Rmu_co7961866.1_g000001

protein import into mitochondrial matrix

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7961866.1
OG0014249
Physical Location & Seq
Reverse (-)
91 .. 384
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7961866.1_g000001.1.cds

Sequence Viewer

Length: 294 bp
atggtcccgcagacatcgacggtgtccaaggtgttcgggtccagagcctacgaacggtacagatccgatctgacgctgctggaagcgacggcaaggagcgacgacgagaacgtcttccctaggctgctgaagcaggcgagcgcggcgctgctcaactcgtactccaggaaggggttcccgtacacggcgtgggaggtgaagactcgggtcatacagggcttggtgtccgagagggcggcgtcccgtcaggcccagctattctctcaggccaatgaggcttgtgatctgcactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.9

Weight (kDa)

9.3

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20515
fragaria_vesca FvH4_2g21450
malus_domestica MD05G1197000.v1.1
prunus_persica Prupe.8G223500_v2.0.a1
pyrus_communis pycom10g15900
rosa_chinensis RchiOBHm_Chr6g0288091
rosa_laevigata RLG00000012440
rosa_multiflora Rmu_co7961866.1_g000001 Rmu_sc0001117.1_g000002 Rmu_sc0010766.1_g000001
rosa_roxburghii Rroxscaffold_7G00180520
rosa_rugosa Rorug06G0194200
rosa_samantha Rh6AG304300 Rh6BG310300 Rh6CG318300 Rh6DG303200
rosa_wichuraiana Rw6G026330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AccII CGCG 1 cut(s) 143
AciI CCGC 3 cut(s) 8, 143, 236
AclWI GGATC 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 149
AcyI GRCGYC 1 cut(s) 239
AdeI CACNNNGTG 1 cut(s) 189
AfaI GTAC 3 cut(s) 59, 161, 182
AfiI CCNNNNNNNGG 3 cut(s) 54, 171, 184
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
AlwI GGATC 1 cut(s) 57
Ama87I CYCGRG 1 cut(s) 204
AoxI GGCC 2 cut(s) 249, 267
ApeKI GCWGC 3 cut(s) 76, 124, 148
Asp700I GAANNNNTTC 2 cut(s) 113, 173
AspA2I CCTAGG 1 cut(s) 119
AspLEI GCGC 2 cut(s) 143, 148
AspS9I GGNCC 3 cut(s) 4, 39, 250
AsuHPI GGTGA 1 cut(s) 208
AvaI CYCGRG 1 cut(s) 204
AvaII GGWCC 2 cut(s) 4, 39
AvrII CCTAGG 1 cut(s) 119
BbsI GAAGAC 2 cut(s) 106, 206
BbvI GCAGC 3 cut(s) 63, 111, 135
BceAI ACGGC 2 cut(s) 105, 201
BciT130I CCWGG 1 cut(s) 166
BfaI CTAG 2 cut(s) 120, 292
BfoI RGCGCY 1 cut(s) 149
BglI GCCNNNNNGGC 1 cut(s) 275
BisI GCNGC 5 cut(s) 77, 125, 144, 149, 237
BlnI CCTAGG 1 cut(s) 119
BlsI GCNGC 5 cut(s) 78, 126, 145, 150, 238
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 2 cut(s) 4, 39
BmeT110I CYCGRG 1 cut(s) 204
BmgT120I GGNCC 3 cut(s) 4, 39, 250
BmiI GGNNCC 3 cut(s) 6, 40, 176
BmrFI CCNGG 1 cut(s) 166
BoxI GACNNNNGTC 1 cut(s) 206
BpiI GAAGAC 2 cut(s) 106, 206
BpmI CTGGAG 1 cut(s) 148
BsaHI GRCGYC 1 cut(s) 239
BsaJI CCNNGG 2 cut(s) 27, 119
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 171, 184
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 2 cut(s) 27, 119
BseLI CCNNNNNNNGG 3 cut(s) 54, 171, 184
BseMII CTCAG 1 cut(s) 278
BseXI GCAGC 3 cut(s) 63, 111, 135
BseYI CCCAGC 1 cut(s) 252
BsgI GTGCAG 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 2 cut(s) 251, 269
BsiHKCI CYCGRG 1 cut(s) 204
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 3 cut(s) 54, 171, 184
BsmFI GGGAC 1 cut(s) 226
BsnI GGCC 2 cut(s) 251, 269
BsoBI CYCGRG 1 cut(s) 204
Bsp143I GATC 3 cut(s) 62, 67, 283
BspACI CCGC 3 cut(s) 8, 143, 236
BspANI GGCC 2 cut(s) 251, 269
BspCNI CTCAG 1 cut(s) 277
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 3 cut(s) 6, 40, 176
BspPI GGATC 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 27, 119
BssMI GATC 3 cut(s) 62, 67, 283
BssNI GRCGYC 1 cut(s) 239
BssT1I CCWWGG 2 cut(s) 27, 119
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 2 cut(s) 22, 57
BstACI GRCGYC 1 cut(s) 239
BstC8I GCNNGC 2 cut(s) 135, 139
BstDEI CTNAG 1 cut(s) 264
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 2 cut(s) 143, 148
BstKTI GATC 3 cut(s) 65, 70, 286
BstMBI GATC 3 cut(s) 62, 67, 283
BstMWI GCNNNNNNNGC 3 cut(s) 130, 143, 275
BstNI CCWGG 1 cut(s) 166
