Poly(A)-specific ribonuclease PARN-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G25430 AT3G25430 |
| fragaria_vesca | FvH4_2g17670 |
| malus_domestica | MD05G1157500.v1.1 MD05G1157600.v1.1 MD05G1157900.v1.1 MD10G1150600.v1.1 |
| prunus_persica | Prupe.8G189300_v2.0.a1 Prupe.8G189300_v2.0.a1 |
| pyrus_communis | pycom05g14970 pycom05g14990 pycom10g12970 |
| rosa_chinensis | RchiOBHm_Chr6g0282651 |
| rosa_laevigata | RLG00000012877 |
| rosa_multiflora | Rmu_sc0003070.1_g000010 |
| rosa_roxburghii | Rroxscaffold_7G00186140 |
| rosa_rugosa | Rorug06G0148300 |
| rosa_samantha | Rh6AG261700 Rh6BG264800 Rh6CG263900 Rh6DG256100 |
| rosa_wichuraiana | Rw6G022620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 255 |
| AclWI | GGATC | 2 cut(s) | 218, 231 |
| AcsI | RAATTY | 3 cut(s) | 93, 183, 267 |
| AfaI | GTAC | 1 cut(s) | 242 |
| AgsI | TTSAA | 1 cut(s) | 61 |
| AluBI | AGCT | 2 cut(s) | 47, 166 |
| AluI | AGCT | 2 cut(s) | 47, 166 |
| AlwI | GGATC | 2 cut(s) | 218, 231 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 308 |
| AoxI | GGCC | 2 cut(s) | 13, 273 |
| ApeKI | GCWGC | 1 cut(s) | 44 |
| ApoI | RAATTY | 3 cut(s) | 93, 183, 267 |
| AspS9I | GGNCC | 2 cut(s) | 14, 274 |
| BamHI | GGATCC | 1 cut(s) | 223 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 134, 166 |
| BbvI | GCAGC | 1 cut(s) | 56 |
| BisI | GCNGC | 1 cut(s) | 45 |
| BlsI | GCNGC | 1 cut(s) | 46 |
| BmgT120I | GGNCC | 2 cut(s) | 14, 274 |
| BmiI | GGNNCC | 2 cut(s) | 225, 276 |
| BpuEI | CTTGAG | 1 cut(s) | 87 |
| BseGI | GGATG | 1 cut(s) | 303 |
| BseXI | GCAGC | 1 cut(s) | 56 |
| BshFI | GGCC | 2 cut(s) | 15, 275 |
| BsiSI | CCGG | 1 cut(s) | 272 |
| BsnI | GGCC | 2 cut(s) | 15, 275 |
| Bsp143I | GATC | 1 cut(s) | 223 |
| BspACI | CCGC | 1 cut(s) | 255 |
| BspANI | GGCC | 2 cut(s) | 15, 275 |
| BspLI | GGNNCC | 2 cut(s) | 225, 276 |
| BspPI | GGATC | 2 cut(s) | 218, 231 |
| BssMI | GATC | 1 cut(s) | 223 |
| Bst4CI | ACNGT | 1 cut(s) | 219 |
| Bst6I | CTCTTC | 1 cut(s) | 231 |
| BstDEI | CTNAG | 1 cut(s) | 20 |
| BstF5I | GGATG | 1 cut(s) | 303 |
| BstKTI | GATC | 1 cut(s) | 226 |
| BstMBI | GATC | 1 cut(s) | 223 |
| BstV1I | GCAGC | 1 cut(s) | 56 |
| BstX2I | RGATCY | 1 cut(s) | 223 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 88 |
| BstYI | RGATCY | 1 cut(s) | 223 |
| BsuRI | GGCC | 2 cut(s) | 15, 275 |
| BtsCI | GGATG | 1 cut(s) | 303 |
| BtsIMutI | CAGTG | 1 cut(s) | 215 |
| CaiI | CAGNNNCTG | 1 cut(s) | 308 |
| Cfr13I | GGNCC | 2 cut(s) | 14, 274 |
| Csp6I | GTAC | 1 cut(s) | 241 |
| CviAII | CATG | 1 cut(s) | 41 |
| CviJI | RGCY | 5 cut(s) | 15, 47, 166, 230, 275 |
| CviKI_1 | RGCY | 5 cut(s) | 15, 47, 166, 230, 275 |
| CviQI | GTAC | 1 cut(s) | 241 |
| DdeI | CTNAG | 1 cut(s) | 20 |
| DpnI | GATC | 1 cut(s) | 225 |
