pycom10g15900

protein import into mitochondrial matrix

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0014249
Physical Location & Seq
Forward (+)
19076142 .. 19077417
1276 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g15900.1

Sequence Viewer

Length: 462 bp
ATGAAGCAAATCTTAGTTCAACTGAGTCAACTCGTTCTTCTTCTTCTGCTACTTGTTGCCTGCTCTGTTCCCGCAACAACAGCCAGAAACCAACGGCCAGGATTTCTCTTCACAAGAACAACAGGAAGATGCACTCCTCAGTACTGGGGGAGCAGGAGGGAGGCGTGGCCGAAGATGGTCCCACAGACATCGACGGTGTCCAAGGTGTTTGGATCAAGAGCGTACGAACGGTACAGATCCGATCTGACGTTGCTTGAAGCGACGGCGGTGAATGACGAGGAGAACGTGTACCCTAGGCTGCTGAAGCAGGCGAGTGCAGCACTGCTGAACTCTTATGCAAGAAAAGGGTATCCTTACACAGCTTGGGAGGTCAAGACTTTGTTGATCCAAGCTTTGGTGTCTAAGAAGGCAGCTGCCCTTCAAGCCCAGCACTTCTCTAATGCCAATGAGGCATGTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.18

Weight (kDa)

9.86

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20515
fragaria_vesca FvH4_2g21450
malus_domestica MD05G1197000.v1.1
prunus_persica Prupe.8G223500_v2.0.a1
pyrus_communis pycom10g15900
rosa_chinensis RchiOBHm_Chr6g0288091
rosa_laevigata RLG00000012440
rosa_multiflora Rmu_co7961866.1_g000001 Rmu_sc0001117.1_g000002 Rmu_sc0010766.1_g000001
rosa_roxburghii Rroxscaffold_7G00180520
rosa_rugosa Rorug06G0194200
rosa_samantha Rh6AG304300 Rh6BG310300 Rh6CG318300 Rh6DG303200
rosa_wichuraiana Rw6G026330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 394
AciI CCGC 2 cut(s) 72, 266
AclWI GGATC 3 cut(s) 220, 231, 379
AcoI YGGCCR 2 cut(s) 95, 167
AcuI CTGAAG 1 cut(s) 323
AfaI GTAC 4 cut(s) 143, 224, 233, 290
AfiI CCNNNNNNNGG 1 cut(s) 394
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 3 cut(s) 20, 257, 422
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 3 cut(s) 362, 392, 413
AluI AGCT 3 cut(s) 362, 392, 413
AlwI GGATC 3 cut(s) 220, 231, 379
AoxI GGCC 2 cut(s) 95, 167
ApeKI GCWGC 4 cut(s) 298, 317, 410, 413
AspA2I CCTAGG 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 280
AvaII GGWCC 1 cut(s) 178
AvrII CCTAGG 1 cut(s) 293
BbvI GCAGC 4 cut(s) 285, 329, 400, 422
BccI CCATC 1 cut(s) 169
BceAI ACGGC 2 cut(s) 110, 279
BciT130I CCWGG 1 cut(s) 99
BciVI GTATCC 1 cut(s) 360
BfaI CTAG 1 cut(s) 294
BfuI GTATCC 1 cut(s) 360
BglI GCCNNNNNGGC 1 cut(s) 449
BisI GCNGC 4 cut(s) 299, 318, 411, 414
BlnI CCTAGG 1 cut(s) 293
BlsI GCNGC 4 cut(s) 300, 319, 412, 415
BmcAI AGTACT 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 99
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 119
BmuI ACTGGG 1 cut(s) 154
BsaJI CCNNGG 2 cut(s) 201, 293
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse1I ACTGG 1 cut(s) 149
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 201, 293
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMII CTCAG 2 cut(s) 14, 152
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 2 cut(s) 126, 293
BseXI GCAGC 4 cut(s) 285, 329, 400, 422
BseYI CCCAGC 1 cut(s) 426
BsgI GTGCAG 1 cut(s) 336
BshFI GGCC 2 cut(s) 97, 169
BsiWI CGTACG 1 cut(s) 222
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 394
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 2 cut(s) 97, 169
Bsp143I GATC 4 cut(s) 212, 236, 241, 384
BspACI CCGC 2 cut(s) 72, 266
BspANI GGCC 2 cut(s) 97, 169
BspCNI CTCAG 2 cut(s) 15, 151
BspLI GGNNCC 1 cut(s) 180
BspPI GGATC 3 cut(s) 220, 231, 379
BsrI ACTGG 1 cut(s) 149
BssECI CCNNGG 2 cut(s) 201, 293
BssMI GATC 4 cut(s) 212, 236, 241, 384
BssT1I CCWWGG 2 cut(s) 201, 293
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 2 cut(s) 196, 231
Bst6I CTCTTC 1 cut(s) 113
BstC8I GCNNGC 2 cut(s) 61, 309
BstDEI CTNAG 4 cut(s) 13, 23, 138, 402
BstKTI GATC 4 cut(s) 215, 239, 244, 387
BstMBI GATC 4 cut(s) 212, 236, 241, 384
BstMWI GCNNNNNNNGC 5 cut(s) 80, 304, 317, 422, 449
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 456
BstSCI CCNGG 1 cut(s) 97
BstV1I GCAGC 4 cut(s) 285, 329, 400, 422
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BsuI GTATCC 1 cut(s) 360
