Rh6BG310300

protein import into mitochondrial matrix

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0014249
Physical Location & Seq
Forward (+)
53937189 .. 53938420
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG310300.1

Sequence Viewer

Length: 447 bp
ATGACTCGTCCTTTTCAACTGAGTCACCTCGTTCTTCTTCTTCTTCTTCTTCTAGCTACTACCGCAACAGCCAGGCCGGGCTTTCTCTTCACTCGGACCACCGGCCGGTGCACACCGGACTACTGGGGCAGCCGGGTGGAGTCGTGGCCGAGGATGGTCCCGCAGACATCGACGGTGTCCAAGGTGTTCGGGTCCAGAGCCTACGAACGGTACAGATCCGATCTGACGCTGCTGGAAGCGACGGCAAGGAGCGACGACGAGAACGTCTTCCCTAGGCTGCTGAAGCAGGCGAGCGCGGCGCTGCTCAACTCGTACTCCAGGAAGGGGTTCCCGTACACGGCGTGGGAGGTGAAGACTCGGGTCATACAGGGCTTGGTGTCCGAGAGGGCGGCGTCCCGTCAGGCCCAGCTATTCTCTCAGGCCAATGAGGCTTGTGATCTGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.73

Weight (kDa)

9.92

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20515
fragaria_vesca FvH4_2g21450
malus_domestica MD05G1197000.v1.1
prunus_persica Prupe.8G223500_v2.0.a1
pyrus_communis pycom10g15900
rosa_chinensis RchiOBHm_Chr6g0288091
rosa_laevigata RLG00000012440
rosa_multiflora Rmu_co7961866.1_g000001 Rmu_sc0001117.1_g000002 Rmu_sc0010766.1_g000001
rosa_roxburghii Rroxscaffold_7G00180520
rosa_rugosa Rorug06G0194200
rosa_samantha Rh6AG304300 Rh6BG310300 Rh6CG318300 Rh6DG303200
rosa_wichuraiana Rw6G026330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
AccII CGCG 1 cut(s) 296
AciI CCGC 4 cut(s) 63, 161, 296, 389
AclWI GGATC 1 cut(s) 210
AcoI YGGCCR 2 cut(s) 103, 146
AcuI CTGAAG 1 cut(s) 302
AcyI GRCGYC 1 cut(s) 392
AdeI CACNNNGTG 1 cut(s) 342
AfaI GTAC 3 cut(s) 212, 314, 335
AfiI CCNNNNNNNGG 4 cut(s) 105, 207, 324, 337
AgsI TTSAA 1 cut(s) 17
AjnI CCWGG 2 cut(s) 71, 317
AluBI AGCT 2 cut(s) 56, 409
AluI AGCT 2 cut(s) 56, 409
Alw21I GWGCWC 1 cut(s) 113
Alw44I GTGCAC 1 cut(s) 109
AlwI GGATC 1 cut(s) 210
Ama87I CYCGRG 1 cut(s) 357
AoxI GGCC 5 cut(s) 74, 103, 146, 402, 420
ApaLI GTGCAC 1 cut(s) 109
ApeKI GCWGC 4 cut(s) 129, 229, 277, 301
Asp700I GAANNNNTTC 2 cut(s) 266, 326
AspA2I CCTAGG 1 cut(s) 272
AspLEI GCGC 2 cut(s) 296, 301
AspS9I GGNCC 4 cut(s) 96, 157, 192, 403
AsuC2I CCSGG 2 cut(s) 78, 134
AsuHPI GGTGA 2 cut(s) 17, 361
AvaI CYCGRG 1 cut(s) 357
AvaII GGWCC 3 cut(s) 96, 157, 192
AvrII CCTAGG 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 113
BbsI GAAGAC 2 cut(s) 259, 359
Bbv12I GWGCWC 1 cut(s) 113
BbvI GCAGC 4 cut(s) 141, 216, 264, 288
BccI CCATC 1 cut(s) 148
BceAI ACGGC 2 cut(s) 258, 354
BciT130I CCWGG 2 cut(s) 73, 319
