Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0013120

Physical Location & Seq

Genomic Coordinates Forward (+)

16354761 .. 16355971

Gene Structure 1211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGATTGATGGGTTGGTTAGGAATGAGGAGATGAATAGGGCTTTGGAGGTGTTTAGGGAGATGCAGAGGAATAATGTGAGGCCTAATGAAGTTACTGTTGTTTGTGTTTTATCTGCTTGTTCGTATTTGGGAGCATTGGAGCTCGGAAGATGGGTTCACTCTTACATAGATAAGTATGACATCGAATTCAATTACATTGTAGGTGGTGCTCTGATTAATATGTATTCGAGGTGTGGTGATATTGATGAGGCACTGGCAGTGTTTGGTCGCTCGAGTCAGCTTGAAGAAGCTTACAATTTCATTGCGGGAATGAAATTGGCACTGGATTATATCATGTTGGGGGCTTTGCTAAGTGCTTGTAAAATCCATGGGAACCTCGAATTAGGAGAAAGGGTAGCCGAAATATTGGTGAATTGTGGTAACGCAGATTCGGGAACTTACGTACTGCTACCAAATGCATATGCTTCATCAGGGAGGTGGAAAGAGGCTACACAAGTGAGAGCAGAGATGAAGGAAAATGGAACCCCAAAGGAGCCTGGTTGTAGCTTGATTGAAGTAAACAATGAGATCCATGAGTTCCTCTTGGGAGACGTCAGACACCCGAAGAAAGAGGAAATCTACAAAAAGTTAACGGAGCTAATCCATGAACTGAAATCAGAAGGATACTTGCCTGCAACAGAGGCGGTTTTGCATGATATTGAAGATACGCAAAAGGAATTGGCTCTGTCGATACATAGTGAGAGGCTTGCGATATGCTATGGGCTAATTGCTACAAAACGAGGTACGACTTTGAGGATTGTAAATAACTTAAGGGTTTGCAGTGACTGCCACTCAATGATCAAATTCATAGCTAAGATCACCAACAGAAAGATTGTCGTTAGGGATCGCAAAAGGTTCCACCATTTTGAGAGGGGGGTTTGTTCTTGTGCTGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

314

Amino Acids

35.42

Weight (kDa)

