pycom10g12940

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011730
Physical Location & Seq
Reverse (-)
16419531 .. 16421292
1762 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 699 bp
ATGGAGCATAGATTCGATAGAAGGCCAAGACCTTGGCTTGGTTTGATTGGAAGCGACCCCAAATCCCCCGGAGCACCTGAAACTTCGGTCGAAAGGGACTTGAATGCAGTTGGAGAACCATATGTTGGTATGGAGTTTGAGTCTGAAGATGCTGCCAAGGAGTTTTACGAAGATTATGCAAGGCGTGCTGGATTCATCATGCGTATAGGCCAGTGTCGTCGATCACATGTTGAGAAGAGAATTCTTTCCCGTAAGCTATCCTGCAATAAGCAAGGTGGGCGTTCTGTAAAAGCTAGAGACCAAGTCCGGTCAGTTCGAAGACCGCAACCTACAACAGGAGAAGGGTGTAAAGCGATGATGCTTGTCAAACTTAAAAAATCTGGAAAATGGGTCATTACAAGAGTTGTTAAGGACCACACTCATCCACTTATAGTTTCTTCCGGGAATTCTATGGATGCAAAGGATATGAAGATTGCGGAACTCACTTTGGACCTGGAGCGTGAAGAGCAATTATGTGGACAATATCGTGAGCTACTACTTACATTGCTGAATCATGTTGAGGAGGAGACGGAAGACATAGCAACGAAAGTTAGAGGAGTCGTTAACTACGTAAGAGAATTTGAGACTCAAGTTGAAGGGATTCCAGAAAATCAAATGGAGTCAAGTTCGAGGGCTTCCTCAAAATCAAACGGAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

233

Amino Acids

26.35

Weight (kDa)

