsp45I	GTSAC	2 cut(s)	344, 1124
TspDTI	ATGAA	4 cut(s)	422, 535, 825, 902
TspGWI	ACGGA	1 cut(s)	295
TspRI	CASTG	4 cut(s)	124, 177, 325, 1049
XapI	RAATTY	2 cut(s)	692, 1093
XceI	RCATGY	1 cut(s)	10
XmaJI	CCTAGG	1 cut(s)	1103
XspI	CTAG	5 cut(s)	248, 506, 797, 1104, 1140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.