Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007271

Physical Location & Seq

Genomic Coordinates Reverse (-)

16051877 .. 16054064

Gene Structure 2188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGACTGGCTTGCTGAATGATCCTAGCATTAAGGAATTAGCTGAACAGATAGCAAAGGATCCTTCATTCAACCAGATGGCAGACCAACTTCAGAAAACTTTTCAAGGTGTGTCAGTTGATGAAGGTGTCCCTCAGTTTGATAGTCAACAGTACTATTCCACCATGCAACAGGTTATGCAGAATCCTCAGTTCATGACCATGGCTGAGCGCCTTGGTAGTGCATTGATGCAGGATCCATCTATGAATACCATGCTTGAGAGTTTCGCCAATCCCTCGAGCAAAGATCAGCTTGAGGAACGCATGTCACGTATCAAAGATGATCCTTCTTTGAAACCTATTTTGGAAGAAATAGAAACTGGTGGTCCAGCTGCCATGATGAGATACTGGAATGATAAAGACGTTTTGCAGAAGTTGGGAGAAGCAATGGGTCTTGCAGTTGGGGATGCAGCTACTTCTACTGAAGCACCAGAAGAAGCAGAAGATGCCGGAAATGAGGATGAATCAATTGTTCATCACACTGCTAGTGTTGGTGACGTGGAGGGTTTGAAAGCTGCCTTAGCATCTGGTGCTGACAAGGATGAGGAAGATTCAGAAGGGAGGACAGCATTACATTTTGCATGTGGATATGGTGAGGTGAAGTGTGCTCAAGCTCTTCTTGAGGCTGGAGCAAGAGTCGATGCTCTTGATAAGAACAAAAACACCGCACTTCATTATGCAGCCGGTTATGGTAGGAAGGAATGCGTGGCACTTCTACTTGAGAATGGCGCAGCTGTCACTCTCCAGAACATGGACGGCAAAACCCCGATTGACGTTGCCAAGTTGAACAACCAAAATGACGTACTAAAGTTGCTGGAGAAGGACGCCTTCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009889 GO:0009941 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0019867 GO:0030941 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031326 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042170 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051861 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:0097367 GO:0098588 GO:0098805 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4

Protein Analysis

291

Amino Acids

31.44

Weight (kDa)

4.41

Isoelectric Point (pI)

