Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0013247

Physical Location & Seq

Genomic Coordinates Forward (+)

16788746 .. 16793219

Gene Structure 4474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGTACCTCCAAATATGCAGCAGTGTGTTGGACATTATCAAATCACATACAGAACCTTCTGAGTTTGCGGTAGCACCTCCAGGGACCTCTGAAACTTCTCCACCAAGAGGATCGATGAGCCAGAAGCCTGGACCACCGGATACACTACTCTCGTTGAAGAAAAACAAGTTGCAAACAAAAATCCAATTTAAAAGAAGTCACAACAAGTCTTTGCATTCTCAGACCCCCCTATGCGAAACGTCTCCGACTCCCTCTGAGCCTTTGAGGGTTTGCCTTTGCCTCTCTTCGTCTTCGTCTCCCTCCATTTCGCGCTTTCGCCCAGAAACTTCTCGAACTCTCCTCTTTCCCCTCCATTTCCTCTCTCCGCTGCCAAAACGTCGATTCGCCGCGCCCGCATTCGCTGAAAACACCATAAGAAACAATCAATTTGGGAAGAGGAAGGGGAGGACTGATATGGCGCCGAGTCTCGCATTGTCGACGGCAGAGAAACTCAGGAAGGACGGCAACACTTACTTCAAGAAAGATCGATTCGCGGCCGCCATCGATGCCTATACTGAGGTATTATTTTGTTTCTGCGATTCGCTCCTCTCTGATTGGACAAAAGTCGAAGAGGATTCTCGGAAAGCTATTCAGCTTGATCACAATTCAGTTAAGGGTAACTATATGCTGGGGCTTGCTTTACTGCAGAAGCAAGAGTATGCTGAGGGAGTTAAGGCACTTGAGAGGGCTTTGGATCTTGGGAGGGGTGCTAATCCGGAAGGTTATATGGTAGAGGAAATCTGGCAGGAGCTTTCAAAAGCAAAGTACATGGAGTGGGAGGATACATCGAGCAAACGATCATGGGAATTGCAAAACTTGAAAGAAGACTGTGAGACTGCTCTCAAAGAGAAACATGACGCTCTTCAAGTTGAAGGGTTTTTGGATGAAGTTGCTACTACCTATATGAAACAGTTAGAGGCGTTAGGAAGAGTGTTTGAGAAAGCTGCAGAAGCTGACACGCCAAGTGAGGTGCCGGATTACCTGTGTTGCAAAATCACGCTTGATATATTTCGTGATCCTGTGATTACTCCAAGTGGGGTCACATATGAGAGATCAGTGATCCGTCACCATCTTGAGAAGGTTGGCAAGTTCGATCCAATCACACGAGAGCCACTTGATCAATCAGAGCTAATACCAAACTTTGCCATAAAAGAAGCAGTTCAAGCATATATACAACAGCATGGTTGGGCCTACGGAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051087 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_11 TPR_2 TPR_8 U-box

Protein Analysis

414

Amino Acids

46.57

Weight (kDa)

6.54

Isoelectric Point (pI)

