Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0014660

Physical Location & Seq

Genomic Coordinates Forward (+)

15793471 .. 15797027

Gene Structure 3557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGCATATCAAAGCCTCCTTAGATACATTGTCCTCCAATGGCTGTGGGGATCTGAAAACCACCAAAATTGACACAAAGAAAACCAAACAGAGCGTAGCAATGGAGTACAGGAAGCTCAAAGATCAGGATCAAGATGAATCTTCAGCCCCCCAAGACCTCGAAAGCTTGCGGGTCAAGCCAGTGGATCTCACCAAGTGGAAGCTCAAGTCGGCTGTTACGATAGCTCTGACCGTTTTCACGAGTTCACAAGCAATATTGATTGTGTGGTCGAAGCGGGCTGGCAAGTATGAATACAGTGTCACCACTGCAAATTTCTCGGTGGAGGCTTTGAAGTGTGCAATATCGCTTGCTGCTTTGGCACGAATCTGGAGCAATGAAGGTGTTACTGAAGATAACAGGTTGAGTGCAAAGCTGGATGAAGTTATTGTATACCCCATTCCGGCATTTCTTTACCTAATCAAGAATTTGCTTCAGTATTATATCTTTGCGTACGTGGATGCTCCGGGTTATCAAATACTGAAGAACTTCAACATTATCAGTACTGGAATTTTATACAGAATCATACTCAAGAGAAAGTTAAGTGAGATTCAATGGGCCGCTTTCATTATACTATGTGCAGGGTGCACTACTGCACAACTGAACCCAAAATCTGACAGTGTTCTCCAAACTCCATTCCAAGGCTGGGTGATGGCCATTGTGATGGCACTTTTAAGTGGTTTTGCTGGAGTATACACCGAGGCCATAATGAAAAAGCGTCCTGCAAGGAATATAAATGTGCAGAACTTCTGGATGTACGTGTTTGGCATGGCCTTCAATGCTGTTGCTATACTGGTTCAAGATTTTGATGCAGTGATGAACAAGGGATTCTTCCACGGATACTCTTTTATTACAGTTCTCATGATTTTCAACCACGCACTCAGGTCGATTATTGGTATTGCTGTGTCTATGGTTATGAAGTATGCTGATAATATTGTGAAGGTGTATTCTACTTCAGTGGCAATGCTTCTTACAGCAGTTGTTTCTGTGTTTCTATTTGGCTTTCATCTATCCCTCGCCTTTTTCCTTGGCTCGACCGTTGTCTCGGTTGCGGTTTATCTACATTCAATTGGGAAGGTTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015136 GO:0015318 GO:0015711 GO:0015739 GO:0015849 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuc_sug_transp

Protein Analysis

374

Amino Acids

41.56

Weight (kDa)