33.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STI1-HOP_DP	PF17830	100 - 143	8.3e-09	STI1/HOP, DP domain
Ank_2	PF12796	165 - 227	3.3e-09	Ankyrin repeats (3 copies)
Ank_2	PF12796	171 - 261	8.3e-20	Ankyrin repeats (3 copies)
Ank	PF00023	199 - 230	1.1e-06	Ankyrin repeat
Ank_4	PF13637	206 - 252	4.4e-09	Ankyrin repeats (many copies)
Ank_5	PF13857	218 - 272	9.6e-11	Ankyrin repeats (many copies)
Ank_2	PF12796	224 - 285	1.4e-10	Ankyrin repeats (3 copies)
Ank	PF00023	231 - 262	7.6e-07	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17390 AT4G35450 AT4G35450 AT4G35450 AT4G35450 AT4G35450
fragaria_vesca	FvH4_2g17270 FvH4_2g17270
malus_domestica	MD05G1151600.v1.1 MD10G1145800.v1.1
prunus_persica	Prupe.8G184200_v2.0.a1
pyrus_communis	pycom05g14610 pycom05g14650 pycom10g12580
rosa_chinensis	RchiOBHm_Chr6g0281771
rosa_laevigata	RLG00000012936
rosa_multiflora	Rmu_ssc0000126.1_g000046
rosa_roxburghii	Rroxscaffold_7G00186810
rosa_rugosa	Rorug06G0143600 Rorug06G0143600
rosa_samantha	Rh6AG256300 Rh6BG259200 Rh6CG258200 Rh6DG250300
rosa_wichuraiana	Rw6G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	787
AciI	CCGC	1 cut(s)	702
AclWI	GGATC	6 cut(s)	14, 53, 66, 227, 240, 314
AcuI	CTGAAG	2 cut(s)	74, 480
AcyI	GRCGYC	1 cut(s)	861
AfaI	GTAC	2 cut(s)	152, 840
AfiI	CCNNNNNNNGG	1 cut(s)	787
AgsI	TTSAA	5 cut(s)	70, 104, 331, 547, 823
AjiI	CACGTC	1 cut(s)	535
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	7 cut(s)	41, 289, 368, 449, 551, 650, 770
AluI	AGCT	7 cut(s)	41, 289, 368, 449, 551, 650, 770
Alw21I	GWGCWC	1 cut(s)	646
AlwI	GGATC	6 cut(s)	14, 53, 66, 227, 240, 314
Ama87I	CYCGRG	1 cut(s)	274
ApeKI	GCWGC	5 cut(s)	368, 446, 551, 716, 767
AspLEI	GCGC	2 cut(s)	210, 767
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	3 cut(s)	542, 641, 646
AvaI	CYCGRG	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	362
BamHI	GGATCC	2 cut(s)	58, 232
Bbv12I	GWGCWC	1 cut(s)	646
BbvI	GCAGC	5 cut(s)	355, 458, 538, 728, 779
BccI	CCATC	2 cut(s)	70, 244
BceAI	ACGGC	1 cut(s)	808
BfaI	CTAG	2 cut(s)	24, 522
BfoI	RGCGCY	1 cut(s)	211
BisI	GCNGC	5 cut(s)	369, 447, 552, 717, 768
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	5 cut(s)	370, 448, 553, 718, 769
BmcAI	AGTACT	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	362
BmeT110I	CYCGRG	1 cut(s)	274
BmgBI	CACGTC	1 cut(s)	535
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	2 cut(s)	60, 234
BmsI	GCATC	5 cut(s)	216, 433, 472, 569, 667
BpmI	CTGGAG	3 cut(s)	684, 764, 872
Bpu10I	CCTNAGC	1 cut(s)	556
Bpu1102I	GCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	5 cut(s)	275, 311, 630, 677, 776
BsaAI	YACGTR	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	861
BsaJI	CCNNGG	2 cut(s)	198, 211
BsaXI	ACNNNNNCTCC	2 cut(s)	657, 687
Bsc4I	CCNNNNNNNGG	1 cut(s)	787
Bse118I	RCCGGY	1 cut(s)	719
Bse1I	ACTGG	3 cut(s)	10, 361, 389
Bse3DI	GCAATG	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	198, 211
BseGI	GGATG	3 cut(s)	448, 502, 583
BseLI	CCNNNNNNNGG	1 cut(s)	787
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	3 cut(s)	146, 195, 200
BseNI	ACTGG	3 cut(s)	10, 361, 389
BseXI	GCAGC	5 cut(s)	355, 458, 538, 728, 779
BsiHKAI	GWGCWC	1 cut(s)	646
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	2 cut(s)	486, 720