53.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	337 - 409	1.5e-28	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07370
fragaria_vesca	FvH4_2g18060 FvH4_2g18060
malus_domestica	MD05G1165100.v1.1 MD10G1154400.v1.1
prunus_persica	Prupe.8G193300_v2.0.a1
pyrus_communis	pycom05g15370 pycom10g13350
rosa_chinensis	RchiOBHm_Chr6g0283451
rosa_laevigata	RLG00000012825
rosa_multiflora	Rmu_sc0004959.1_g000017
rosa_roxburghii	Rroxscaffold_7G00185530
rosa_rugosa	Rorug06G0154300
rosa_samantha	Rh6AG266600 Rh6BG269100 Rh6CG269000 Rh6DG262400
rosa_wichuraiana	Rw6G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	457, 1009
AccI	GTMKAC	1 cut(s)	476
AccII	CGCG	3 cut(s)	310, 389, 533
AccIII	TCCGGA	1 cut(s)	754
AciI	CCGC	6 cut(s)	68, 365, 387, 393, 533, 537
AclWI	GGATC	5 cut(s)	118, 741, 1049, 1093, 1127
AcoI	YGGCCR	1 cut(s)	534
AcyI	GRCGYC	1 cut(s)	458
AfaI	GTAC	2 cut(s)	5, 806
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	7 cut(s)	157, 517, 795, 859, 905, 911, 1202
AjnI	CCWGG	2 cut(s)	79, 127
AluBI	AGCT	6 cut(s)	626, 634, 790, 983, 992, 1168
AluI	AGCT	6 cut(s)	626, 634, 790, 983, 992, 1168
Alw26I	GTCTC	4 cut(s)	246, 300, 470, 866
AlwI	GGATC	5 cut(s)	118, 741, 1049, 1093, 1127
AlwNI	CAGNNNCTG	1 cut(s)	992
Aor13HI	TCCGGA	1 cut(s)	754
AoxI	GGCC	2 cut(s)	534, 1227
ApeKI	GCWGC	3 cut(s)	18, 367, 983
Asp700I	GAANNNNTTC	1 cut(s)	1197
AspLEI	GCGC	3 cut(s)	312, 391, 460
AspS9I	GGNCC	3 cut(s)	84, 131, 1227
AsuHPI	GGTGA	1 cut(s)	1097
AvaII	GGWCC	2 cut(s)	84, 131
BanI	GGYRCC	2 cut(s)	457, 1009
BauI	CACGAG	1 cut(s)	1143
BbsI	GAAGAC	2 cut(s)	282, 870
BbvCI	CCTCAGC	1 cut(s)	702
BbvI	GCAGC	3 cut(s)	30, 354, 970
BccI	CCATC	2 cut(s)	548, 1116
BceAI	ACGGC	2 cut(s)	495, 517
BciT130I	CCWGG	2 cut(s)	81, 129
BciVI	GTATCC	2 cut(s)	133, 814
BclI	TGATCA	2 cut(s)	637, 1156
BcoDI	GTCTC	4 cut(s)	246, 300, 470, 866
BfmI	CTRYAG	2 cut(s)	683, 984
BfoI	RGCGCY	1 cut(s)	461
BfuI	GTATCC	2 cut(s)	133, 814
BisI	GCNGC	6 cut(s)	19, 368, 387, 534, 537, 984
BlsI	GCNGC	6 cut(s)	20, 369, 388, 535, 538, 985
Bme1390I	CCNGG	2 cut(s)	81, 129
Bme18I	GGWCC	2 cut(s)	84, 131
BmgT120I	GGNCC	3 cut(s)	84, 131, 1227
BmiI	GGNNCC	3 cut(s)	85, 459, 1011
BmrFI	CCNGG	2 cut(s)	81, 129
BmsI	GCATC	1 cut(s)	535
BoxI	GACNNNNGTC	1 cut(s)	602
BpiI	GAAGAC	2 cut(s)	282, 870
BpmI	CTGGAG	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	2 cut(s)	740, 1133
Bsa29I	ATCGAT	3 cut(s)	113, 526, 543
BsaHI	GRCGYC	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	80
BsaWI	WCCGGW	2 cut(s)	136, 754
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
BseAI	TCCGGA	1 cut(s)	754