BstPAI GACNNNNGTC 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 164
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 3 cut(s) 63, 111, 135
BstV2I GAAGAC 2 cut(s) 106, 206
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BsuRI GGCC 2 cut(s) 251, 269
Cac8I GCNNGC 2 cut(s) 135, 139
CfoI GCGC 2 cut(s) 143, 148
Cfr13I GGNCC 3 cut(s) 4, 39, 250
CseI GACGC 2 cut(s) 82, 228
Csp6I GTAC 3 cut(s) 58, 160, 181
CviJI RGCY 7 cut(s) 47, 124, 219, 251, 256, 269, 278
CviKI_1 RGCY 7 cut(s) 47, 124, 219, 251, 256, 269, 278
CviQI GTAC 3 cut(s) 58, 160, 181
DdeI CTNAG 1 cut(s) 264
DpnI GATC 3 cut(s) 64, 69, 285
DpnII GATC 3 cut(s) 62, 67, 283
DraIII CACNNNGTG 1 cut(s) 189
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eco130I CCWWGG 2 cut(s) 27, 119
Eco47I GGWCC 2 cut(s) 4, 39
Eco57I CTGAAG 1 cut(s) 149
Eco88I CYCGRG 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 164
EcoT14I CCWWGG 2 cut(s) 27, 119
ErhI CCWWGG 2 cut(s) 27, 119
FaiI YATR 1 cut(s) 212
FaqI GGGAC 1 cut(s) 226
FauI CCCGC 1 cut(s) 15
Fnu4HI GCNGC 5 cut(s) 77, 125, 144, 149, 237
Fsp4HI GCNGC 5 cut(s) 77, 125, 144, 149, 237
FspBI CTAG 2 cut(s) 120, 292
GlaI GCGC 2 cut(s) 142, 147
GluI GCNGC 5 cut(s) 77, 125, 144, 149, 237
GsaI CCCAGC 1 cut(s) 256
GsuI CTGGAG 1 cut(s) 148
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 2 cut(s) 251, 269
HgaI GACGC 2 cut(s) 82, 228
HhaI GCGC 2 cut(s) 143, 148
Hin1I GRCGYC 1 cut(s) 239
Hin6I GCGC 2 cut(s) 141, 146
HinP1I GCGC 2 cut(s) 141, 146
HinfI GANTC 1 cut(s) 202
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 3 cut(s) 67, 72, 229
Hpy188III TCNNGA 1 cut(s) 42
Hpy8I GTNNAC 1 cut(s) 183
Hpy99I CGWCG 4 cut(s) 22, 91, 104, 107
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 2 cut(s) 22, 57
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 143, 275
HpyF3I CTNAG 1 cut(s) 264
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 239
HspAI GCGC 2 cut(s) 141, 146
Kzo9I GATC 3 cut(s) 62, 67, 283
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 9 cut(s) 55, 65, 119, 151, 178, 200, 233, 251, 266
Lsp1109I GCAGC 3 cut(s) 63, 111, 135
MaeI CTAG 2 cut(s) 120, 292
MaeII ACGT 1 cut(s) 111
MalI GATC 3 cut(s) 64, 69, 285
MboI GATC 3 cut(s) 62, 67, 283
MboII GAAGA 2 cut(s) 106, 211
MflI RGATCY 1 cut(s) 62
MlyI GAGTC 1 cut(s) 196
MnlI CCTC 3 cut(s) 187, 225, 268
MroXI GAANNNNTTC 2 cut(s) 113, 173
MspR9I CCNGG 1 cut(s) 166
MteI GCGCNGCGC 1 cut(s) 144
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 3 cut(s) 130, 143, 275
NdeII GATC 3 cut(s) 62, 67, 283
NlaIV GGNNCC 3 cut(s) 6, 40, 176
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PdmI GAANNNNTTC 2 cut(s) 113, 173
PflFI GACNNNGTC 1 cut(s) 22
PfoI TCCNGGA 1 cut(s) 164
PkrI GCNGC 5 cut(s) 78, 126, 145, 150, 238
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PshAI GACNNNNGTC 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 164
PspFI CCCAGC 1 cut(s) 252
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 3 cut(s) 6, 40, 176
PspPI GGNCC 3 cut(s) 4, 39, 250
PsuI RGATCY 1 cut(s) 62
PsyI GACNNNGTC 1 cut(s) 22
RsaI GTAC 3 cut(s) 59, 161, 182
RsaNI GTAC 3 cut(s) 58, 160, 181
SatI GCNGC 5 cut(s) 77, 125, 144, 149, 237
Sau3AI GATC 3 cut(s) 62, 67, 283
Sau96I GGNCC 3 cut(s) 4, 39, 250
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 166
SetI ASST 4 cut(s) 33, 114, 198, 258
SinI GGWCC 2 cut(s) 4, 39
SsiI CCGC 3 cut(s) 8, 143, 236
SspMI CTAG 2 cut(s) 120, 292
StyD4I CCNGG 1 cut(s) 164
StyI CCWWGG 2 cut(s) 27, 119
TaaI ACNGT 2 cut(s) 22, 57
TaiI ACGT 1 cut(s) 114
TaqI TCGA 1 cut(s) 17
TauI GCSGC 2 cut(s) 146, 239
TseI GCWGC 3 cut(s) 76, 124, 148
Tth111I GACNNNGTC 1 cut(s) 22
VpaK11BI GGWCC 2 cut(s) 4, 39
XmaJI CCTAGG 1 cut(s) 119
XmnI GAANNNNTTC 2 cut(s) 113, 173
XspI CTAG 2 cut(s) 120, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.