BcnI CCSGG 2 cut(s) 78, 134
BfaI CTAG 3 cut(s) 53, 273, 445
BfoI RGCGCY 1 cut(s) 302
BglI GCCNNNNNGGC 1 cut(s) 428
BisI GCNGC 6 cut(s) 130, 230, 278, 297, 302, 390
BlnI CCTAGG 1 cut(s) 272
BlsI GCNGC 6 cut(s) 131, 231, 279, 298, 303, 391
Bme1390I CCNGG 4 cut(s) 73, 78, 134, 319
Bme18I GGWCC 3 cut(s) 96, 157, 192
BmeT110I CYCGRG 1 cut(s) 357
BmgT120I GGNCC 4 cut(s) 96, 157, 192, 403
BmiI GGNNCC 3 cut(s) 159, 193, 329
BmrFI CCNGG 4 cut(s) 73, 78, 134, 319
BmrI ACTGGG 1 cut(s) 133
BmuI ACTGGG 1 cut(s) 133
BoxI GACNNNNGTC 1 cut(s) 359
BpiI GAAGAC 2 cut(s) 259, 359
BpmI CTGGAG 1 cut(s) 301
BpuMI CCSGG 2 cut(s) 78, 134
BsaHI GRCGYC 1 cut(s) 392
BsaJI CCNNGG 3 cut(s) 149, 180, 272
BsaWI WCCGGW 1 cut(s) 115
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 4 cut(s) 105, 207, 324, 337
Bse118I RCCGGY 2 cut(s) 101, 105
Bse1I ACTGG 1 cut(s) 128
BseBI CCWGG 2 cut(s) 73, 319
BseDI CCNNGG 3 cut(s) 149, 180, 272
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 4 cut(s) 105, 207, 324, 337
BseMII CTCAG 2 cut(s) 11, 431
BseNI ACTGG 1 cut(s) 128
BseSI GKGCMC 1 cut(s) 113
BseX3I CGGCCG 1 cut(s) 103
BseXI GCAGC 4 cut(s) 141, 216, 264, 288
BseYI CCCAGC 1 cut(s) 405
BsgI GTGCAG 1 cut(s) 425
Bsh1236I CGCG 1 cut(s) 296
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 5 cut(s) 76, 105, 148, 404, 422
BsiEI CGRYCG 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 357
BsiSI CCGG 5 cut(s) 77, 102, 106, 116, 133
BslFI GGGAC 2 cut(s) 143, 379
BslI CCNNNNNNNGG 4 cut(s) 105, 207, 324, 337
BsmFI GGGAC 2 cut(s) 143, 379
BsnI GGCC 5 cut(s) 76, 105, 148, 404, 422
BsoBI CYCGRG 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 3 cut(s) 215, 220, 436
BspACI CCGC 4 cut(s) 63, 161, 296, 389
BspANI GGCC 5 cut(s) 76, 105, 148, 404, 422
BspCNI CTCAG 2 cut(s) 12, 430
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 3 cut(s) 159, 193, 329
BspPI GGATC 1 cut(s) 210
BsrFI RCCGGY 2 cut(s) 101, 105
BsrI ACTGG 1 cut(s) 128
BssAI RCCGGY 2 cut(s) 101, 105
BssECI CCNNGG 3 cut(s) 149, 180, 272
BssMI GATC 3 cut(s) 215, 220, 436
BssNI GRCGYC 1 cut(s) 392
BssT1I CCWWGG 2 cut(s) 180, 272
Bst2UI CCWGG 2 cut(s) 73, 319
Bst4CI ACNGT 2 cut(s) 175, 210
Bst6I CTCTTC 1 cut(s) 92
BstACI GRCGYC 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 288, 292
BstDEI CTNAG 2 cut(s) 20, 417
BstF5I GGATG 1 cut(s) 159
BstFNI CGCG 1 cut(s) 296
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 2 cut(s) 296, 301
BstKTI GATC 3 cut(s) 218, 223, 439