9.43

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	66 - 367	3.5e-53	Nucleotide-sugar transporter
UAA	PF08449	117 - 368	6e-11	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16930 FvH4_2g16930
malus_domestica	MD05G1140500.v1.1 MD05G1141000.v1.1 MD11G1242300.v1.1
prunus_persica	Prupe.8G181000_v2.0.a1
pyrus_communis	pycom05g13640 pycom10g12230
rosa_chinensis	RchiOBHm_Chr6g0281071
rosa_laevigata	RLG00000012999
rosa_multiflora	Rmu_sc0001705.1_g000004
rosa_roxburghii	Rroxscaffold_7G00187330
rosa_rugosa	Rorug06G0138800
rosa_samantha	Rh6BG253600 Rh6CG253500 Rh6DG245100
rosa_wichuraiana	Rw6G021760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	429, 729
AciI	CCGC	4 cut(s)	169, 274, 597, 1088
AclWI	GGATC	3 cut(s)	57, 135, 192
AcoI	YGGCCR	1 cut(s)	690
AcsI	RAATTY	3 cut(s)	310, 463, 546
AcuI	CTGAAG	5 cut(s)	126, 408, 455, 539, 975
AdeI	CACNNNGTG	1 cut(s)	195
AfaI	GTAC	4 cut(s)	107, 491, 541, 794
AfiI	CCNNNNNNNGG	3 cut(s)	439, 677, 682
AflIII	ACRYGT	1 cut(s)	795
AgsI	TTSAA	7 cut(s)	331, 529, 590, 814, 836, 907, 1104
AluBI	AGCT	5 cut(s)	115, 165, 202, 224, 412
AluI	AGCT	5 cut(s)	115, 165, 202, 224, 412
Alw21I	GWGCWC	1 cut(s)	626
Alw26I	GTCTC	1 cut(s)	1084
Alw44I	GTGCAC	1 cut(s)	622
AlwI	GGATC	3 cut(s)	57, 135, 192
AoxI	GGCC	4 cut(s)	594, 690, 738, 807
ApaLI	GTGCAC	1 cut(s)	622
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	3 cut(s)	310, 463, 546
Asp700I	GAANNNNTTC	1 cut(s)	524
AspS9I	GGNCC	1 cut(s)	594
AsuC2I	CCSGG	1 cut(s)	504
AsuHPI	GGTGA	3 cut(s)	181, 292, 697
BaeGI	GKGCMC	1 cut(s)	626
BalI	TGGCCA	1 cut(s)	692
BauI	CACGAG	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	626
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	2 cut(s)	682, 694
BcgI	CGANNNNNNTGC	4 cut(s)	297, 331, 903, 937
BciVI	GTATCC	1 cut(s)	869
BcnI	CCSGG	1 cut(s)	504
BcoDI	GTCTC	1 cut(s)	1084
BfuI	GTATCC	1 cut(s)	869
BisI	GCNGC	2 cut(s)	351, 597
BlsI	GCNGC	2 cut(s)	352, 598
BmcAI	AGTACT	1 cut(s)	541
Bme1390I	CCNGG	1 cut(s)	504
BmgT120I	GGNCC	1 cut(s)	594
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	2 cut(s)	487, 835
BoxI	GACNNNNGTC	1 cut(s)	1076
BpmI	CTGGAG	2 cut(s)	388, 744
BpuEI	CTTGAG	2 cut(s)	188, 551
BpuMI	CCSGG	1 cut(s)	504
BsaAI	YACGTR	2 cut(s)	493, 796
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	4 cut(s)	676, 735, 871, 1063
Bsc4I	CCNNNNNNNGG	3 cut(s)	439, 677, 682
Bse1I	ACTGG	3 cut(s)	179, 547, 834
Bse3DI	GCAATG	3 cut(s)	105, 379, 1005
Bse8I	GATNNNNATC	1 cut(s)	126
BseDI	CCNNGG	4 cut(s)	676, 735, 871, 1063
BseGI	GGATG	3 cut(s)	421, 502, 795
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	3 cut(s)	439, 677, 682
BseMI	GCAATG	3 cut(s)	105, 379, 1005
BseMII	CTCAG	1 cut(s)	931
BseNI	ACTGG	3 cut(s)	179, 547, 834
BseSI	GKGCMC	1 cut(s)	626
BseXI	GCAGC	1 cut(s)	337
BseYI	CCCAGC	1 cut(s)	681
BsgI	GTGCAG	3 cut(s)	615, 636, 797
Bsh1285I	CGRYCG	1 cut(s)	1074
BshFI	GGCC	4 cut(s)	596, 692, 740, 809
BsiEI	CGRYCG	1 cut(s)	1074
BsiHKAI	GWGCWC	1 cut(s)	626
BsiSI	CCGG	2 cut(s)	440, 503