6.09

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	1 - 40	3.1e-09	PPR repeat family
E_motif	PF20431	123 - 185	3.5e-18	E motif
DYW_deaminase	PF14432	221 - 313	5.4e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59200
fragaria_vesca	FvH4_2g17580
malus_domestica	MD10G1149200.v1.1 MD10G1149700.v1.1
prunus_persica	Prupe.8G188000_v2.0.a1
pyrus_communis	pycom10g12880 pycom10g12910
rosa_chinensis	RchiOBHm_Chr6g0282521
rosa_laevigata	RLG00000012888
rosa_multiflora	Rmu_sc0000283.1_g000009 Rmu_sc0000283.1_g000011 Rmu_sc0000283.1_g000012 Rmu_sc0005697.1_g000029
rosa_rugosa	Rorug06G0147100 Rorug06G0147200
rosa_samantha	Rh6CG262700 Rh6DG254600
rosa_wichuraiana	Rw6G022520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	594
AciI	CCGC	2 cut(s)	305, 683
AclWI	GGATC	2 cut(s)	562, 891
AcsI	RAATTY	2 cut(s)	185, 842
AcyI	GRCGYC	1 cut(s)	591
AfaI	GTAC	2 cut(s)	444, 784
AflII	CTTAAG	1 cut(s)	808
AgsI	TTSAA	4 cut(s)	190, 284, 554, 701
AjnI	CCWGG	1 cut(s)	535
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AloI	GAACNNNNNNTCC	2 cut(s)	138, 170
AluBI	AGCT	6 cut(s)	142, 280, 290, 546, 637, 851
AluI	AGCT	6 cut(s)	142, 280, 290, 546, 637, 851
Alw21I	GWGCWC	2 cut(s)	144, 211
Alw26I	GTCTC	1 cut(s)	582
AlwI	GGATC	2 cut(s)	562, 891
AlwNI	CAGNNNCTG	1 cut(s)	825
Ama87I	CYCGRG	1 cut(s)	271
AoxI	GGCC	1 cut(s)	80
ApoI	RAATTY	2 cut(s)	185, 842
AseI	ATTAAT	1 cut(s)	216
AsuHPI	GGTGA	3 cut(s)	248, 421, 850
AvaI	CYCGRG	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	144
Bbv12I	GWGCWC	2 cut(s)	144, 211
BccI	CCATC	2 cut(s)	2, 144
BciT130I	CCWGG	1 cut(s)	537
BciVI	GTATCC	1 cut(s)	656
BclI	TGATCA	1 cut(s)	837
BcoDI	GTCTC	1 cut(s)	582
BfrI	CTTAAG	1 cut(s)	808
BfuI	GTATCC	1 cut(s)	656
Bme1390I	CCNGG	1 cut(s)	537
BmeT110I	CYCGRG	1 cut(s)	271
BmiI	GGNNCC	4 cut(s)	374, 523, 534, 896
BmrFI	CCNGG	1 cut(s)	537
BmsI	GCATC	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	442
BsaHI	GRCGYC	1 cut(s)	591
BsaJI	CCNNGG	1 cut(s)	367
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bse1I	ACTGG	2 cut(s)	258, 327
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	1 cut(s)	367
BseMI	GCAATG	1 cut(s)	300
BseNI	ACTGG	2 cut(s)	258, 327
BseRI	GAGGAG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	82
BsiHKAI	GWGCWC	2 cut(s)	144, 211
BsiHKCI	CYCGRG	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	582
BsmBI	CGTCTC	1 cut(s)	582
BsnI	GGCC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	271
Bsp1286I	GDGCHC	2 cut(s)	144, 211
Bsp143I	GATC	4 cut(s)	567, 837, 855, 883
Bsp19I	CCATGG	1 cut(s)	367
BspACI	CCGC	2 cut(s)	305, 683
BspANI	GGCC	1 cut(s)	82
BspLI	GGNNCC	4 cut(s)	374, 523, 534, 896
BspPI	GGATC	2 cut(s)	562, 891
BspTI	CTTAAG	1 cut(s)	808
BsrDI	GCAATG	1 cut(s)	300
BsrI	ACTGG	2 cut(s)	258, 327
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	4 cut(s)	567, 837, 855, 883
BssNI	GRCGYC	1 cut(s)	591
BssT1I	CCWWGG	1 cut(s)	367
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	1 cut(s)	97
BstACI	GRCGYC	1 cut(s)	591
BstAFI	CTTAAG	1 cut(s)	808
BstAPI	GCANNNNNTGC	1 cut(s)	825
BstBAI	YACGTR	1 cut(s)	442
BstC8I	GCNNGC	2 cut(s)	672, 747
BstDEI	CTNAG	2 cut(s)	350, 852
BstDSI	CCRYGG	1 cut(s)	367
BstKTI	GATC	4 cut(s)	570, 840, 858, 886
BstMAI	GTCTC	1 cut(s)	582
BstMBI	GATC	4 cut(s)	567, 837, 855, 883
BstMWI	GCNNNNNNNGC	2 cut(s)	680, 825
BstNI	CCWGG	1 cut(s)	537
BstSCI	CCNGG	1 cut(s)	535
BstSNI	TACGTA	1 cut(s)	442
BstX2I	RGATCY	1 cut(s)	567
BstYI	RGATCY	1 cut(s)	567
BsuI	GTATCC	1 cut(s)	656
BsuRI	GGCC	1 cut(s)	82
BtgI	CCRYGG	1 cut(s)	367
BtsI	GCAGTG	2 cut(s)	264, 826
BtsIMutI	CAGTG	4 cut(s)	251, 264, 320, 826
Cac8I	GCNNGC	2 cut(s)	672, 747
CaiI	CAGNNNCTG	1 cut(s)	825
Csp6I	GTAC	2 cut(s)	443, 783
CviAII	CATG	5 cut(s)	334, 368, 572, 644, 692
CviQI	GTAC	2 cut(s)	443, 783
DdeI	CTNAG	2 cut(s)	350, 852
DpnI	GATC	4 cut(s)	569, 839, 857, 885
DpnII	GATC	4 cut(s)	567, 837, 855, 883
Ecl136II	GAGCTC	1 cut(s)	142
Eco105I	TACGTA	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	367