BsuRI GGCC 2 cut(s) 97, 169
BtsI GCAGTG 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 320
Cac8I GCNNGC 2 cut(s) 61, 309
Cfr13I GGNCC 1 cut(s) 178
Csp6I GTAC 4 cut(s) 142, 223, 232, 289
CviAII CATG 1 cut(s) 453
CviJI RGCY 8 cut(s) 83, 97, 169, 298, 362, 392, 413, 425
CviKI_1 RGCY 8 cut(s) 83, 97, 169, 298, 362, 392, 413, 425
CviQI GTAC 4 cut(s) 142, 223, 232, 289
DdeI CTNAG 4 cut(s) 13, 23, 138, 402
DpnI GATC 4 cut(s) 214, 238, 243, 386
DpnII GATC 4 cut(s) 212, 236, 241, 384
EaeI YGGCCR 2 cut(s) 95, 167
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco130I CCWWGG 2 cut(s) 201, 293
Eco47I GGWCC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 97
EcoT14I CCWWGG 2 cut(s) 201, 293
ErhI CCWWGG 2 cut(s) 201, 293
FaeI CATG 1 cut(s) 456
FaiI YATR 2 cut(s) 336, 454
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 1 cut(s) 164
FatI CATG 1 cut(s) 452
FauI CCCGC 1 cut(s) 79
Fnu4HI GCNGC 4 cut(s) 299, 318, 411, 414
Fsp4HI GCNGC 4 cut(s) 299, 318, 411, 414
FspBI CTAG 1 cut(s) 294
GluI GCNGC 4 cut(s) 299, 318, 411, 414
GsaI CCCAGC 1 cut(s) 430
HaeIII GGCC 2 cut(s) 97, 169
Hin1II CATG 1 cut(s) 456
HincII GTYRAC 1 cut(s) 29
HindII GTYRAC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 390
HinfI GANTC 1 cut(s) 25
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 2 cut(s) 29, 289
Hpy188I TCNGA 2 cut(s) 241, 246
Hpy188III TCNNGA 2 cut(s) 216, 373
Hpy8I GTNNAC 2 cut(s) 29, 289
Hpy99I CGWCG 2 cut(s) 196, 265
HpyAV CCTTC 2 cut(s) 400, 428
HpyCH4III ACNGT 2 cut(s) 196, 231
HpyCH4IV ACGT 2 cut(s) 248, 285
HpyCH4V TGCA 3 cut(s) 132, 317, 338
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 304, 317, 422, 449
HpyF3I CTNAG 4 cut(s) 13, 23, 138, 402
HpySE526I ACGT 2 cut(s) 248, 285
Hsp92II CATG 1 cut(s) 456
Kzo9I GATC 4 cut(s) 212, 236, 241, 384
LmnI GCTCC 1 cut(s) 150
LpnPI CCDG 9 cut(s) 73, 84, 97, 108, 111, 130, 139, 293, 440
Lsp1109I GCAGC 4 cut(s) 285, 329, 400, 422
LweI GCATC 1 cut(s) 119
MaeI CTAG 1 cut(s) 294
MaeII ACGT 2 cut(s) 248, 285
MalI GATC 4 cut(s) 214, 238, 243, 386
MboI GATC 4 cut(s) 212, 236, 241, 384
MboII GAAGA 6 cut(s) 29, 32, 35, 100, 138, 184
MflI RGATCY 1 cut(s) 236
MlyI GAGTC 1 cut(s) 34
MnlI CCTC 6 cut(s) 147, 150, 154, 271, 361, 442
MspA1I CMGCKG 1 cut(s) 413
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 5 cut(s) 80, 304, 317, 422, 449
NdeII GATC 4 cut(s) 212, 236, 241, 384
NlaIII CATG 1 cut(s) 456
NlaIV GGNNCC 1 cut(s) 180
NspI RCATGY 1 cut(s) 456
PcsI WCGNNNNNNNCGW 1 cut(s) 282
Pfl23II CGTACG 1 cut(s) 222
PflFI GACNNNGTC 1 cut(s) 196
PflMI CCANNNNNTGG 1 cut(s) 394
PkrI GCNGC 4 cut(s) 300, 319, 412, 415
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 97
PspFI CCCAGC 1 cut(s) 426
PspGI CCWGG 1 cut(s) 97
PspLI CGTACG 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 1 cut(s) 178
PsuI RGATCY 1 cut(s) 236
PsyI GACNNNGTC 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 413
RsaI GTAC 4 cut(s) 143, 224, 233, 290
RsaNI GTAC 4 cut(s) 142, 223, 232, 289
SatI GCNGC 4 cut(s) 299, 318, 411, 414
Sau3AI GATC 4 cut(s) 212, 236, 241, 384
Sau96I GGNCC 1 cut(s) 178
ScaI AGTACT 1 cut(s) 143
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 99
SetI ASST 7 cut(s) 207, 251, 288, 364, 372, 394, 415
SfaNI GCATC 1 cut(s) 119
SinI GGWCC 1 cut(s) 178
SsiI CCGC 2 cut(s) 72, 266
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 2 cut(s) 201, 293
TaaI ACNGT 2 cut(s) 196, 231
TaiI ACGT 2 cut(s) 251, 288
TaqI TCGA 1 cut(s) 191
TatI WGTACW 1 cut(s) 141
TscAI CASTG 1 cut(s) 327
TseI GCWGC 4 cut(s) 298, 317, 410, 413
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 327
Tth111I GACNNNGTC 1 cut(s) 196
Van91I CCANNNNNTGG 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 178
XceI RCATGY 1 cut(s) 456
XmaJI CCTAGG 1 cut(s) 293
XspI CTAG 1 cut(s) 294
ZrmI AGTACT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.