BseBI	CCWGG	2 cut(s)	81, 129
BseCI	ATCGAT	3 cut(s)	113, 526, 543
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	928
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMII	CTCAG	6 cut(s)	51, 233, 246, 505, 546, 693
BseRI	GAGGAG	2 cut(s)	329, 575
BseX3I	CGGCCG	1 cut(s)	534
BseXI	GCAGC	3 cut(s)	30, 354, 970
BseYI	CCCAGC	1 cut(s)	667
Bsh1236I	CGCG	3 cut(s)	310, 389, 533
Bsh1285I	CGRYCG	1 cut(s)	537
BshFI	GGCC	2 cut(s)	536, 1229
BshNI	GGYRCC	2 cut(s)	457, 1009
BshVI	ATCGAT	3 cut(s)	113, 526, 543
BsiEI	CGRYCG	1 cut(s)	537
BsiSI	CCGG	3 cut(s)	137, 755, 1013
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	4 cut(s)	246, 300, 470, 866
BsmBI	CGTCTC	2 cut(s)	246, 300
BsmFI	GGGAC	1 cut(s)	97
BsmI	GAATGC	2 cut(s)	214, 395
BsnI	GGCC	2 cut(s)	536, 1229
Bsp13I	TCCGGA	1 cut(s)	754
BspACI	CCGC	6 cut(s)	68, 365, 387, 393, 533, 537
BspANI	GGCC	2 cut(s)	536, 1229
BspCNI	CTCAG	6 cut(s)	52, 232, 247, 504, 547, 694
BspDI	ATCGAT	3 cut(s)	113, 526, 543
BspEI	TCCGGA	1 cut(s)	754
BspFNI	CGCG	3 cut(s)	310, 389, 533
BspLI	GGNNCC	3 cut(s)	85, 459, 1011
BspMAI	CTGCAG	2 cut(s)	687, 988
BspPI	GGATC	5 cut(s)	118, 741, 1049, 1093, 1127
BspQI	GCTCTTC	1 cut(s)	906
BspT107I	GGYRCC	2 cut(s)	457, 1009
BssECI	CCNNGG	1 cut(s)	80
BssNI	GRCGYC	1 cut(s)	458
BssSI	CACGAG	1 cut(s)	1143
Bst2BI	CACGAG	1 cut(s)	1143
Bst2UI	CCWGG	2 cut(s)	81, 129
Bst4CI	ACNGT	2 cut(s)	869, 951
Bst6I	CTCTTC	5 cut(s)	289, 428, 603, 906, 961
BstACI	GRCGYC	1 cut(s)	458
BstC8I	GCNNGC	2 cut(s)	393, 675
BstDEI	CTNAG	6 cut(s)	60, 219, 255, 491, 555, 702
BstF5I	GGATG	1 cut(s)	928
BstFNI	CGCG	3 cut(s)	310, 389, 533
BstH2I	RGCGCY	1 cut(s)	461
BstHHI	GCGC	3 cut(s)	312, 391, 460
BstMAI	GTCTC	4 cut(s)	246, 300, 470, 866
BstMCI	CGRYCG	1 cut(s)	537
BstMWI	GCNNNNNNNGC	4 cut(s)	392, 545, 989, 1202
BstNI	CCWGG	2 cut(s)	81, 129
BstPAI	GACNNNNGTC	1 cut(s)	602
BstSCI	CCNGG	2 cut(s)	79, 127
BstSFI	CTRYAG	2 cut(s)	683, 984
BstUI	CGCG	3 cut(s)	310, 389, 533
BstV1I	GCAGC	3 cut(s)	30, 354, 970
BstV2I	GAAGAC	2 cut(s)	282, 870
BstX2I	RGATCY	1 cut(s)	733
BstXI	CCANNNNNNTGG	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	733
BstZI	CGGCCG	1 cut(s)	534
Bsu15I	ATCGAT	3 cut(s)	113, 526, 543
BsuI	GTATCC	2 cut(s)	133, 814
BsuRI	GGCC	2 cut(s)	536, 1229
BsuTUI	ATCGAT	3 cut(s)	113, 526, 543
BtsCI	GGATG	1 cut(s)	928
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	2 cut(s)	28, 1101
Cac8I	GCNNGC	2 cut(s)	393, 675
CaiI	CAGNNNCTG	1 cut(s)	992
CciNI	GCGGCCGC	1 cut(s)	534
CfoI	GCGC	3 cut(s)	312, 391, 460
Cfr13I	GGNCC	3 cut(s)	84, 131, 1227
ClaI	ATCGAT	3 cut(s)	113, 526, 543