| DpnII | GATC | 1 cut(s) | 223 |
| Eam1104I | CTCTTC | 1 cut(s) | 231 |
| EarI | CTCTTC | 1 cut(s) | 231 |
| EciI | GGCGGA | 1 cut(s) | 244 |
| FaeI | CATG | 1 cut(s) | 44 |
| FaiI | YATR | 7 cut(s) | 42, 55, 89, 126, 200, 249, 322 |
| FatI | CATG | 1 cut(s) | 40 |
| Fnu4HI | GCNGC | 1 cut(s) | 45 |
| FokI | GGATG | 1 cut(s) | 310 |
| Fsp4HI | GCNGC | 1 cut(s) | 45 |
| GluI | GCNGC | 1 cut(s) | 45 |
| HaeIII | GGCC | 2 cut(s) | 15, 275 |
| HapII | CCGG | 1 cut(s) | 272 |
| Hin1II | CATG | 1 cut(s) | 44 |
| HinfI | GANTC | 2 cut(s) | 283, 305 |
| HpaII | CCGG | 1 cut(s) | 272 |
| Hpy188I | TCNGA | 4 cut(s) | 180, 190, 265, 304 |
| Hpy188III | TCNNGA | 2 cut(s) | 104, 309 |
| HpyAV | CCTTC | 1 cut(s) | 107 |
| HpyCH4III | ACNGT | 1 cut(s) | 219 |
| HpyCH4V | TGCA | 4 cut(s) | 44, 77, 161, 215 |
| HpyF3I | CTNAG | 1 cut(s) | 20 |
| Hsp92II | CATG | 1 cut(s) | 44 |
| Kzo9I | GATC | 1 cut(s) | 223 |
| LmnI | GCTCC | 1 cut(s) | 176 |
| LpnPI | CCDG | 3 cut(s) | 240, 285, 294 |
| Lsp1109I | GCAGC | 1 cut(s) | 56 |
| MalI | GATC | 1 cut(s) | 225 |
| MboI | GATC | 1 cut(s) | 223 |
| MboII | GAAGA | 3 cut(s) | 16, 154, 248 |
| MflI | RGATCY | 1 cut(s) | 223 |
| MluCI | AATT | 3 cut(s) | 93, 183, 267 |
| MlyI | GAGTC | 1 cut(s) | 314 |
| MmeI | TCCRAC | 1 cut(s) | 201 |
| MnlI | CCTC | 4 cut(s) | 27, 111, 242, 288 |
| MslI | CAYNNNNRTG | 1 cut(s) | 86 |
| MspI | CCGG | 1 cut(s) | 272 |
| NdeII | GATC | 1 cut(s) | 223 |
| NlaIII | CATG | 1 cut(s) | 44 |
| NlaIV | GGNNCC | 2 cut(s) | 225, 276 |
| PfeI | GAWTC | 1 cut(s) | 283 |
| PkrI | GCNGC | 1 cut(s) | 46 |
| PleI | GAGTC | 1 cut(s) | 313 |
| PpsI | GAGTC | 1 cut(s) | 313 |
| PspN4I | GGNNCC | 2 cut(s) | 225, 276 |
| PspPI | GGNCC | 2 cut(s) | 14, 274 |
| PstNI | CAGNNNCTG | 1 cut(s) | 308 |
| PsuI | RGATCY | 1 cut(s) | 223 |
| RsaI | GTAC | 1 cut(s) | 242 |
| RsaNI | GTAC | 1 cut(s) | 241 |
| RseI | CAYNNNNRTG | 1 cut(s) | 86 |
| SatI | GCNGC | 1 cut(s) | 45 |
| Sau3AI | GATC | 1 cut(s) | 223 |
| Sau96I | GGNCC | 2 cut(s) | 14, 274 |
| SchI | GAGTC | 1 cut(s) | 314 |
| SetI | ASST | 2 cut(s) | 49, 168 |
| SgeI | CNNG | 7 cut(s) | 53, 70, 116, 239, 245, 284, 292 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 86 |
| SmlI | CTYRAG | 1 cut(s) | 102 |
| SmoI | CTYRAG | 1 cut(s) | 102 |
| Sse9I | AATT | 3 cut(s) | 93, 183, 267 |
| SsiI | CCGC | 1 cut(s) | 255 |
| SspI | AATATT | 1 cut(s) | 37 |
| TaaI | ACNGT | 1 cut(s) | 219 |
| TaqI | TCGA | 1 cut(s) | 234 |
| TasI | AATT | 3 cut(s) | 93, 183, 267 |
| TatI | WGTACW | 1 cut(s) | 240 |
| TfiI | GAWTC | 1 cut(s) | 283 |
| TscAI | CASTG | 1 cut(s) | 222 |
| TseI | GCWGC | 1 cut(s) | 44 |
| TspDTI | ATGAA | 5 cut(s) | 17, 29, 42, 113, 126 |
| TspRI | CASTG | 1 cut(s) | 222 |
| XapI | RAATTY | 3 cut(s) | 93, 183, 267 |