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	787
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	743
BsoBI	CYCGRG	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	646
Bsp143I	GATC	5 cut(s)	19, 58, 232, 283, 319
Bsp1720I	GCTNAGC	1 cut(s)	204
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	1 cut(s)	702
BspCNI	CTCAG	3 cut(s)	145, 196, 199
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	60, 234
BspPI	GGATC	6 cut(s)	14, 53, 66, 227, 240, 314
BspQI	GCTCTTC	1 cut(s)	657
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	719
BsrI	ACTGG	3 cut(s)	10, 361, 389
BssAI	RCCGGY	1 cut(s)	719
BssECI	CCNNGG	2 cut(s)	198, 211
BssMI	GATC	5 cut(s)	19, 58, 232, 283, 319
BssNI	GRCGYC	1 cut(s)	861
BssT1I	CCWWGG	2 cut(s)	198, 211
Bst4CI	ACNGT	1 cut(s)	150
Bst6I	CTCTTC	1 cut(s)	657
BstACI	GRCGYC	1 cut(s)	861
BstAPI	GCANNNNNTGC	2 cut(s)	482, 566
BstBAI	YACGTR	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	4 cut(s)	132, 186, 204, 556
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	3 cut(s)	448, 502, 583
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	2 cut(s)	210, 767
BstKTI	GATC	5 cut(s)	22, 61, 235, 286, 322
BstMBI	GATC	5 cut(s)	19, 58, 232, 283, 319
BstMWI	GCNNNNNNNGC	3 cut(s)	482, 557, 566
BstNSI	RCATGY	2 cut(s)	304, 621
BstV1I	GCAGC	5 cut(s)	355, 458, 538, 728, 779
BstX2I	RGATCY	2 cut(s)	58, 232
BstYI	RGATCY	2 cut(s)	58, 232
BtgI	CCRYGG	1 cut(s)	198
BtrI	CACGTC	1 cut(s)	535
BtsCI	GGATG	3 cut(s)	448, 502, 583
BtsI	GCAGTG	1 cut(s)	516
BtsIMutI	CAGTG	1 cut(s)	516
Cac8I	GCNNGC	1 cut(s)	11
CciI	TCATGA	1 cut(s)	192
CfoI	GCGC	2 cut(s)	210, 767
Cfr10I	RCCGGY	1 cut(s)	719
Cfr13I	GGNCC	1 cut(s)	362
Csp6I	GTAC	2 cut(s)	151, 839
CviAII	CATG	8 cut(s)	163, 193, 199, 250, 301, 373, 618, 787
CviQI	GTAC	2 cut(s)	151, 839
DdeI	CTNAG	4 cut(s)	132, 186, 204, 556
DpnI	GATC	5 cut(s)	21, 60, 234, 285, 321
DpnII	GATC	5 cut(s)	19, 58, 232, 283, 319
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
Eco130I	CCWWGG	2 cut(s)	198, 211
Eco47I	GGWCC	1 cut(s)	362
Eco57I	CTGAAG	2 cut(s)	74, 480
Eco88I	CYCGRG	1 cut(s)	274
EcoT14I	CCWWGG	2 cut(s)	198, 211
ErhI	CCWWGG	2 cut(s)	198, 211
FaeI	CATG	8 cut(s)	166, 196, 202, 253, 304, 376, 621, 790
FalI	AAGNNNNNCTT	5 cut(s)	273, 305, 639, 671, 848
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	8 cut(s)	162, 192, 198, 249, 300, 372, 617, 786
Fnu4HI	GCNGC	5 cut(s)	369, 447, 552, 717, 768
FokI	GGATG	3 cut(s)	455, 509, 590
Fsp4HI	GCNGC	5 cut(s)	369, 447, 552, 717, 768
FspBI	CTAG	2 cut(s)	24, 522
GlaI	GCGC	2 cut(s)	209, 766
GluI	GCNGC	5 cut(s)	369, 447, 552, 717, 768
GsuI	CTGGAG	3 cut(s)	684, 764, 872
HaeII	RGCGCY	1 cut(s)	211
HapII	CCGG	2 cut(s)	486, 720
HhaI	GCGC	2 cut(s)	210, 767
Hin1I	GRCGYC	1 cut(s)	861
Hin1II	CATG	8 cut(s)	166, 196, 202, 253, 304, 376, 621, 790
Hin6I	GCGC	2 cut(s)	208, 765
HinP1I	GCGC	2 cut(s)	208, 765
HincII	GTYRAC	1 cut(s)	146
HindII	GTYRAC	1 cut(s)	146
HinfI	GANTC	4 cut(s)	181, 500, 587, 672
HpaII	CCGG	2 cut(s)	486, 720
HphI	GGTGA	3 cut(s)	542, 641, 646
Hpy166II	GTNNAC	1 cut(s)	146
Hpy188I	TCNGA	2 cut(s)	93, 592
Hpy188III	TCNNGA	4 cut(s)	193, 656, 683, 781
Hpy8I	GTNNAC	1 cut(s)	146
HpyAV	CCTTC	6 cut(s)	72, 116, 333, 587, 727, 850
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4IV	ACGT	5 cut(s)	307, 399, 534, 810, 837