CseI	GACGC	1 cut(s)	905
Csp6I	GTAC	2 cut(s)	4, 805
CviAII	CATG	4 cut(s)	808, 840, 893, 1220
CviQI	GTAC	2 cut(s)	4, 805
DdeI	CTNAG	6 cut(s)	60, 219, 255, 491, 555, 702
DinI	GGCGCC	1 cut(s)	459
DraI	TTTAAA	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	534
EagI	CGGCCG	1 cut(s)	534
Eam1104I	CTCTTC	5 cut(s)	289, 428, 603, 906, 961
EarI	CTCTTC	5 cut(s)	289, 428, 603, 906, 961
EclXI	CGGCCG	1 cut(s)	534
Eco47I	GGWCC	2 cut(s)	84, 131
Eco52I	CGGCCG	1 cut(s)	534
EcoO109I	RGGNCCY	1 cut(s)	84
EcoRII	CCWGG	2 cut(s)	79, 127
EgeI	GGCGCC	1 cut(s)	459
EheI	GGCGCC	1 cut(s)	459
Esp3I	CGTCTC	2 cut(s)	246, 300
FaeI	CATG	4 cut(s)	811, 843, 896, 1223
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	4 cut(s)	807, 839, 892, 1219
FauI	CCCGC	1 cut(s)	400
FauNDI	CATATG	1 cut(s)	1084
FbaI	TGATCA	2 cut(s)	637, 1156
FblI	GTMKAC	1 cut(s)	476
Fnu4HI	GCNGC	6 cut(s)	19, 368, 387, 534, 537, 984
FokI	GGATG	1 cut(s)	935
Fsp4HI	GCNGC	6 cut(s)	19, 368, 387, 534, 537, 984
GlaI	GCGC	3 cut(s)	311, 390, 459
GluI	GCNGC	6 cut(s)	19, 368, 387, 534, 537, 984
GsaI	CCCAGC	1 cut(s)	671
GsuI	CTGGAG	1 cut(s)	63
HaeII	RGCGCY	1 cut(s)	461
HaeIII	GGCC	2 cut(s)	536, 1229
HapII	CCGG	3 cut(s)	137, 755, 1013
HgaI	GACGC	1 cut(s)	905
HhaI	GCGC	3 cut(s)	312, 391, 460
Hin1I	GRCGYC	1 cut(s)	458
Hin1II	CATG	4 cut(s)	811, 843, 896, 1223
Hin6I	GCGC	3 cut(s)	310, 389, 458
HinP1I	GCGC	3 cut(s)	310, 389, 458
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HinfI	GANTC	6 cut(s)	247, 381, 463, 528, 578, 614
HpaII	CCGG	3 cut(s)	137, 755, 1013
HphI	GGTGA	1 cut(s)	1097
Hpy166II	GTNNAC	1 cut(s)	477
Hpy188I	TCNGA	8 cut(s)	61, 91, 222, 246, 256, 592, 621, 1165
Hpy188III	TCNNGA	6 cut(s)	330, 493, 517, 755, 1052, 1112
Hpy8I	GTNNAC	1 cut(s)	477
Hpy99I	CGWCG	2 cut(s)	381, 481
HpyAV	CCTTC	6 cut(s)	66, 433, 490, 752, 905, 1111
HpyCH4III	ACNGT	2 cut(s)	869, 951
HpyCH4IV	ACGT	2 cut(s)	239, 376
HpyCH4V	TGCA	7 cut(s)	18, 172, 214, 685, 850, 986, 1029
HpyF10VI	GCNNNNNNNGC	4 cut(s)	392, 545, 989, 1202
HpyF3I	CTNAG	6 cut(s)	60, 219, 255, 491, 555, 702
HpySE526I	ACGT	2 cut(s)	239, 376
Hsp92I	GRCGYC	1 cut(s)	458
Hsp92II	CATG	4 cut(s)	811, 843, 896, 1223
HspAI	GCGC	3 cut(s)	310, 389, 458
KasI	GGCGCC	1 cut(s)	457
Kpn2I	TCCGGA	1 cut(s)	754
Ksp22I	TGATCA	2 cut(s)	637, 1156
LguI	GCTCTTC	1 cut(s)	906
LmnI	GCTCC	2 cut(s)	588, 787
Lsp1109I	GCAGC	3 cut(s)	30, 354, 970
LweI	GCATC	1 cut(s)	535
MaeII	ACGT	2 cut(s)	239, 376
MaeIII	GTNAC	4 cut(s)	197, 656, 1078, 1103
MboII	GAAGA	8 cut(s)	169, 276, 282, 445, 620, 875, 893, 978
MflI	RGATCY	1 cut(s)	733
MluCI	AATT	4 cut(s)	185, 425, 643, 845