BsiWI	CGTACG	1 cut(s)	489
BslI	CCNNNNNNNGG	3 cut(s)	439, 677, 682
BsmAI	GTCTC	1 cut(s)	1084
BsnI	GGCC	4 cut(s)	596, 692, 740, 809
Bsp1286I	GDGCHC	1 cut(s)	626
Bsp143I	GATC	4 cut(s)	49, 121, 127, 184
BspACI	CCGC	4 cut(s)	169, 274, 597, 1088
BspANI	GGCC	4 cut(s)	596, 692, 740, 809
BspCNI	CTCAG	1 cut(s)	930
BspHI	TCATGA	1 cut(s)	897
BspPI	GGATC	3 cut(s)	57, 135, 192
BsrDI	GCAATG	3 cut(s)	105, 379, 1005
BsrI	ACTGG	3 cut(s)	179, 547, 834
BssECI	CCNNGG	4 cut(s)	676, 735, 871, 1063
BssMI	GATC	4 cut(s)	49, 121, 127, 184
BssNAI	GTATAC	2 cut(s)	430, 730
BssSI	CACGAG	1 cut(s)	238
BssT1I	CCWWGG	2 cut(s)	676, 1063
Bst1107I	GTATAC	2 cut(s)	430, 730
Bst2BI	CACGAG	1 cut(s)	238
Bst4CI	ACNGT	5 cut(s)	232, 296, 656, 892, 1075
BstBAI	YACGTR	2 cut(s)	493, 796
BstC8I	GCNNGC	4 cut(s)	167, 276, 280, 348
BstDEI	CTNAG	2 cut(s)	19, 917
BstDSI	CCRYGG	1 cut(s)	871
BstF5I	GGATG	3 cut(s)	421, 502, 795
BstKTI	GATC	4 cut(s)	52, 124, 130, 187
BstMAI	GTCTC	1 cut(s)	1084
BstMBI	GATC	4 cut(s)	49, 121, 127, 184
BstMCI	CGRYCG	1 cut(s)	1074
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 356, 815
BstPAI	GACNNNNGTC	1 cut(s)	1076
BstSCI	CCNGG	1 cut(s)	502
BstSLI	GKGCMC	1 cut(s)	626
BstV1I	GCAGC	1 cut(s)	337
BstX2I	RGATCY	2 cut(s)	49, 184
BstXI	CCANNNNNNTGG	1 cut(s)	700
BstYI	RGATCY	2 cut(s)	49, 184
BstZ17I	GTATAC	2 cut(s)	430, 730
BsuI	GTATCC	1 cut(s)	869
BsuRI	GGCC	4 cut(s)	596, 692, 740, 809
BtgI	CCRYGG	1 cut(s)	871
BtsCI	GGATG	3 cut(s)	421, 502, 795
BtsI	GCAGTG	2 cut(s)	303, 855
BtsIMutI	CAGTG	6 cut(s)	186, 301, 303, 661, 855, 999
Cac8I	GCNNGC	4 cut(s)	167, 276, 280, 348
CciI	TCATGA	1 cut(s)	897
Cfr13I	GGNCC	1 cut(s)	594
CseI	GACGC	1 cut(s)	743
Csp6I	GTAC	4 cut(s)	106, 490, 540, 793
CspCI	CAANNNNNGTGG	4 cut(s)	25, 49, 60, 84
CviAII	CATG	2 cut(s)	805, 898
CviQI	GTAC	4 cut(s)	106, 490, 540, 793
DdeI	CTNAG	2 cut(s)	19, 917
DpnI	GATC	4 cut(s)	51, 123, 129, 186
DpnII	GATC	4 cut(s)	49, 121, 127, 184
DraIII	CACNNNGTG	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	690
Eco130I	CCWWGG	2 cut(s)	676, 1063
Eco57I	CTGAAG	5 cut(s)	126, 408, 455, 539, 975
EcoT14I	CCWWGG	2 cut(s)	676, 1063
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	676, 1063
FaeI	CATG	2 cut(s)	808, 901
FalI	AAGNNNNNCTT	2 cut(s)	851, 883
FatI	CATG	2 cut(s)	804, 897
FauI	CCCGC	2 cut(s)	162, 267
FblI	GTMKAC	2 cut(s)	429, 729
Fnu4HI	GCNGC	2 cut(s)	351, 597
FokI	GGATG	3 cut(s)	428, 509, 802
Fsp4HI	GCNGC	2 cut(s)	351, 597
GluI	GCNGC	2 cut(s)	351, 597
GsaI	CCCAGC	1 cut(s)	685
GsuI	CTGGAG	2 cut(s)	388, 744
HaeIII	GGCC	4 cut(s)	596, 692, 740, 809
HapII	CCGG	2 cut(s)	440, 503
HgaI	GACGC	1 cut(s)	743
Hin1II	CATG	2 cut(s)	808, 901
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	5 cut(s)	137, 363, 558, 586, 864
HpaII	CCGG	2 cut(s)	440, 503
HphI	GGTGA	3 cut(s)	181, 292, 697
Hpy166II	GTNNAC	4 cut(s)	245, 430, 624, 730
Hpy188I	TCNGA	3 cut(s)	54, 228, 652
Hpy188III	TCNNGA	9 cut(s)	125, 131, 238, 367, 460, 568, 787, 836, 898
Hpy8I	GTNNAC	4 cut(s)	245, 430, 624, 730