BstMBI GATC 3 cut(s) 215, 220, 436
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 4 cut(s) 62, 283, 296, 428
BstNI CCWGG 2 cut(s) 73, 319
BstPAI GACNNNNGTC 1 cut(s) 359
BstSCI CCNGG 4 cut(s) 71, 76, 132, 317
BstSLI GKGCMC 1 cut(s) 113
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 4 cut(s) 141, 216, 264, 288
BstV2I GAAGAC 2 cut(s) 259, 359
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BstZI CGGCCG 1 cut(s) 103
BsuRI GGCC 5 cut(s) 76, 105, 148, 404, 422
BtsCI GGATG 1 cut(s) 159
Cac8I GCNNGC 2 cut(s) 288, 292
CfoI GCGC 2 cut(s) 296, 301
Cfr10I RCCGGY 2 cut(s) 101, 105
Cfr13I GGNCC 4 cut(s) 96, 157, 192, 403
CseI GACGC 2 cut(s) 235, 381
Csp6I GTAC 3 cut(s) 211, 313, 334
CviQI GTAC 3 cut(s) 211, 313, 334
DdeI CTNAG 2 cut(s) 20, 417
DpnI GATC 3 cut(s) 217, 222, 438
DpnII GATC 3 cut(s) 215, 220, 436
DraIII CACNNNGTG 1 cut(s) 342
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
EaeI YGGCCR 2 cut(s) 103, 146
EagI CGGCCG 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
EclXI CGGCCG 1 cut(s) 103
Eco130I CCWWGG 2 cut(s) 180, 272
Eco47I GGWCC 3 cut(s) 96, 157, 192
Eco52I CGGCCG 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 302
Eco88I CYCGRG 1 cut(s) 357
EcoRII CCWGG 2 cut(s) 71, 317
EcoT14I CCWWGG 2 cut(s) 180, 272
ErhI CCWWGG 2 cut(s) 180, 272
FaiI YATR 1 cut(s) 365
FaqI GGGAC 2 cut(s) 143, 379
FauI CCCGC 1 cut(s) 168
Fnu4HI GCNGC 6 cut(s) 130, 230, 278, 297, 302, 390
FokI GGATG 1 cut(s) 166
Fsp4HI GCNGC 6 cut(s) 130, 230, 278, 297, 302, 390
FspBI CTAG 3 cut(s) 53, 273, 445
GlaI GCGC 2 cut(s) 295, 300
GluI GCNGC 6 cut(s) 130, 230, 278, 297, 302, 390
GsaI CCCAGC 1 cut(s) 409
GsuI CTGGAG 1 cut(s) 301
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 5 cut(s) 76, 105, 148, 404, 422
HapII CCGG 5 cut(s) 77, 102, 106, 116, 133
HgaI GACGC 2 cut(s) 235, 381
HhaI GCGC 2 cut(s) 296, 301
Hin1I GRCGYC 1 cut(s) 392
Hin6I GCGC 2 cut(s) 294, 299
HinP1I GCGC 2 cut(s) 294, 299
HinfI GANTC 4 cut(s) 4, 22, 140, 355
HpaII CCGG 5 cut(s) 77, 102, 106, 116, 133
HphI GGTGA 2 cut(s) 17, 361
Hpy166II GTNNAC 2 cut(s) 111, 336
Hpy188I TCNGA 4 cut(s) 96, 220, 225, 382
Hpy188III TCNNGA 1 cut(s) 195
Hpy8I GTNNAC 2 cut(s) 111, 336
Hpy99I CGWCG 4 cut(s) 175, 244, 257, 260
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 2 cut(s) 175, 210
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 2 cut(s) 111, 442
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 283, 296, 428