8.3

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 54 - 144 5.4e-25 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 125
AciI CCGC 2 cut(s) 323, 476
AcsI RAATTY 3 cut(s) 240, 445, 617
AcuI CTGAAG 1 cut(s) 165
AfiI CCNNNNNNNGG 3 cut(s) 38, 125, 335
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 2 cut(s) 103, 635
AjnI CCWGG 1 cut(s) 492
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AluBI AGCT 3 cut(s) 256, 293, 532
AluI AGCT 3 cut(s) 256, 293, 532
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 4 cut(s) 291, 560, 617, 687
AoxI GGCC 2 cut(s) 23, 208
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 3 cut(s) 240, 445, 617
Asp700I GAANNNNTTC 2 cut(s) 244, 639
AspS9I GGNCC 2 cut(s) 412, 490
AsuC2I CCSGG 2 cut(s) 69, 442
AsuII TTCGAA 1 cut(s) 316
AvaII GGWCC 2 cut(s) 412, 490
BbsI GAAGAC 2 cut(s) 325, 579
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 139
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciT130I CCWGG 1 cut(s) 494
BcnI CCSGG 2 cut(s) 69, 442
BcoDI GTCTC 4 cut(s) 291, 560, 617, 687
BfaI CTAG 1 cut(s) 294
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 3 cut(s) 69, 442, 494
Bme18I GGWCC 2 cut(s) 412, 490
BmgT120I GGNCC 2 cut(s) 412, 490
BmrFI CCNGG 3 cut(s) 69, 442, 494
BmsI GCATC 3 cut(s) 139, 348, 445
BpiI GAAGAC 2 cut(s) 325, 579
BpmI CTGGAG 1 cut(s) 515
Bpu14I TTCGAA 1 cut(s) 316
BpuEI CTTGAG 1 cut(s) 612
BpuMI CCSGG 2 cut(s) 69, 442
BsaAI YACGTR 1 cut(s) 610
BsaI GGTCTC 1 cut(s) 291
BsaJI CCNNGG 3 cut(s) 32, 67, 156
BsaWI WCCGGW 1 cut(s) 306
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 125, 335
Bse1I ACTGG 1 cut(s) 211
Bse3DI GCAATG 1 cut(s) 542
BseBI CCWGG 1 cut(s) 494
BseDI CCNNGG 3 cut(s) 32, 67, 156
BseGI GGATG 2 cut(s) 421, 460
BseLI CCNNNNNNNGG 3 cut(s) 38, 125, 335
BseMI GCAATG 1 cut(s) 542
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 3 cut(s) 575, 578, 609
BseXI GCAGC 1 cut(s) 139
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 2 cut(s) 25, 210
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 76
BsiSI CCGG 3 cut(s) 69, 307, 441
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 3 cut(s) 38, 125, 335
BsmAI GTCTC 4 cut(s) 291, 560, 617, 687
BsmBI CGTCTC 1 cut(s) 560
BsmFI GGGAC 1 cut(s) 110
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 2 cut(s) 25, 210
Bso31I GGTCTC 1 cut(s) 291
Bsp119I TTCGAA 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 1 cut(s) 221
BspACI CCGC 2 cut(s) 323, 476
BspANI GGCC 2 cut(s) 25, 210
BspQI GCTCTTC 1 cut(s) 498
BspT104I TTCGAA 1 cut(s) 316
BspTNI GGTCTC 1 cut(s) 291
BsrDI GCAATG 1 cut(s) 542
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 3 cut(s) 32, 67, 156
BssMI GATC 1 cut(s) 221
BssT1I CCWWGG 2 cut(s) 32, 156
Bst2UI CCWGG 1 cut(s) 494
Bst6I CTCTTC 2 cut(s) 230, 498
BstAPI GCANNNNNTGC 1 cut(s) 185
BstBAI YACGTR 1 cut(s) 610
BstBI TTCGAA 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 186
BstENI CCTNNNNNAGG 1 cut(s) 333
BstF5I GGATG 2 cut(s) 421, 460
BstKTI GATC 1 cut(s) 224
BstMAI GTCTC 4 cut(s) 291, 560, 617, 687
BstMBI GATC 1 cut(s) 221
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 3 cut(s) 185, 277, 505
BstNI CCWGG 1 cut(s) 494
BstNSI RCATGY 1 cut(s) 230
BstSCI CCNGG 3 cut(s) 67, 440, 492
BstSNI TACGTA 1 cut(s) 610
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 2 cut(s) 325, 579
BstXI CCANNNNNNTGG 1 cut(s) 33
BsuRI GGCC 2 cut(s) 25, 210
BtgZI GCGATG 1 cut(s) 368
BtsCI GGATG 2 cut(s) 421, 460
BtsIMutI CAGTG 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 186
Cfr13I GGNCC 2 cut(s) 412, 490
CviAII CATG 3 cut(s) 199, 227, 554
CviJI RGCY 7 cut(s) 25, 37, 210, 256, 293, 532, 674
CviKI_1 RGCY 7 cut(s) 25, 37, 210, 256, 293, 532, 674
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
Eam1104I CTCTTC 2 cut(s) 230, 498
EarI CTCTTC 2 cut(s) 230, 498
Eco105I TACGTA 1 cut(s) 610
Eco130I CCWWGG 2 cut(s) 32, 156
Eco31I GGTCTC 1 cut(s) 291
Eco47I GGWCC 2 cut(s) 412, 490
Eco57I CTGAAG 1 cut(s) 165