Eco147I	AGGCCT	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	142
Eco88I	CYCGRG	1 cut(s)	271
EcoICRI	GAGCTC	1 cut(s)	142
EcoRI	GAATTC	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	367
EcoT22I	ATGCAT	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	367
Esp3I	CGTCTC	1 cut(s)	582
FaeI	CATG	5 cut(s)	337, 371, 575, 647, 695
FatI	CATG	5 cut(s)	333, 367, 571, 643, 691
FauI	CCCGC	1 cut(s)	298
FauNDI	CATATG	1 cut(s)	460
FbaI	TGATCA	1 cut(s)	837
FriOI	GRGCYC	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	591
Hin1II	CATG	5 cut(s)	337, 371, 575, 647, 695
HincII	GTYRAC	1 cut(s)	630
HindII	GTYRAC	1 cut(s)	630
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	2 cut(s)	274, 428
HpaI	GTTAAC	1 cut(s)	630
HphI	GGTGA	3 cut(s)	248, 421, 850
Hpy166II	GTNNAC	3 cut(s)	157, 559, 630
Hpy188I	TCNGA	4 cut(s)	146, 213, 596, 658
Hpy188III	TCNNGA	1 cut(s)	432
Hpy8I	GTNNAC	3 cut(s)	157, 559, 630
HpyAV	CCTTC	2 cut(s)	505, 653
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	2 cut(s)	441, 591
HpyCH4V	TGCA	5 cut(s)	64, 458, 674, 691, 819
HpyF10VI	GCNNNNNNNGC	2 cut(s)	680, 825
HpyF3I	CTNAG	2 cut(s)	350, 852
HpySE526I	ACGT	2 cut(s)	441, 591
Hsp92I	GRCGYC	1 cut(s)	591
Hsp92II	CATG	5 cut(s)	337, 371, 575, 647, 695
Ksp22I	TGATCA	1 cut(s)	837
KspAI	GTTAAC	1 cut(s)	630
Kzo9I	GATC	4 cut(s)	567, 837, 855, 883
LmnI	GCTCC	4 cut(s)	131, 139, 532, 634
LpnPI	CCDG	6 cut(s)	239, 308, 456, 522, 549, 684
LweI	GCATC	1 cut(s)	51
MaeII	ACGT	2 cut(s)	441, 591
MaeIII	GTNAC	3 cut(s)	91, 419, 821
MalI	GATC	4 cut(s)	569, 839, 857, 885
MboI	GATC	4 cut(s)	567, 837, 855, 883
MboII	GAAGA	4 cut(s)	159, 296, 616, 713
MflI	RGATCY	1 cut(s)	567
MhlI	GDGCHC	2 cut(s)	144, 211
MluCI	AATT	9 cut(s)	185, 190, 295, 314, 380, 412, 716, 765, 842
MlyI	GAGTC	1 cut(s)	283
Mph1103I	ATGCAT	1 cut(s)	460
MseI	TTAA	3 cut(s)	216, 629, 809
MspCI	CTTAAG	1 cut(s)	808
MspR9I	CCNGG	1 cut(s)	537
MvaI	CCWGG	1 cut(s)	537
MwoI	GCNNNNNNNGC	2 cut(s)	680, 825
NcoI	CCATGG	1 cut(s)	367
NdeI	CATATG	1 cut(s)	460
NdeII	GATC	4 cut(s)	567, 837, 855, 883
NlaIII	CATG	5 cut(s)	337, 371, 575, 647, 695
NlaIV	GGNNCC	4 cut(s)	374, 523, 534, 896
NmuCI	GTSAC	1 cut(s)	821
NsiI	ATGCAT	1 cut(s)	460
PaeR7I	CTCGAG	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	428
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
Ppu21I	YACGTR	1 cut(s)	442
PshBI	ATTAAT	1 cut(s)	216
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	4 cut(s)	374, 523, 534, 896
PspXI	VCTCGAGB	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	825
PsuI	RGATCY	1 cut(s)	567
RsaI	GTAC	2 cut(s)	444, 784
RsaNI	GTAC	2 cut(s)	443, 783
SacI	GAGCTC	1 cut(s)	144
SaqAI	TTAA	3 cut(s)	216, 629, 809
Sau3AI	GATC	4 cut(s)	567, 837, 855, 883
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	537
SduI	GDGCHC	2 cut(s)	144, 211
SfaNI	GCATC	1 cut(s)	51
Sfr274I	CTCGAG	1 cut(s)	271
SlaI	CTCGAG	1 cut(s)	271
SmlI	CTYRAG	2 cut(s)	271, 808
SmoI	CTYRAG	2 cut(s)	271, 808
SnaBI	TACGTA	1 cut(s)	442
Sse9I	AATT	9 cut(s)	185, 190, 295, 314, 380, 412, 716, 765, 842
SseBI	AGGCCT	1 cut(s)	82
SsiI	CCGC	2 cut(s)	305, 683
SspI	AATATT	1 cut(s)	405
SstI	GAGCTC	1 cut(s)	144
StuI	AGGCCT	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	535
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	2 cut(s)	444, 594
TaqI	TCGA	5 cut(s)	183, 227, 272, 378, 728
TasI	AATT	9 cut(s)	185, 190, 295, 314, 380, 412, 716, 765, 842
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	3 cut(s)	216, 629, 809
Tru9I	TTAA	3 cut(s)	216, 629, 809
TscAI	CASTG	4 cut(s)	258, 264, 327, 826
TseFI	GTSAC	1 cut(s)	821
Tsp45I	GTSAC	1 cut(s)	821
TspDTI	ATGAA	8 cut(s)	47, 102, 289, 326, 456, 524, 660, 835
TspGWI	ACGGA	1 cut(s)	647
TspRI	CASTG	4 cut(s)	258, 264, 327, 826
Vha464I	CTTAAG	1 cut(s)	808
VspI	ATTAAT	1 cut(s)	216
XapI	RAATTY	2 cut(s)	185, 842
XhoI	CTCGAG	1 cut(s)	271
ZraI	GACGTC	1 cut(s)	592
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.