Mly113I	GGCGCC	1 cut(s)	458
MlyI	GAGTC	2 cut(s)	241, 472
MmeI	TCCRAC	2 cut(s)	9, 269
MroI	TCCGGA	1 cut(s)	754
MroXI	GAANNNNTTC	1 cut(s)	1197
MseI	TTAA	3 cut(s)	189, 651, 711
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	3 cut(s)	137, 755, 1013
MspR9I	CCNGG	2 cut(s)	81, 129
Mva1269I	GAATGC	2 cut(s)	214, 395
MvaI	CCWGG	2 cut(s)	81, 129
MvnI	CGCG	3 cut(s)	310, 389, 533
MwoI	GCNNNNNNNGC	4 cut(s)	392, 545, 989, 1202
NarI	GGCGCC	1 cut(s)	458
NdeI	CATATG	1 cut(s)	1084
NlaIII	CATG	4 cut(s)	811, 843, 896, 1223
NlaIV	GGNNCC	3 cut(s)	85, 459, 1011
NmeAIII	GCCGAG	1 cut(s)	486
NmuCI	GTSAC	3 cut(s)	197, 1078, 1103
NotI	GCGGCCGC	1 cut(s)	534
PciSI	GCTCTTC	1 cut(s)	906
PctI	GAATGC	2 cut(s)	214, 395
PdmI	GAANNNNTTC	1 cut(s)	1197
PfeI	GAWTC	4 cut(s)	381, 528, 578, 614
PkrI	GCNGC	6 cut(s)	20, 369, 388, 535, 538, 985
PleI	GAGTC	2 cut(s)	241, 471
PluTI	GGCGCC	1 cut(s)	461
PpsI	GAGTC	2 cut(s)	241, 471
PpuMI	RGGWCCY	1 cut(s)	84
PshAI	GACNNNNGTC	1 cut(s)	602
Psp5II	RGGWCCY	1 cut(s)	84
Psp6I	CCWGG	2 cut(s)	79, 127
PspFI	CCCAGC	1 cut(s)	667
PspGI	CCWGG	2 cut(s)	79, 127
PspN4I	GGNNCC	3 cut(s)	85, 459, 1011
PspPI	GGNCC	3 cut(s)	84, 131, 1227
PspPPI	RGGWCCY	1 cut(s)	84
PstI	CTGCAG	2 cut(s)	687, 988
PstNI	CAGNNNCTG	1 cut(s)	992
PsuI	RGATCY	1 cut(s)	733
RsaI	GTAC	2 cut(s)	5, 806
RsaNI	GTAC	2 cut(s)	4, 805
SalI	GTCGAC	1 cut(s)	475
SapI	GCTCTTC	1 cut(s)	906
SaqAI	TTAA	3 cut(s)	189, 651, 711
SatI	GCNGC	6 cut(s)	19, 368, 387, 534, 537, 984
Sau96I	GGNCC	3 cut(s)	84, 131, 1227
SchI	GAGTC	2 cut(s)	241, 472
ScrFI	CCNGG	2 cut(s)	81, 129
SfaNI	GCATC	1 cut(s)	535
SfcI	CTRYAG	2 cut(s)	683, 984
SfoI	GGCGCC	1 cut(s)	459
SinI	GGWCC	2 cut(s)	84, 131
SmlI	CTYRAG	2 cut(s)	719, 1112
SmoI	CTYRAG	2 cut(s)	719, 1112
Sse9I	AATT	4 cut(s)	185, 425, 643, 845
SsiI	CCGC	6 cut(s)	68, 365, 387, 393, 533, 537
SspDI	GGCGCC	1 cut(s)	457
StyD4I	CCNGG	2 cut(s)	79, 127
TaaI	ACNGT	2 cut(s)	869, 951
TaiI	ACGT	2 cut(s)	242, 379
TaqI	TCGA	9 cut(s)	113, 331, 379, 476, 526, 543, 606, 827, 1131
TasI	AATT	4 cut(s)	185, 425, 643, 845
TatI	WGTACW	1 cut(s)	804
TauI	GCSGC	3 cut(s)	389, 536, 539
TfiI	GAWTC	4 cut(s)	381, 528, 578, 614
Tru1I	TTAA	3 cut(s)	189, 651, 711
Tru9I	TTAA	3 cut(s)	189, 651, 711
TscAI	CASTG	2 cut(s)	28, 1101
TseFI	GTSAC	3 cut(s)	197, 1078, 1103
TseI	GCWGC	3 cut(s)	18, 367, 983
Tsp45I	GTSAC	3 cut(s)	197, 1078, 1103
TspDTI	ATGAA	2 cut(s)	939, 959
TspGWI	ACGGA	1 cut(s)	1091
TspRI	CASTG	2 cut(s)	28, 1101
VpaK11BI	GGWCC	2 cut(s)	84, 131
XmiI	GTMKAC	1 cut(s)	476
XmnI	GAANNNNTTC	1 cut(s)	1197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.