EcoNI CCTNNNNNAGG 1 cut(s) 333
EcoRI GAATTC 2 cut(s) 240, 445
EcoRII CCWGG 1 cut(s) 492
EcoT14I CCWWGG 2 cut(s) 32, 156
ErhI CCWWGG 2 cut(s) 32, 156
Esp3I CGTCTC 1 cut(s) 560
FaeI CATG 3 cut(s) 202, 230, 557
FaqI GGGAC 1 cut(s) 110
FatI CATG 3 cut(s) 198, 226, 553
FauNDI CATATG 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 2 cut(s) 408, 467
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 294
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 515
HaeIII GGCC 2 cut(s) 25, 210
HapII CCGG 3 cut(s) 69, 307, 441
Hin1II CATG 3 cut(s) 202, 230, 557
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HinfI GANTC 8 cut(s) 12, 140, 192, 550, 597, 625, 640, 659
HpaI GTTAAC 1 cut(s) 604
HpaII CCGG 3 cut(s) 69, 307, 441
Hpy166II GTNNAC 2 cut(s) 518, 604
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 3 cut(s) 381, 527, 644
Hpy8I GTNNAC 2 cut(s) 518, 604
Hpy99I CGWCG 1 cut(s) 222
HpyAV CCTTC 3 cut(s) 15, 335, 629
HpyCH4IV ACGT 1 cut(s) 609
HpyCH4V TGCA 4 cut(s) 107, 179, 264, 458
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 277, 505
HpySE526I ACGT 1 cut(s) 609
Hsp92II CATG 3 cut(s) 202, 230, 557
KspAI GTTAAC 1 cut(s) 604
Kzo9I GATC 1 cut(s) 221
LguI GCTCTTC 1 cut(s) 498
LmnI GCTCC 3 cut(s) 4, 71, 496
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 3 cut(s) 139, 348, 445
MaeI CTAG 1 cut(s) 294
MaeII ACGT 1 cut(s) 609
MalI GATC 1 cut(s) 223
MboI GATC 1 cut(s) 221
MboII GAAGA 8 cut(s) 158, 182, 247, 330, 429, 481, 515, 584
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 4 cut(s) 240, 445, 509, 617
MlyI GAGTC 4 cut(s) 149, 606, 619, 668
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 5 cut(s) 553, 556, 587, 663, 688
MroXI GAANNNNTTC 2 cut(s) 244, 639
MseI TTAA 3 cut(s) 372, 408, 603
MspI CCGG 3 cut(s) 69, 307, 441
MspR9I CCNGG 3 cut(s) 69, 442, 494
Mva1269I GAATGC 1 cut(s) 109
MvaI CCWGG 1 cut(s) 494
MwoI GCNNNNNNNGC 3 cut(s) 185, 277, 505
NciI CCSGG 2 cut(s) 69, 442
NdeI CATATG 1 cut(s) 121
NdeII GATC 1 cut(s) 221
NlaIII CATG 3 cut(s) 202, 230, 557
NspI RCATGY 1 cut(s) 230
NspV TTCGAA 1 cut(s) 316
PciI ACATGT 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 498
PcsI WCGNNNNNNNCGW 1 cut(s) 606
PctI GAATGC 1 cut(s) 109
PdmI GAANNNNTTC 2 cut(s) 244, 639
PfeI GAWTC 4 cut(s) 12, 192, 550, 640
PflFI GACNNNGTC 1 cut(s) 302
PflMI CCANNNNNTGG 1 cut(s) 125
PfoI TCCNGGA 1 cut(s) 440
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 4 cut(s) 148, 605, 619, 667
PpsI GAGTC 4 cut(s) 148, 605, 619, 667
Ppu21I YACGTR 1 cut(s) 610
PscI ACATGT 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 492
PspGI CCWGG 1 cut(s) 492
PspPI GGNCC 2 cut(s) 412, 490
PsyI GACNNNGTC 1 cut(s) 302
SapI GCTCTTC 1 cut(s) 498
SaqAI TTAA 3 cut(s) 372, 408, 603
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 221
Sau96I GGNCC 2 cut(s) 412, 490
SchI GAGTC 4 cut(s) 149, 606, 619, 668
ScrFI CCNGG 3 cut(s) 69, 442, 494
SduI GDGCHC 1 cut(s) 76
SetI ASST 9 cut(s) 34, 79, 258, 277, 295, 331, 495, 534, 612
SfaNI GCATC 3 cut(s) 139, 348, 445
SfuI TTCGAA 1 cut(s) 316
SinI GGWCC 2 cut(s) 412, 490
SmlI CTYRAG 1 cut(s) 627
SmoI CTYRAG 1 cut(s) 627
SnaBI TACGTA 1 cut(s) 610
Sse9I AATT 4 cut(s) 240, 445, 509, 617
SsiI CCGC 2 cut(s) 323, 476
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 3 cut(s) 67, 440, 492
StyI CCWWGG 2 cut(s) 32, 156
TaiI ACGT 1 cut(s) 612
TaqI TCGA 5 cut(s) 15, 90, 220, 316, 668
TaqII GACCGA 1 cut(s) 76
TasI AATT 4 cut(s) 240, 445, 509, 617
TfiI GAWTC 4 cut(s) 12, 192, 550, 640
Tru1I TTAA 3 cut(s) 372, 408, 603
Tru9I TTAA 3 cut(s) 372, 408, 603
TscAI CASTG 1 cut(s) 218
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 184, 482
TspGWI ACGGA 1 cut(s) 584
TspRI CASTG 1 cut(s) 218
Tth111I GACNNNGTC 1 cut(s) 302
Van91I CCANNNNNTGG 1 cut(s) 125
VpaK11BI GGWCC 2 cut(s) 412, 490
XagI CCTNNNNNAGG 1 cut(s) 333
XapI RAATTY 3 cut(s) 240, 445, 617
XceI RCATGY 1 cut(s) 230
XmnI GAANNNNTTC 2 cut(s) 244, 639
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.