HpyAV	CCTTC	4 cut(s)	371, 820, 970, 1105
HpyCH4III	ACNGT	5 cut(s)	232, 296, 656, 892, 1075
HpyCH4IV	ACGT	2 cut(s)	492, 795
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 356, 815
HpyF3I	CTNAG	2 cut(s)	19, 917
HpySE526I	ACGT	2 cut(s)	492, 795
Hsp92II	CATG	2 cut(s)	808, 901
Kzo9I	GATC	4 cut(s)	49, 121, 127, 184
LmnI	GCTCC	2 cut(s)	369, 505
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	2 cut(s)	487, 835
MaeII	ACGT	2 cut(s)	492, 795
MaeIII	GTNAC	3 cut(s)	214, 298, 382
MalI	GATC	4 cut(s)	51, 123, 129, 186
MboI	GATC	4 cut(s)	49, 121, 127, 184
MboII	GAAGA	4 cut(s)	132, 401, 532, 859
MfeI	CAATTG	1 cut(s)	1104
MflI	RGATCY	2 cut(s)	49, 184
MhlI	GDGCHC	1 cut(s)	626
MlsI	TGGCCA	1 cut(s)	692
MluCI	AATT	5 cut(s)	66, 310, 463, 546, 1104
MluNI	TGGCCA	1 cut(s)	692
MnlI	CCTC	6 cut(s)	25, 43, 167, 316, 730, 1061
Mox20I	TGGCCA	1 cut(s)	692
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	692
MseI	TTAA	2 cut(s)	578, 710
MslI	CAYNNNNRTG	1 cut(s)	698
Msp20I	TGGCCA	1 cut(s)	692
MspI	CCGG	2 cut(s)	440, 503
MspR9I	CCNGG	1 cut(s)	504
MunI	CAATTG	1 cut(s)	1104
MwoI	GCNNNNNNNGC	3 cut(s)	175, 356, 815
NciI	CCSGG	1 cut(s)	504
NdeII	GATC	4 cut(s)	49, 121, 127, 184
NlaIII	CATG	2 cut(s)	808, 901
NmuCI	GTSAC	1 cut(s)	298
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	897
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	5 cut(s)	137, 363, 558, 586, 864
Pfl23II	CGTACG	1 cut(s)	489
PkrI	GCNGC	2 cut(s)	352, 598
Ppu21I	YACGTR	2 cut(s)	493, 796
PshAI	GACNNNNGTC	1 cut(s)	1076
PspFI	CCCAGC	1 cut(s)	681
PspLI	CGTACG	1 cut(s)	489
PspPI	GGNCC	1 cut(s)	594
PsuI	RGATCY	2 cut(s)	49, 184
RsaI	GTAC	4 cut(s)	107, 491, 541, 794
RsaNI	GTAC	4 cut(s)	106, 490, 540, 793
RseI	CAYNNNNRTG	1 cut(s)	698
SaqAI	TTAA	2 cut(s)	578, 710
SatI	GCNGC	2 cut(s)	351, 597
Sau3AI	GATC	4 cut(s)	49, 121, 127, 184
Sau96I	GGNCC	1 cut(s)	594
ScaI	AGTACT	1 cut(s)	541
ScrFI	CCNGG	1 cut(s)	504
SduI	GDGCHC	1 cut(s)	626
SfaNI	GCATC	2 cut(s)	487, 835
SmiMI	CAYNNNNRTG	1 cut(s)	698
SmlI	CTYRAG	2 cut(s)	203, 566
SmoI	CTYRAG	2 cut(s)	203, 566
Sse9I	AATT	5 cut(s)	66, 310, 463, 546, 1104
SsiI	CCGC	4 cut(s)	169, 274, 597, 1088
SspI	AATATT	2 cut(s)	255, 970
StyD4I	CCNGG	1 cut(s)	502
StyI	CCWWGG	2 cut(s)	676, 1063
TaaI	ACNGT	5 cut(s)	232, 296, 656, 892, 1075
TaiI	ACGT	2 cut(s)	495, 798
TaqI	TCGA	4 cut(s)	159, 269, 923, 1070
TasI	AATT	5 cut(s)	66, 310, 463, 546, 1104
TatI	WGTACW	2 cut(s)	105, 539
TauI	GCSGC	1 cut(s)	599
TfiI	GAWTC	5 cut(s)	137, 363, 558, 586, 864
Tru1I	TTAA	2 cut(s)	578, 710
Tru9I	TTAA	2 cut(s)	578, 710
TscAI	CASTG	6 cut(s)	186, 301, 310, 661, 855, 999
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	9 cut(s)	150, 303, 390, 432, 592, 761, 869, 968, 1031
TspGWI	ACGGA	1 cut(s)	888
TspRI	CASTG	6 cut(s)	186, 301, 310, 661, 855, 999
VneI	GTGCAC	1 cut(s)	622
XapI	RAATTY	3 cut(s)	310, 463, 546
XcmI	CCANNNNNNNNNTGG	1 cut(s)	678
XmiI	GTMKAC	2 cut(s)	429, 729
XmnI	GAANNNNTTC	1 cut(s)	524
ZrmI	AGTACT	1 cut(s)	541
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.