HpyF3I CTNAG 2 cut(s) 20, 417
HpySE526I ACGT 1 cut(s) 264
Hsp92I GRCGYC 1 cut(s) 392
HspAI GCGC 2 cut(s) 294, 299
Kzo9I GATC 3 cut(s) 215, 220, 436
LmnI GCTCC 1 cut(s) 249
Lsp1109I GCAGC 4 cut(s) 141, 216, 264, 288
MaeI CTAG 3 cut(s) 53, 273, 445
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 23
MalI GATC 3 cut(s) 217, 222, 438
MboI GATC 3 cut(s) 215, 220, 436
MboII GAAGA 9 cut(s) 26, 29, 32, 35, 38, 41, 79, 259, 364
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 113
MlyI GAGTC 3 cut(s) 31, 149, 349
MnlI CCTC 5 cut(s) 38, 144, 340, 378, 421
MroXI GAANNNNTTC 2 cut(s) 266, 326
MspI CCGG 5 cut(s) 77, 102, 106, 116, 133
MspR9I CCNGG 4 cut(s) 73, 78, 134, 319
MteI GCGCNGCGC 1 cut(s) 297
MvaI CCWGG 2 cut(s) 73, 319
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 4 cut(s) 62, 283, 296, 428
NciI CCSGG 2 cut(s) 78, 134
NdeII GATC 3 cut(s) 215, 220, 436
NlaIV GGNNCC 3 cut(s) 159, 193, 329
NmeAIII GCCGAG 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 23
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PdmI GAANNNNTTC 2 cut(s) 266, 326
PflFI GACNNNGTC 1 cut(s) 175
PfoI TCCNGGA 1 cut(s) 317
PkrI GCNGC 6 cut(s) 131, 231, 279, 298, 303, 391
PleI GAGTC 3 cut(s) 30, 148, 349
PpsI GAGTC 3 cut(s) 30, 148, 349
PshAI GACNNNNGTC 1 cut(s) 359
Psp6I CCWGG 2 cut(s) 71, 317
PspFI CCCAGC 1 cut(s) 405
PspGI CCWGG 2 cut(s) 71, 317
PspN4I GGNNCC 3 cut(s) 159, 193, 329
PspPI GGNCC 4 cut(s) 96, 157, 192, 403
PsuI RGATCY 1 cut(s) 215
PsyI GACNNNGTC 1 cut(s) 175
RsaI GTAC 3 cut(s) 212, 314, 335
RsaNI GTAC 3 cut(s) 211, 313, 334
SatI GCNGC 6 cut(s) 130, 230, 278, 297, 302, 390
Sau3AI GATC 3 cut(s) 215, 220, 436
Sau96I GGNCC 4 cut(s) 96, 157, 192, 403
SchI GAGTC 3 cut(s) 31, 149, 349
ScrFI CCNGG 4 cut(s) 73, 78, 134, 319
SduI GDGCHC 1 cut(s) 113
SetI ASST 6 cut(s) 30, 58, 186, 267, 351, 411
SinI GGWCC 3 cut(s) 96, 157, 192
SsiI CCGC 4 cut(s) 63, 161, 296, 389
SspMI CTAG 3 cut(s) 53, 273, 445
StyD4I CCNGG 4 cut(s) 71, 76, 132, 317
StyI CCWWGG 2 cut(s) 180, 272
TaaI ACNGT 2 cut(s) 175, 210
TaiI ACGT 1 cut(s) 267
TaqI TCGA 1 cut(s) 170
TauI GCSGC 2 cut(s) 299, 392
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 4 cut(s) 129, 229, 277, 301
Tsp45I GTSAC 1 cut(s) 23
Tth111I GACNNNGTC 1 cut(s) 175
VneI GTGCAC 1 cut(s) 109
VpaK11BI GGWCC 3 cut(s) 96, 157, 192
XmaJI CCTAGG 1 cut(s) 272
XmnI GAANNNNTTC 2 cut(s) 266, 326
XspI CTAG 3 cut(s) 53, 273, 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.