HpyCH4V	TGCA	9 cut(s)	166, 178, 221, 229, 406, 434, 446, 617, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	482, 557, 566
HpyF3I	CTNAG	4 cut(s)	132, 186, 204, 556
HpySE526I	ACGT	5 cut(s)	307, 399, 534, 810, 837
Hsp92I	GRCGYC	1 cut(s)	861
Hsp92II	CATG	8 cut(s)	166, 196, 202, 253, 304, 376, 621, 790
HspAI	GCGC	2 cut(s)	208, 765
Kzo9I	GATC	5 cut(s)	19, 58, 232, 283, 319
LguI	GCTCTTC	1 cut(s)	657
LmnI	GCTCC	1 cut(s)	665
Lsp1109I	GCAGC	5 cut(s)	355, 458, 538, 728, 779
LweI	GCATC	5 cut(s)	216, 433, 472, 569, 667
MaeI	CTAG	2 cut(s)	24, 522
MaeII	ACGT	5 cut(s)	307, 399, 534, 810, 837
MaeIII	GTNAC	3 cut(s)	303, 530, 772
MalI	GATC	5 cut(s)	21, 60, 234, 285, 321
MboI	GATC	5 cut(s)	19, 58, 232, 283, 319
MboII	GAAGA	5 cut(s)	356, 482, 491, 596, 644
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	2 cut(s)	58, 232
MhlI	GDGCHC	1 cut(s)	646
MluCI	AATT	2 cut(s)	35, 504
MlyI	GAGTC	1 cut(s)	681
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	197
MspA1I	CMGCKG	2 cut(s)	368, 770
MspI	CCGG	2 cut(s)	486, 720
MunI	CAATTG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	743
MwoI	GCNNNNNNNGC	3 cut(s)	482, 557, 566
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	5 cut(s)	19, 58, 232, 283, 319
NlaIII	CATG	8 cut(s)	166, 196, 202, 253, 304, 376, 621, 790
NlaIV	GGNNCC	2 cut(s)	60, 234
NmuCI	GTSAC	3 cut(s)	303, 530, 772
NspI	RCATGY	2 cut(s)	304, 621
PaeR7I	CTCGAG	1 cut(s)	274
PagI	TCATGA	1 cut(s)	192
PciSI	GCTCTTC	1 cut(s)	657
PcsI	WCGNNNNNNNCGW	1 cut(s)	304
PctI	GAATGC	1 cut(s)	743
PfeI	GAWTC	3 cut(s)	181, 500, 587
PflMI	CCANNNNNTGG	1 cut(s)	787
PkrI	GCNGC	5 cut(s)	370, 448, 553, 718, 769
PleI	GAGTC	1 cut(s)	680
PpsI	GAGTC	1 cut(s)	680
Ppu21I	YACGTR	1 cut(s)	308
PspN4I	GGNNCC	2 cut(s)	60, 234
PspPI	GGNCC	1 cut(s)	362
PspXI	VCTCGAGB	1 cut(s)	274
PsuI	RGATCY	2 cut(s)	58, 232
PvuII	CAGCTG	2 cut(s)	368, 770
RsaI	GTAC	2 cut(s)	152, 840
RsaNI	GTAC	2 cut(s)	151, 839
RseI	CAYNNNNRTG	1 cut(s)	197
SapI	GCTCTTC	1 cut(s)	657
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	5 cut(s)	369, 447, 552, 717, 768
Sau3AI	GATC	5 cut(s)	19, 58, 232, 283, 319
Sau96I	GGNCC	1 cut(s)	362
ScaI	AGTACT	1 cut(s)	152
SchI	GAGTC	1 cut(s)	681
SduI	GDGCHC	1 cut(s)	646
SfaNI	GCATC	5 cut(s)	216, 433, 472, 569, 667
Sfr274I	CTCGAG	1 cut(s)	274
SinI	GGWCC	1 cut(s)	362
SlaI	CTCGAG	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	6 cut(s)	254, 274, 290, 645, 656, 755
SmoI	CTYRAG	6 cut(s)	254, 274, 290, 645, 656, 755
Sse9I	AATT	2 cut(s)	35, 504
SsiI	CCGC	1 cut(s)	702
SspMI	CTAG	2 cut(s)	24, 522
StyI	CCWWGG	2 cut(s)	198, 211
TaaI	ACNGT	1 cut(s)	150
TaiI	ACGT	5 cut(s)	310, 402, 537, 813, 840
TaqI	TCGA	2 cut(s)	275, 675
TasI	AATT	2 cut(s)	35, 504
TatI	WGTACW	1 cut(s)	150
TfiI	GAWTC	3 cut(s)	181, 500, 587
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	3 cut(s)	303, 530, 772
TseI	GCWGC	5 cut(s)	368, 446, 551, 716, 767
Tsp45I	GTSAC	3 cut(s)	303, 530, 772
TspDTI	ATGAA	7 cut(s)	54, 135, 181, 257, 500, 513, 698
TspRI	CASTG	1 cut(s)	523
Van91I	CCANNNNNTGG	1 cut(s)	787
VpaK11BI	GGWCC	1 cut(s)	362
XceI	RCATGY	2 cut(s)	304, 621
XhoI	CTCGAG	1 cut(s)	274
XspI	CTAG	2 cut(s)	24, 522
ZrmI	AGTACT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.